Wall clock time and date at job start Tue Mar 31 2020 10:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46864 * 2 1 4 4 H 1.08998 * 109.47658 * 305.71139 * 3 2 1 5 5 C 1.53004 * 109.47117 * 65.71666 * 3 2 1 6 6 C 1.50700 * 109.46997 * 184.99801 * 5 3 2 7 7 C 1.38239 * 119.99269 * 269.72173 * 6 5 3 8 8 C 1.38216 * 120.01172 * 179.77026 * 7 6 5 9 9 C 1.38326 * 119.99092 * 0.50425 * 8 7 6 10 10 Br 1.89099 * 120.01132 * 179.72624 * 9 8 7 11 11 C 1.38326 * 119.97737 * 359.75134 * 9 8 7 12 12 C 1.38218 * 119.98831 * 359.97438 * 11 9 8 13 13 N 1.46902 * 109.46907 * 185.71341 * 3 2 1 14 14 C 1.46898 * 110.99840 * 85.07933 * 13 3 2 15 15 C 1.50708 * 109.47143 * 175.99396 * 14 13 3 16 16 H 1.08004 * 119.99725 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00075 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00295 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00083 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46757 * 60.00035 * 19 17 15 21 21 H 1.48498 * 109.47358 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47005 * 300.00063 * 19 17 15 23 23 H 1.09001 * 109.46817 * 174.28223 * 1 2 3 24 24 H 1.08998 * 109.47589 * 54.27864 * 1 2 3 25 25 H 1.09000 * 109.47321 * 294.27888 * 1 2 3 26 26 H 1.08996 * 109.47394 * 120.00164 * 2 1 3 27 27 H 1.09001 * 109.47147 * 240.00217 * 2 1 3 28 28 H 1.08999 * 109.47069 * 304.99550 * 5 3 2 29 29 H 1.08998 * 109.47125 * 64.99863 * 5 3 2 30 30 H 1.08000 * 119.98962 * 0.02562 * 7 6 5 31 31 H 1.08003 * 120.00556 * 180.23809 * 8 7 6 32 32 H 1.08000 * 120.00468 * 180.02562 * 11 9 8 33 33 H 1.08005 * 119.99423 * 179.97438 * 12 11 9 34 34 H 1.00906 * 111.00255 * 209.02869 * 13 3 2 35 35 H 1.09001 * 109.47095 * 295.99073 * 14 13 3 36 36 H 1.09000 * 109.47264 * 55.99851 * 14 13 3 37 37 H 0.97004 * 120.00173 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5955 1.9851 -0.8344 5 6 1.6506 2.1211 1.3149 6 6 2.0441 3.5750 1.2656 7 6 3.2937 3.9680 1.7072 8 6 3.6568 5.3007 1.6577 9 6 2.7657 6.2427 1.1760 10 35 3.2590 8.0672 1.1153 11 6 1.5135 5.8497 0.7392 12 6 1.1534 4.5160 0.7837 13 7 3.5025 1.4448 -0.1379 14 6 3.8981 1.3734 -1.5508 15 6 5.3978 1.4769 -1.6584 16 1 5.9970 1.5846 -0.7663 17 6 6.0048 1.4332 -2.8955 18 7 5.2753 1.3006 -3.9817 19 14 7.8637 1.5608 -3.0288 20 1 8.4915 0.4417 -2.2813 21 1 8.2638 1.4875 -4.4570 22 1 8.3135 2.8540 -2.4540 23 1 -0.3633 -1.0226 -0.1024 24 1 -0.3634 0.6000 -0.8343 25 1 -0.3634 0.4225 0.9368 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 0.5733 2.0410 1.4600 29 1 2.1659 1.6330 2.1421 30 1 3.9879 3.2330 2.0870 31 1 4.6345 5.6072 1.9992 32 1 0.8175 6.5847 0.3626 33 1 0.1755 4.2090 0.4431 34 1 3.9067 2.2534 0.3103 35 1 3.5683 0.4241 -1.9729 36 1 3.4370 2.1948 -2.0992 37 1 5.7023 1.2702 -4.8521 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596065664.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:26 Heat of formation + Delta-G solvation = 5.227066 kcal Electronic energy + Delta-G solvation = -17852.803775 eV Core-core repulsion = 15061.184617 eV Total energy + Delta-G solvation = -2791.619157 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.56272 -36.90653 -33.40015 -32.64370 -31.53984 -30.97514 -30.24070 -27.50354 -25.73974 -23.68639 -22.84677 -21.76356 -21.09197 -19.54310 -16.68907 -16.40059 -15.52587 -15.24435 -14.75274 -14.59923 -14.15344 -14.04787 -13.51134 -13.10566 -13.00193 -12.62155 -12.25435 -12.02187 -11.76313 -11.44477 -11.27881 -11.17530 -10.93263 -10.78885 -10.77862 -10.57431 -10.39279 -10.29164 -10.14572 -9.78756 -9.15220 -8.96395 -8.46929 -8.45543 -7.28199 -6.01829 -4.03755 1.13201 1.35696 1.64072 3.34111 3.37916 3.40728 3.65172 4.43773 4.76423 4.84407 4.93141 5.05402 5.30935 5.34308 5.35026 5.39157 5.50682 5.62543 5.68101 5.75135 5.89645 5.97348 6.00706 6.18863 6.20160 6.24210 6.32630 6.38542 6.61142 6.66257 6.77004 6.87996 7.29794 7.47706 7.79170 8.15347 8.41208 8.64446 9.05179 9.61034 11.09305 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.010506 B = 0.004844 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.581740 B = 5779.055199 C = 7931.433451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C 0.091 3.909 4 H 0.036 0.964 5 C -0.088 4.088 6 C -0.060 4.060 7 C -0.108 4.108 8 C -0.084 4.084 9 C -0.096 4.096 10 Br -0.063 7.063 11 C -0.090 4.090 12 C -0.113 4.113 13 N -0.688 5.688 14 C 0.196 3.804 15 C -0.515 4.515 16 H 0.060 0.940 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.330 0.670 35 H 0.028 0.972 36 H -0.016 1.016 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.669 9.990 12.626 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.019 4.019 4 H 0.054 0.946 5 C -0.126 4.126 6 C -0.060 4.060 7 C -0.127 4.127 8 C -0.104 4.104 9 C -0.175 4.175 10 Br 0.022 6.978 11 C -0.110 4.110 12 C -0.132 4.132 13 N -0.321 5.321 14 C 0.070 3.930 15 C -0.554 4.554 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.724 3.276 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.155 0.845 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.046 0.954 36 H 0.002 0.998 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.399 9.987 12.493 18.551 hybrid contribution 0.743 0.613 -0.670 1.174 sum -8.655 10.600 11.823 18.085 Atomic orbital electron populations 1.21837 0.96788 1.01149 1.01177 1.21488 0.93890 0.96710 1.02816 1.21481 0.91254 0.94916 0.94276 0.94564 1.20980 1.01638 0.90244 0.99710 1.20154 0.93843 0.96180 0.95839 1.21186 0.96209 0.95391 0.99875 1.21112 0.98792 0.92537 0.97979 1.21701 0.97655 0.90477 1.07682 1.96667 1.92756 1.10351 1.97981 1.21032 0.94724 0.96606 0.98656 1.21035 1.00044 0.92076 1.00074 1.60824 1.05234 1.46616 1.19450 1.19557 0.95568 0.95917 0.81993 1.21140 0.91791 1.49935 0.92509 0.92204 1.24966 0.98391 0.95333 0.95724 1.69951 1.35392 1.50398 0.97900 0.86585 0.85442 0.78661 0.76879 1.20139 1.21315 1.20264 0.93091 0.93039 0.93084 0.91814 0.91403 0.90448 0.90069 0.84502 0.85037 0.85344 0.85368 0.85127 0.95396 0.99786 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.55 37.16 0.35 -1.51 16 2 C -0.11 -1.73 5.65 -26.73 -0.15 -1.88 16 3 C 0.09 1.55 2.10 -67.71 -0.14 1.41 16 4 H 0.04 0.68 7.73 -51.93 -0.40 0.28 16 5 C -0.09 -1.18 4.85 -27.88 -0.14 -1.31 16 6 C -0.06 -0.82 4.83 -104.62 -0.51 -1.33 16 7 C -0.11 -1.50 8.04 -39.59 -0.32 -1.82 16 8 C -0.08 -1.15 9.79 -39.56 -0.39 -1.54 16 9 C -0.10 -1.29 6.22 -39.52 -0.25 -1.54 16 10 Br -0.06 -0.77 33.70 -68.01 -2.29 -3.06 16 11 C -0.09 -1.16 9.79 -39.56 -0.39 -1.54 16 12 C -0.11 -1.46 9.70 -39.59 -0.38 -1.85 16 13 N -0.69 -14.49 6.33 -107.99 -0.68 -15.17 16 14 C 0.20 5.17 5.28 -4.97 -0.03 5.14 16 15 C -0.52 -14.67 9.27 -34.44 -0.32 -14.99 16 16 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 19 Si 0.90 21.89 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.54 6.76 -51.93 -0.35 0.19 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.23 7.41 -51.93 -0.38 0.84 16 28 H 0.08 0.87 6.44 -51.93 -0.33 0.54 16 29 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 30 H 0.14 1.81 7.55 -52.49 -0.40 1.41 16 31 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 34 H 0.33 6.68 5.46 -39.29 -0.21 6.46 16 35 H 0.03 0.79 7.45 -51.93 -0.39 0.40 16 36 H -0.02 -0.45 7.96 -51.93 -0.41 -0.86 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 324.25 15.07 4.89 4.89 Total: -1.00 -30.19 324.25 -10.50 -40.70 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.38 Total: 3.30 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -2.74 Total: -21.21 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.05 Total: -41.48 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -2.29 Total: -3.06 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.19 -10.50 -40.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596065664.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.922 kcal (2) G-P(sol) polarization free energy of solvation -30.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds