Wall clock time and date at job start Tue Mar 31 2020 10:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47488 * 2 1 4 4 H 1.09005 * 109.47396 * 180.95682 * 3 2 1 5 5 C 1.50697 * 109.47323 * 300.95724 * 3 2 1 6 6 H 1.08006 * 119.99798 * 119.99777 * 5 3 2 7 7 C 1.37874 * 119.99936 * 300.00258 * 5 3 2 8 8 N 1.31517 * 119.99928 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00012 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.46756 * 90.00390 * 9 7 5 11 11 H 1.48502 * 109.47233 * 209.99887 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00385 * 9 7 5 13 13 N 1.46908 * 109.47190 * 60.96005 * 3 2 1 14 14 C 1.46899 * 110.99771 * 86.57058 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.07995 * 14 13 3 16 16 C 1.38236 * 119.99813 * 259.99918 * 15 14 13 17 17 C 1.38297 * 119.99438 * 179.97438 * 16 15 14 18 18 Br 1.89101 * 120.01338 * 180.02562 * 17 16 15 19 19 C 1.38345 * 119.97832 * 0.02562 * 17 16 15 20 20 C 1.38196 * 119.99317 * 359.97438 * 19 17 16 21 21 C 1.38220 * 119.99167 * 79.72632 * 15 14 13 22 22 C 1.50698 * 119.99195 * 0.02562 * 21 15 14 23 23 H 1.08991 * 109.47448 * 175.68662 * 1 2 3 24 24 H 1.09003 * 109.46757 * 55.68445 * 1 2 3 25 25 H 1.09007 * 109.47002 * 295.68892 * 1 2 3 26 26 H 1.09010 * 109.46783 * 120.00305 * 2 1 3 27 27 H 1.09001 * 109.47288 * 239.99526 * 2 1 3 28 28 H 0.97004 * 119.99955 * 179.97438 * 8 7 5 29 29 H 1.00902 * 110.99886 * 210.52955 * 13 3 2 30 30 H 1.08995 * 109.47219 * 295.07826 * 14 13 3 31 31 H 1.08999 * 109.47280 * 55.08503 * 14 13 3 32 32 H 1.08003 * 120.00534 * 359.95998 * 16 15 14 33 33 H 1.08005 * 120.00972 * 180.02562 * 19 17 16 34 34 H 1.07998 * 119.99758 * 180.02562 * 20 19 17 35 35 H 1.08994 * 109.47321 * 89.99990 * 22 21 15 36 36 H 1.09003 * 109.46521 * 209.99806 * 22 21 15 37 37 H 1.08993 * 109.46742 * 329.99487 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4424 -0.0172 5 6 1.5185 2.1597 -1.2184 6 1 0.8993 3.0373 -1.1046 7 6 1.8317 1.6956 -2.4783 8 7 1.3762 2.3213 -3.5416 9 14 2.9032 0.1782 -2.6751 10 1 2.0442 -1.0326 -2.7135 11 1 3.6751 0.2778 -3.9398 12 1 3.8419 0.0829 -1.5284 13 7 1.5694 2.1283 1.2109 14 6 2.4909 1.9065 2.3333 15 6 2.0422 2.7201 3.5198 16 6 2.6609 3.9223 3.8073 17 6 2.2487 4.6691 4.8959 18 35 3.0943 6.3141 5.2893 19 6 1.2174 4.2122 5.6970 20 6 0.5993 3.0103 5.4089 21 6 1.0081 2.2667 4.3171 22 6 0.3301 0.9588 4.0000 23 1 -0.3634 -1.0246 -0.0773 24 1 -0.3633 0.5794 -0.8488 25 1 -0.3633 0.4455 0.9262 26 1 1.8933 -0.5139 0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.5968 1.9950 -4.4281 29 1 1.4380 3.1140 1.0402 30 1 2.4935 0.8491 2.5978 31 1 3.4966 2.2110 2.0434 32 1 3.4664 4.2783 3.1821 33 1 0.8948 4.7952 6.5470 34 1 -0.2060 2.6538 6.0339 35 1 0.8425 0.1487 4.5189 36 1 -0.7090 0.9997 4.3268 37 1 0.3663 0.7821 2.9251 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578024281.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:49 Heat of formation + Delta-G solvation = 19.277004 kcal Electronic energy + Delta-G solvation = -18090.808871 eV Core-core repulsion = 15299.798965 eV Total energy + Delta-G solvation = -2791.009906 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.64842 -36.61243 -33.74355 -32.77406 -31.70637 -30.38135 -30.24343 -27.09064 -26.23883 -24.42265 -23.14403 -22.02411 -20.44585 -19.35342 -16.79450 -16.16994 -15.95210 -15.36962 -14.80084 -14.24520 -13.83468 -13.56067 -13.38388 -13.15788 -12.95433 -12.63412 -12.50434 -12.25558 -12.01687 -11.93479 -11.21372 -11.08285 -10.93685 -10.66267 -10.55734 -10.50490 -10.28396 -10.20486 -9.99070 -9.37945 -9.03466 -8.84193 -8.60350 -8.41951 -7.55258 -6.12496 -4.11589 1.12729 1.30353 1.61569 3.24740 3.33827 3.35934 3.59050 4.35871 4.70714 4.83724 4.97013 5.15495 5.22259 5.26620 5.33024 5.58086 5.72846 5.79950 5.82678 5.92658 6.05405 6.14338 6.14847 6.19033 6.31546 6.38018 6.45340 6.67990 6.72132 6.85947 6.88735 7.07427 7.20134 7.45842 7.57181 7.85523 8.26874 8.56328 8.92147 9.49660 11.00309 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.003792 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.042940 B = 7382.846554 C = 8290.024429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.113 4.113 3 C 0.185 3.815 4 H 0.002 0.998 5 C -0.514 4.514 6 H 0.079 0.921 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.668 5.668 14 C 0.093 3.907 15 C -0.070 4.070 16 C -0.082 4.082 17 C -0.097 4.097 18 Br -0.063 7.063 19 C -0.094 4.094 20 C -0.122 4.122 21 C -0.042 4.042 22 C -0.128 4.128 23 H 0.020 0.980 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.031 0.969 27 H 0.041 0.959 28 H 0.264 0.736 29 H 0.342 0.658 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.582 2.865 20.115 20.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.076 3.924 4 H 0.019 0.981 5 C -0.552 4.552 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.194 1.194 13 N -0.299 5.299 14 C -0.036 4.036 15 C -0.071 4.071 16 C -0.102 4.102 17 C -0.177 4.177 18 Br 0.022 6.978 19 C -0.114 4.114 20 C -0.141 4.141 21 C -0.043 4.043 22 C -0.184 4.184 23 H 0.039 0.961 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.160 0.840 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.476 2.974 20.223 20.494 hybrid contribution 1.158 -0.550 -0.569 1.402 sum 2.633 2.424 19.654 19.977 Atomic orbital electron populations 1.21504 0.95527 0.98349 1.02968 1.21745 0.97390 0.98111 0.97819 1.19617 0.93198 0.91404 0.88199 0.98074 1.21009 1.32494 1.13235 0.88474 0.90340 1.24883 0.95401 0.96696 0.95825 1.69888 1.45167 1.40371 0.98078 0.86876 0.80908 0.83793 0.76774 1.20367 1.22575 1.19438 1.60582 1.46493 1.17311 1.05527 1.20962 0.94474 0.98680 0.89486 1.19905 0.95712 0.94660 0.96845 1.21055 0.99819 0.93832 0.95506 1.21639 1.01050 0.94298 1.00666 1.96671 1.79651 1.26890 1.94594 1.20999 0.94897 0.96505 0.98969 1.21038 1.00607 0.94652 0.97757 1.19947 0.94312 0.96818 0.93220 1.21012 0.99227 0.92993 1.05197 0.96100 0.91236 0.92717 0.95044 0.94124 0.92582 0.83968 0.90543 0.94983 0.85223 0.85494 0.85434 0.91571 0.91833 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.53 37.16 0.35 -2.18 16 2 C -0.11 -2.37 5.30 -26.74 -0.14 -2.51 16 3 C 0.18 4.11 1.90 -68.86 -0.13 3.98 16 4 H 0.00 0.04 6.75 -51.93 -0.35 -0.31 16 5 C -0.51 -13.64 7.79 -34.44 -0.27 -13.91 16 6 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -26.70 13.96 55.43 0.77 -25.93 16 9 Si 0.89 21.55 24.36 -169.99 -4.14 17.41 16 10 H -0.28 -6.60 6.88 56.52 0.39 -6.21 16 11 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 13 N -0.67 -12.54 5.01 -109.22 -0.55 -13.09 16 14 C 0.09 1.48 4.80 -4.97 -0.02 1.45 16 15 C -0.07 -0.99 5.34 -104.63 -0.56 -1.55 16 16 C -0.08 -1.12 9.41 -39.56 -0.37 -1.50 16 17 C -0.10 -1.24 6.22 -39.52 -0.25 -1.49 16 18 Br -0.06 -0.74 33.70 -68.01 -2.29 -3.03 16 19 C -0.09 -1.08 9.79 -39.56 -0.39 -1.47 16 20 C -0.12 -1.39 9.70 -39.58 -0.38 -1.78 16 21 C -0.04 -0.55 5.88 -104.62 -0.62 -1.16 16 22 C -0.13 -1.53 9.26 36.00 0.33 -1.20 16 23 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 1.59 7.04 -51.93 -0.37 1.23 16 25 H 0.05 1.02 6.84 -51.93 -0.36 0.66 16 26 H 0.03 0.59 7.63 -51.92 -0.40 0.19 16 27 H 0.04 0.92 3.29 -51.93 -0.17 0.75 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 29 H 0.34 6.72 8.11 -39.29 -0.32 6.40 16 30 H 0.08 1.17 6.80 -51.93 -0.35 0.82 16 31 H 0.03 0.52 7.79 -51.93 -0.40 0.11 16 32 H 0.13 1.73 8.04 -52.48 -0.42 1.31 16 33 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.10 1.42 5.41 -51.93 -0.28 1.14 16 LS Contribution 312.25 15.07 4.71 4.71 Total: -1.00 -27.93 312.25 -9.16 -37.09 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.12 Total: 4.18 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -2.54 Total: -21.34 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.23 Total: -39.02 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.14 Total: 17.41 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -2.29 Total: -3.03 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.93 -9.16 -37.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578024281.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.369 kcal (2) G-P(sol) polarization free energy of solvation -27.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds