Wall clock time and date at job start Tue Mar 31 2020 10:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47539 * 2 1 4 4 H 1.08995 * 109.46749 * 54.27573 * 3 2 1 5 5 C 1.53001 * 109.46622 * 294.27923 * 3 2 1 6 6 C 1.50698 * 109.46830 * 174.99441 * 5 3 2 7 7 C 1.38236 * 119.99472 * 269.72190 * 6 5 3 8 8 C 1.38220 * 120.01136 * 179.76842 * 7 6 5 9 9 C 1.38326 * 119.98908 * 0.50969 * 8 7 6 10 10 Br 1.89097 * 120.01064 * 179.72134 * 9 8 7 11 11 C 1.38324 * 119.97925 * 359.74796 * 9 8 7 12 12 C 1.38221 * 119.98828 * 359.97438 * 11 9 8 13 13 N 1.46898 * 109.47146 * 174.27872 * 3 2 1 14 14 C 1.46893 * 111.00275 * 276.60885 * 13 3 2 15 15 C 1.50698 * 109.47203 * 175.02907 * 14 13 3 16 16 H 1.07998 * 119.99843 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99920 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00135 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00000 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47302 * 89.99941 * 19 17 15 21 21 H 1.48497 * 109.47227 * 210.00008 * 19 17 15 22 22 H 1.48499 * 109.46883 * 329.99938 * 19 17 15 23 23 H 1.09000 * 109.47069 * 66.35726 * 1 2 3 24 24 H 1.09000 * 109.47226 * 186.35697 * 1 2 3 25 25 H 1.09002 * 109.46927 * 306.36012 * 1 2 3 26 26 H 1.09002 * 109.47554 * 239.99491 * 2 1 3 27 27 H 1.09011 * 109.47076 * 119.99604 * 2 1 3 28 28 H 1.08995 * 109.47162 * 295.00125 * 5 3 2 29 29 H 1.09004 * 109.47077 * 55.00334 * 5 3 2 30 30 H 1.08003 * 119.99566 * 0.03043 * 7 6 5 31 31 H 1.08003 * 120.00621 * 180.24009 * 8 7 6 32 32 H 1.08002 * 120.00957 * 179.97438 * 11 9 8 33 33 H 1.08000 * 119.99527 * 179.97438 * 12 11 9 34 34 H 1.00900 * 110.99435 * 152.65572 * 13 3 2 35 35 H 1.09002 * 109.47303 * 295.02904 * 14 13 3 36 36 H 1.09000 * 109.47243 * 55.02784 * 14 13 3 37 37 H 0.97001 * 119.99613 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5955 1.9850 0.8343 5 6 1.6509 2.1210 -1.3150 6 6 2.0444 3.5748 -1.2657 7 6 1.1514 4.5167 -0.7898 8 6 1.5137 5.8496 -0.7400 9 6 2.7661 6.2425 -1.1762 10 35 3.2595 8.0670 -1.1157 11 6 3.6574 5.3004 -1.6573 12 6 3.2963 3.9669 -1.7014 13 7 3.5026 1.4447 0.1381 14 6 3.8985 1.3330 1.5482 15 6 5.3980 1.2157 1.6413 16 1 5.9970 1.2238 0.7427 17 6 6.0051 1.0981 2.8736 18 7 5.2757 1.0888 3.9678 19 14 7.8640 0.9534 2.9890 20 1 8.4600 2.3088 3.1016 21 1 8.2248 0.1530 4.1866 22 1 8.3848 0.2833 1.7704 23 1 -0.3633 0.4121 -0.9414 24 1 -0.3634 -1.0213 0.1138 25 1 -0.3633 0.6093 0.8276 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 2.1662 1.6328 -2.1421 29 1 0.5735 2.0409 -1.4601 30 1 0.1720 4.2104 -0.4529 31 1 0.8173 6.5849 -0.3645 32 1 4.6353 5.6067 -1.9985 33 1 3.9920 3.2313 -2.0774 34 1 3.9045 2.2671 -0.2863 35 1 3.5691 2.2200 2.0894 36 1 3.4369 0.4480 1.9862 37 1 5.7028 1.0057 4.8347 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596065663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:25 Heat of formation + Delta-G solvation = 5.509437 kcal Electronic energy + Delta-G solvation = -17818.751587 eV Core-core repulsion = 15027.144674 eV Total energy + Delta-G solvation = -2791.606913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.57661 -36.91450 -33.39172 -32.64870 -31.54039 -30.98894 -30.25646 -27.51035 -25.75001 -23.69579 -22.85767 -21.76859 -21.09487 -19.52448 -16.69642 -16.35379 -15.53966 -15.25760 -14.79913 -14.64671 -14.15454 -14.04527 -13.52574 -13.11151 -13.00677 -12.62391 -12.26760 -12.01332 -11.74178 -11.45729 -11.27400 -11.18483 -10.94053 -10.79471 -10.76981 -10.54488 -10.41495 -10.30783 -10.13717 -9.77415 -9.15621 -8.98060 -8.47249 -8.45360 -7.28156 -6.00784 -4.02342 1.11448 1.33828 1.62363 3.32966 3.38931 3.43181 3.63444 4.44549 4.75061 4.83513 4.91509 5.04937 5.31067 5.33863 5.35324 5.37952 5.49879 5.62720 5.67133 5.74393 5.89093 5.96502 6.00298 6.18214 6.19464 6.22734 6.32728 6.38038 6.60703 6.65911 6.77983 6.86617 7.29555 7.43033 7.81701 8.16238 8.43998 8.63212 9.06572 9.62393 11.10240 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.011032 B = 0.004554 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.460868 B = 6147.235618 C = 8166.636603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C 0.092 3.908 4 H 0.035 0.965 5 C -0.088 4.088 6 C -0.060 4.060 7 C -0.114 4.114 8 C -0.090 4.090 9 C -0.096 4.096 10 Br -0.063 7.063 11 C -0.085 4.085 12 C -0.108 4.108 13 N -0.688 5.688 14 C 0.196 3.804 15 C -0.510 4.510 16 H 0.061 0.939 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.896 3.104 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.328 0.672 35 H -0.016 1.016 36 H 0.028 0.972 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.698 10.631 -12.604 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.019 4.019 4 H 0.053 0.947 5 C -0.125 4.125 6 C -0.060 4.060 7 C -0.133 4.133 8 C -0.110 4.110 9 C -0.176 4.176 10 Br 0.023 6.977 11 C -0.105 4.105 12 C -0.127 4.127 13 N -0.320 5.320 14 C 0.069 3.931 15 C -0.549 4.549 16 H 0.079 0.921 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.724 3.276 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.001 0.999 36 H 0.046 0.954 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.426 10.629 -12.496 18.920 hybrid contribution 0.729 0.474 0.699 1.115 sum -8.697 11.103 -11.798 18.388 Atomic orbital electron populations 1.21836 0.96791 1.01164 1.01139 1.21496 0.93870 0.96666 1.02911 1.21450 0.91257 0.94951 0.94201 0.94726 1.20971 1.01626 0.90203 0.99721 1.20164 0.93799 0.96205 0.95837 1.21043 1.00034 0.92081 1.00095 1.21037 0.94707 0.96621 0.98658 1.21706 0.97684 0.90488 1.07679 1.96669 1.92747 1.10344 1.97977 1.21118 0.98822 0.92523 0.98012 1.21200 0.96245 0.95391 0.99862 1.60789 1.05297 1.45113 1.20836 1.19556 0.95938 0.95605 0.82006 1.21166 0.91706 1.49606 0.92436 0.92073 1.24979 0.98394 0.95473 0.95705 1.69963 1.35278 1.50832 0.97716 0.86522 0.85469 0.77995 0.77579 1.20750 1.21260 1.19765 0.93102 0.93079 0.93055 0.91780 0.91317 0.90028 0.90453 0.85354 0.85337 0.85026 0.84446 0.85267 0.99867 0.95382 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.53 37.16 0.35 -1.52 16 2 C -0.11 -1.75 5.63 -26.73 -0.15 -1.90 16 3 C 0.09 1.56 2.09 -67.71 -0.14 1.42 16 4 H 0.03 0.65 7.88 -51.93 -0.41 0.24 16 5 C -0.09 -1.16 4.86 -27.88 -0.14 -1.30 16 6 C -0.06 -0.81 4.83 -104.62 -0.51 -1.32 16 7 C -0.11 -1.44 9.70 -39.59 -0.38 -1.83 16 8 C -0.09 -1.14 9.79 -39.56 -0.39 -1.53 16 9 C -0.10 -1.28 6.22 -39.52 -0.25 -1.52 16 10 Br -0.06 -0.75 33.70 -68.01 -2.29 -3.04 16 11 C -0.08 -1.14 9.79 -39.56 -0.39 -1.52 16 12 C -0.11 -1.49 8.02 -39.59 -0.32 -1.80 16 13 N -0.69 -14.44 6.26 -108.00 -0.68 -15.12 16 14 C 0.20 5.14 5.22 -4.98 -0.03 5.12 16 15 C -0.51 -14.55 9.36 -34.44 -0.32 -14.88 16 16 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 19 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H 0.05 0.54 6.79 -51.93 -0.35 0.19 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.07 1.26 7.18 -51.92 -0.37 0.89 16 28 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 29 H 0.08 0.87 6.45 -51.93 -0.34 0.53 16 30 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 31 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 33 H 0.14 1.79 7.56 -52.49 -0.40 1.40 16 34 H 0.33 6.61 5.58 -39.29 -0.22 6.39 16 35 H -0.02 -0.47 8.14 -51.93 -0.42 -0.89 16 36 H 0.03 0.79 7.15 -51.93 -0.37 0.42 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 324.17 15.07 4.89 4.89 Total: -1.00 -30.23 324.17 -10.50 -40.72 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.38 Total: 3.10 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -2.75 Total: -21.07 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.06 Total: -41.47 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 35 Polarization: -0.75 SS G_CDS: -2.29 Total: -3.04 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.23 -10.50 -40.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596065663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.234 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds