Wall clock time and date at job start Tue Mar 31 2020 09:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39773 * 125.84274 * 2 1 4 4 C 1.36169 * 107.81422 * 179.73783 * 3 2 1 5 5 N 1.39205 * 126.21720 * 180.25974 * 4 3 2 6 6 S 1.65598 * 120.00504 * 0.18772 * 5 4 3 7 7 O 1.42100 * 106.40319 * 178.53736 * 6 5 4 8 8 O 1.42099 * 106.39979 * 311.45992 * 6 5 4 9 9 C 1.76204 * 107.21742 * 64.99838 * 6 5 4 10 10 C 1.41376 * 126.57874 * 89.99735 * 9 6 5 11 11 C 1.34519 * 106.84261 * 179.97438 * 10 9 6 12 12 O 1.34307 * 108.41623 * 0.02562 * 11 10 9 13 13 C 1.34306 * 109.47783 * 359.76814 * 12 11 10 14 14 N 1.35258 * 107.55884 * 0.41935 * 4 3 2 15 15 C 1.46491 * 126.04139 * 179.84451 * 14 4 3 16 16 C 1.50702 * 109.46957 * 269.71230 * 15 14 4 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 N 1.30839 * 125.83552 * 179.97438 * 2 1 3 25 25 H 1.08992 * 109.47103 * 269.98174 * 1 2 3 26 26 H 1.09002 * 109.46523 * 29.97742 * 1 2 3 27 27 H 1.09002 * 109.47110 * 149.97372 * 1 2 3 28 28 H 1.08003 * 126.09137 * 359.97438 * 3 2 1 29 29 H 0.97004 * 119.99655 * 180.18555 * 5 4 3 30 30 H 1.08005 * 126.58402 * 359.93774 * 10 9 6 31 31 H 1.07993 * 125.79066 * 180.02562 * 11 10 9 32 32 H 1.08000 * 125.78981 * 180.24526 * 13 12 11 33 33 H 1.09004 * 109.47166 * 149.71496 * 15 14 4 34 34 H 1.08994 * 109.47507 * 29.71202 * 15 14 4 35 35 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3255 1.1330 0.0000 4 6 3.6203 0.7116 0.0059 5 7 4.7500 1.5250 0.0130 6 16 4.5840 3.1726 0.0196 7 8 5.8996 3.7083 0.0609 8 8 3.6491 3.4858 -1.0037 9 6 3.8191 3.6138 1.5444 10 6 4.4756 3.9257 2.7570 11 6 3.5170 4.2028 3.6591 12 8 2.3215 4.0754 3.0605 13 6 2.4987 3.7230 1.7767 14 7 3.6093 -0.6409 0.0001 15 6 4.7867 -1.5125 0.0002 16 6 5.1908 -1.8109 -1.4207 17 1 4.6272 -1.3928 -2.2416 18 6 6.2839 -2.6128 -1.6726 19 7 6.9704 -3.1216 -0.6729 20 14 6.7894 -2.9764 -3.4336 21 1 5.8608 -2.2896 -4.3671 22 1 8.1726 -2.4870 -3.6627 23 1 6.7369 -4.4414 -3.6713 24 7 2.2730 -1.0607 0.0005 25 1 -0.3633 -0.0003 1.0276 26 1 -0.3632 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.9906 2.1598 -0.0004 29 1 5.6344 1.1266 0.0142 30 1 5.5422 3.9384 2.9269 31 1 3.6809 4.4806 4.6898 32 1 1.7142 3.5540 1.0540 33 1 4.5491 -2.4442 0.5137 34 1 5.6081 -1.0135 0.5143 35 1 7.7392 -3.6860 -0.8501 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578892883.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:06 Heat of formation + Delta-G solvation = 20.395849 kcal Electronic energy + Delta-G solvation = -23792.684630 eV Core-core repulsion = 20114.654289 eV Total energy + Delta-G solvation = -3678.030341 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.077 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.90062 -40.70859 -37.26355 -35.91423 -35.12430 -33.90082 -33.46616 -32.13655 -30.04536 -29.22275 -28.07805 -26.11894 -22.99828 -22.90869 -22.03004 -20.95953 -19.98033 -19.10708 -18.61290 -17.15453 -16.96861 -16.66240 -16.27371 -16.05616 -15.30909 -14.85282 -14.75543 -14.59240 -14.19221 -13.31322 -13.07403 -13.02062 -12.90213 -12.66537 -12.40990 -12.24411 -12.13638 -11.99779 -11.94339 -11.60248 -11.49825 -11.22982 -10.91474 -10.90631 -10.66462 -10.33956 -9.90373 -9.82401 -9.09113 -8.72698 -8.11385 -7.75124 -6.34398 -4.42481 0.25541 1.21088 1.94421 2.52328 2.70975 2.90913 3.17322 3.24285 3.25619 3.31205 3.53490 3.72315 4.10466 4.24900 4.48131 4.82505 4.97128 4.98999 5.09532 5.16708 5.42993 5.64370 5.68079 5.88139 5.94708 5.97770 6.02930 6.18124 6.32139 6.56330 6.75198 6.87240 6.95103 7.29654 7.58591 7.77150 7.84792 8.46675 8.66103 9.25336 10.73295 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.015489 B = 0.004983 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.342185 B = 5617.766668 C = 6469.348370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.072 3.928 3 C -0.343 4.343 4 C 0.337 3.663 5 N -1.026 6.026 6 S 2.732 3.268 7 O -0.946 6.946 8 O -0.940 6.940 9 C -0.765 4.765 10 C -0.135 4.135 11 C -0.047 4.047 12 O -0.166 6.166 13 C 0.116 3.884 14 N -0.333 5.333 15 C 0.254 3.746 16 C -0.542 4.542 17 H 0.068 0.932 18 C 0.066 3.934 19 N -0.890 5.890 20 Si 0.907 3.093 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.280 1.280 24 N -0.284 5.284 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.140 0.860 29 H 0.435 0.565 30 H 0.163 0.837 31 H 0.211 0.789 32 H 0.224 0.776 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 13.584 8.017 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.093 4.093 3 C -0.376 4.376 4 C 0.110 3.890 5 N -0.778 5.778 6 S 2.818 3.182 7 O -0.936 6.936 8 O -0.930 6.930 9 C -0.853 4.853 10 C -0.155 4.155 11 C -0.114 4.114 12 O -0.059 6.059 13 C 0.043 3.957 14 N -0.117 5.117 15 C 0.136 3.864 16 C -0.580 4.580 17 H 0.086 0.914 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.734 3.266 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.205 1.205 24 N -0.109 5.109 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.158 0.842 29 H 0.273 0.727 30 H 0.181 0.819 31 H 0.228 0.772 32 H 0.241 0.759 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.724 12.803 7.601 16.773 hybrid contribution 1.003 0.155 -0.273 1.051 sum -6.720 12.958 7.328 16.333 Atomic orbital electron populations 1.20083 0.87288 1.02927 1.02241 1.21807 0.96447 0.90240 1.00852 1.20592 0.89164 0.99873 1.28021 1.17453 0.86561 0.84466 1.00492 1.52969 1.13187 1.24976 1.86640 1.00961 0.73427 0.70715 0.73106 1.93608 1.37202 1.75601 1.87232 1.93623 1.64357 1.81883 1.53126 1.31973 1.04757 1.25416 1.23108 1.21425 1.01227 1.02658 0.90176 1.24222 0.80973 1.06592 0.99615 1.84106 1.33584 1.65849 1.22355 1.24323 0.96437 0.91321 0.83585 1.49395 1.06694 1.02237 1.53399 1.19722 0.77746 0.89654 0.99246 1.21378 1.13299 1.32070 0.91268 0.91410 1.24944 0.95613 0.94855 0.98328 1.69924 1.19048 1.32714 1.31077 0.86283 0.78503 0.78348 0.83499 1.19433 1.20559 1.20536 1.77402 0.86031 1.21691 1.25745 0.91148 0.90878 0.91112 0.84223 0.72747 0.81909 0.77239 0.75948 0.92322 0.93428 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.44 36.01 0.38 -0.47 16 2 C 0.07 1.29 7.21 -82.44 -0.59 0.70 16 3 C -0.34 -6.00 8.82 -39.75 -0.35 -6.35 16 4 C 0.34 6.60 7.58 -153.40 -1.16 5.44 16 5 N -1.03 -17.57 5.87 31.11 0.18 -17.39 16 6 S 2.73 41.61 5.45 -107.50 -0.59 41.02 16 7 O -0.95 -15.98 17.90 -57.17 -1.02 -17.00 16 8 O -0.94 -15.91 16.03 -57.17 -0.92 -16.82 16 9 C -0.76 -9.79 5.91 -39.71 -0.23 -10.03 16 10 C -0.14 -1.52 10.75 -39.70 -0.43 -1.94 16 11 C -0.05 -0.44 12.09 29.42 0.36 -0.08 16 12 O -0.17 -1.75 10.65 5.69 0.06 -1.69 16 13 C 0.12 1.29 10.57 29.42 0.31 1.61 16 14 N -0.33 -7.50 3.60 -61.64 -0.22 -7.72 16 15 C 0.25 6.27 6.01 -5.20 -0.03 6.24 16 16 C -0.54 -14.60 9.39 -34.44 -0.32 -14.92 16 17 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -24.47 13.29 55.43 0.74 -23.74 16 20 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 N -0.28 -6.19 12.56 33.65 0.42 -5.77 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.14 2.00 4.02 -52.48 -0.21 1.78 16 29 H 0.43 7.25 8.08 -34.47 -0.28 6.98 16 30 H 0.16 1.58 8.06 -52.48 -0.42 1.16 16 31 H 0.21 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.22 1.90 6.29 -52.49 -0.33 1.57 16 33 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.05 1.14 7.48 -51.93 -0.39 0.75 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 321.13 15.07 4.84 4.84 Total: -1.00 -34.05 321.13 -7.00 -41.05 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -3.29 Total: 5.44 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -2.18 Total: -18.12 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 1.12 Total: -54.62 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -1.88 Total: -35.52 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 41.61 SS G_CDS: -0.59 Total: 41.02 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.05 -7.00 -41.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578892883.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.441 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds