Wall clock time and date at job start Tue Mar 31 2020 10:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47488 * 2 1 4 4 H 1.09005 * 109.47396 * 180.95682 * 3 2 1 5 5 C 1.50697 * 109.47323 * 300.95724 * 3 2 1 6 6 H 1.08006 * 119.99798 * 119.99777 * 5 3 2 7 7 C 1.37874 * 119.99936 * 300.00258 * 5 3 2 8 8 N 1.31517 * 119.99928 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00012 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.46756 * 90.00390 * 9 7 5 11 11 H 1.48502 * 109.47233 * 209.99887 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00385 * 9 7 5 13 13 N 1.46908 * 109.47190 * 60.96005 * 3 2 1 14 14 C 1.46899 * 110.99771 * 86.57058 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.07995 * 14 13 3 16 16 C 1.38236 * 119.99813 * 259.99918 * 15 14 13 17 17 C 1.38297 * 119.99438 * 179.97438 * 16 15 14 18 18 Br 1.89101 * 120.01338 * 180.02562 * 17 16 15 19 19 C 1.38345 * 119.97832 * 0.02562 * 17 16 15 20 20 C 1.38196 * 119.99317 * 359.97438 * 19 17 16 21 21 C 1.38220 * 119.99167 * 79.72632 * 15 14 13 22 22 C 1.50698 * 119.99195 * 0.02562 * 21 15 14 23 23 H 1.08991 * 109.47448 * 175.68662 * 1 2 3 24 24 H 1.09003 * 109.46757 * 55.68445 * 1 2 3 25 25 H 1.09007 * 109.47002 * 295.68892 * 1 2 3 26 26 H 1.09010 * 109.46783 * 120.00305 * 2 1 3 27 27 H 1.09001 * 109.47288 * 239.99526 * 2 1 3 28 28 H 0.97004 * 119.99955 * 179.97438 * 8 7 5 29 29 H 1.00902 * 110.99886 * 210.52955 * 13 3 2 30 30 H 1.08995 * 109.47219 * 295.07826 * 14 13 3 31 31 H 1.08999 * 109.47280 * 55.08503 * 14 13 3 32 32 H 1.08003 * 120.00534 * 359.95998 * 16 15 14 33 33 H 1.08005 * 120.00972 * 180.02562 * 19 17 16 34 34 H 1.07998 * 119.99758 * 180.02562 * 20 19 17 35 35 H 1.08994 * 109.47321 * 89.99990 * 22 21 15 36 36 H 1.09003 * 109.46521 * 209.99806 * 22 21 15 37 37 H 1.08993 * 109.46742 * 329.99487 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4424 -0.0172 5 6 1.5185 2.1597 -1.2184 6 1 0.8993 3.0373 -1.1046 7 6 1.8317 1.6956 -2.4783 8 7 1.3762 2.3213 -3.5416 9 14 2.9032 0.1782 -2.6751 10 1 2.0442 -1.0326 -2.7135 11 1 3.6751 0.2778 -3.9398 12 1 3.8419 0.0829 -1.5284 13 7 1.5694 2.1283 1.2109 14 6 2.4909 1.9065 2.3333 15 6 2.0422 2.7201 3.5198 16 6 2.6609 3.9223 3.8073 17 6 2.2487 4.6691 4.8959 18 35 3.0943 6.3141 5.2893 19 6 1.2174 4.2122 5.6970 20 6 0.5993 3.0103 5.4089 21 6 1.0081 2.2667 4.3171 22 6 0.3301 0.9588 4.0000 23 1 -0.3634 -1.0246 -0.0773 24 1 -0.3633 0.5794 -0.8488 25 1 -0.3633 0.4455 0.9262 26 1 1.8933 -0.5139 0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.5968 1.9950 -4.4281 29 1 1.4380 3.1140 1.0402 30 1 2.4935 0.8491 2.5978 31 1 3.4966 2.2110 2.0434 32 1 3.4664 4.2783 3.1821 33 1 0.8948 4.7952 6.5470 34 1 -0.2060 2.6538 6.0339 35 1 0.8425 0.1487 4.5189 36 1 -0.7090 0.9997 4.3268 37 1 0.3663 0.7821 2.9251 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578024281.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:49 Heat of formation + Delta-G solvation = 3.458456 kcal Electronic energy + Delta-G solvation = -18091.494815 eV Core-core repulsion = 15299.798965 eV Total energy + Delta-G solvation = -2791.695850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.66258 -38.21390 -35.09078 -34.07721 -33.44092 -31.54519 -31.32223 -28.78468 -27.29517 -25.78928 -24.92145 -23.03548 -21.59899 -21.02639 -18.63253 -17.57600 -17.05683 -16.81206 -15.90687 -15.67679 -15.44355 -15.09254 -14.74069 -14.62489 -14.19025 -14.01902 -13.67503 -13.46259 -13.32572 -13.02668 -12.83569 -12.65535 -12.44417 -12.07400 -12.05714 -11.77831 -11.65564 -11.53941 -11.24497 -11.19491 -10.93130 -10.67526 -9.87663 -9.40421 -9.09986 -8.28091 -6.30124 0.15466 0.32347 0.66350 1.31431 1.35205 1.44549 2.32258 2.60186 3.08489 3.56268 3.83486 3.88094 4.04305 4.25777 4.32100 4.38352 4.50365 4.51498 4.70738 4.74533 4.81943 4.83297 4.94533 4.98664 5.06150 5.19371 5.24133 5.32647 5.34982 5.42842 5.45677 5.67226 5.72417 5.84377 5.93865 6.01313 6.49718 6.65616 6.83359 7.35133 8.88401 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.003792 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.042940 B = 7382.846554 C = 8290.024429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.113 4.113 3 C 0.190 3.810 4 H -0.007 1.007 5 C -0.507 4.507 6 H 0.039 0.961 7 C 0.019 3.981 8 N -0.947 5.947 9 Si 0.943 3.057 10 H -0.266 1.266 11 H -0.303 1.303 12 H -0.252 1.252 13 N -0.661 5.661 14 C 0.099 3.901 15 C -0.086 4.086 16 C -0.094 4.094 17 C -0.109 4.109 18 Br -0.057 7.057 19 C -0.090 4.090 20 C -0.118 4.118 21 C -0.049 4.049 22 C -0.125 4.125 23 H 0.044 0.956 24 H 0.031 0.969 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.029 0.971 28 H 0.264 0.736 29 H 0.333 0.667 30 H 0.087 0.913 31 H 0.026 0.974 32 H 0.124 0.876 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 1.397 22.735 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.151 4.151 3 C 0.080 3.920 4 H 0.010 0.990 5 C -0.545 4.545 6 H 0.058 0.942 7 C -0.178 4.178 8 N -0.588 5.588 9 Si 0.771 3.229 10 H -0.192 1.192 11 H -0.231 1.231 12 H -0.176 1.176 13 N -0.291 5.291 14 C -0.030 4.030 15 C -0.087 4.087 16 C -0.114 4.114 17 C -0.188 4.188 18 Br 0.029 6.971 19 C -0.110 4.110 20 C -0.136 4.136 21 C -0.050 4.050 22 C -0.181 4.181 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.151 0.849 30 H 0.105 0.895 31 H 0.044 0.956 32 H 0.142 0.858 33 H 0.167 0.833 34 H 0.175 0.825 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.457 1.499 22.877 22.973 hybrid contribution 1.117 0.026 -1.277 1.697 sum 2.574 1.526 21.600 21.806 Atomic orbital electron populations 1.21403 0.94918 0.99302 1.01933 1.21711 0.97933 0.96785 0.98656 1.19452 0.92360 0.92360 0.87820 0.98977 1.21246 1.30880 1.11993 0.90387 0.94237 1.25658 0.96911 0.99730 0.95539 1.70035 1.47492 1.42576 0.98662 0.85938 0.79560 0.80495 0.76916 1.19158 1.23065 1.17603 1.60544 1.47258 1.16403 1.04938 1.20930 0.93435 0.99665 0.88955 1.19767 0.97065 0.95010 0.96906 1.21076 1.00091 0.94132 0.96140 1.21785 1.01651 0.94650 1.00707 1.96672 1.79671 1.26337 1.94450 1.21333 0.93950 0.96657 0.99069 1.21362 1.00835 0.94108 0.97316 1.20160 0.93859 0.97467 0.93478 1.20993 1.00345 0.92928 1.03870 0.93666 0.95019 0.91426 0.91918 0.95326 0.92666 0.84947 0.89524 0.95613 0.85829 0.83253 0.82485 0.89996 0.90258 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.56 9.53 71.98 0.69 -3.87 16 2 C -0.11 -4.52 5.30 30.59 0.16 -4.36 16 3 C 0.19 8.36 1.90 44.16 0.08 8.44 16 4 H -0.01 -0.33 6.75 -2.38 -0.02 -0.35 16 5 C -0.51 -27.63 7.79 25.60 0.20 -27.43 16 6 H 0.04 2.41 7.84 -2.91 -0.02 2.39 16 7 C 0.02 1.09 5.45 84.65 0.46 1.55 16 8 N -0.95 -58.34 13.96 21.45 0.30 -58.04 16 9 Si 0.94 44.41 24.36 68.60 1.67 46.08 16 10 H -0.27 -11.95 6.88 99.48 0.68 -11.26 16 11 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 12 H -0.25 -11.05 6.53 99.48 0.65 -10.40 16 13 N -0.66 -24.61 5.01 -499.45 -2.50 -27.12 16 14 C 0.10 3.02 4.80 85.56 0.41 3.43 16 15 C -0.09 -2.34 5.34 -19.87 -0.11 -2.45 16 16 C -0.09 -2.52 9.41 22.28 0.21 -2.31 16 17 C -0.11 -2.61 6.22 22.31 0.14 -2.47 16 18 Br -0.06 -1.25 33.70 -20.37 -0.69 -1.93 16 19 C -0.09 -1.84 9.79 22.29 0.22 -1.62 16 20 C -0.12 -2.31 9.70 22.27 0.22 -2.09 16 21 C -0.05 -1.14 5.88 -19.86 -0.12 -1.26 16 22 C -0.13 -2.61 9.26 71.24 0.66 -1.95 16 23 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.03 1.43 7.04 -2.39 -0.02 1.42 16 25 H 0.07 2.39 6.84 -2.38 -0.02 2.38 16 26 H 0.06 2.13 7.63 -2.38 -0.02 2.11 16 27 H 0.03 1.22 3.29 -2.39 -0.01 1.21 16 28 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 29 H 0.33 13.39 8.11 -89.69 -0.73 12.66 16 30 H 0.09 2.46 6.80 -2.39 -0.02 2.44 16 31 H 0.03 0.82 7.79 -2.39 -0.02 0.80 16 32 H 0.12 3.34 8.04 -2.91 -0.02 3.32 16 33 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 37 H 0.08 2.00 5.41 -2.39 -0.01 1.99 16 Total: -1.00 -61.32 312.25 2.27 -59.05 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.27 Total: 18.34 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 3.22 Total: -36.38 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.20 Total: -85.16 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.67 Total: 46.08 kcal Atomic # 35 Polarization: -1.25 SS G_CDS: -0.69 Total: -1.93 kcal Total: -61.32 2.27 -59.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578024281.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.510 kcal (2) G-P(sol) polarization free energy of solvation -61.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds