Wall clock time and date at job start Tue Mar 31 2020 09:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21335 * 119.99653 * 2 1 4 4 C 1.46547 * 120.00008 * 180.02562 * 2 1 3 5 5 C 1.37105 * 123.03504 * 0.02562 * 4 2 1 6 6 S 1.70590 * 110.50231 * 180.23336 * 5 4 2 7 7 C 1.75670 * 91.90754 * 359.65552 * 6 5 4 8 8 C 1.46588 * 125.00514 * 180.02562 * 7 6 5 9 9 O 1.21599 * 120.00258 * 180.33720 * 8 7 6 10 10 O 1.34871 * 119.99885 * 0.33159 * 8 7 6 11 11 C 1.45203 * 117.00126 * 179.97438 * 10 8 7 12 12 C 1.50692 * 109.47167 * 180.02562 * 11 10 8 13 13 O 1.21287 * 120.00370 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00259 * 180.02562 * 12 11 10 15 15 C 1.46492 * 120.00102 * 180.02562 * 14 12 11 16 16 C 1.50704 * 109.47194 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99471 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00463 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00572 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99853 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47099 * 89.99717 * 20 18 16 22 22 H 1.48505 * 109.47074 * 209.99395 * 20 18 16 23 23 H 1.48499 * 109.46997 * 329.99745 * 20 18 16 24 24 C 1.34818 * 109.99143 * 0.34548 * 7 6 5 25 25 H 1.09010 * 109.46936 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46937 * 299.99182 * 1 2 3 27 27 H 1.08990 * 109.47671 * 59.99641 * 1 2 3 28 28 H 1.08002 * 124.74474 * 359.96208 * 5 4 2 29 29 H 1.08994 * 109.46957 * 300.00455 * 11 10 8 30 30 H 1.09007 * 109.46583 * 60.00416 * 11 10 8 31 31 H 0.96997 * 119.99639 * 0.02562 * 14 12 11 32 32 H 1.08999 * 109.47393 * 300.00260 * 15 14 12 33 33 H 1.08998 * 109.47410 * 60.00191 * 15 14 12 34 34 H 0.96998 * 120.00249 * 180.02562 * 19 18 16 35 35 H 1.07998 * 123.17346 * 179.76431 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0508 0.0000 4 6 2.2398 -1.2691 -0.0006 5 6 1.6181 -2.4911 -0.0016 6 16 2.7713 -3.7482 0.0045 7 6 4.1046 -2.6044 -0.0021 8 6 5.5246 -2.9682 -0.0013 9 8 6.3750 -2.0990 0.0001 10 8 5.8879 -4.2671 -0.0019 11 6 7.3115 -4.5534 -0.0017 12 6 7.5238 -6.0453 -0.0031 13 8 6.5693 -6.7937 -0.0047 14 7 8.7743 -6.5481 -0.0026 15 6 8.9806 -7.9984 -0.0046 16 6 10.4581 -8.2956 -0.0042 17 1 11.1718 -7.4851 -0.0022 18 6 10.8985 -9.6021 -0.0053 19 7 12.1878 -9.8615 -0.0055 20 14 9.6638 -11.0039 -0.0080 21 1 9.3379 -11.3737 -1.4088 22 1 10.2460 -12.1777 0.6911 23 1 8.4262 -10.5748 0.6915 24 6 3.6295 -1.3427 -0.0008 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8898 28 1 0.5480 -2.6373 -0.0016 29 1 7.7692 -4.1207 -0.8912 30 1 7.7686 -4.1218 0.8888 31 1 9.5376 -5.9496 -0.0010 32 1 8.5222 -8.4319 0.8842 33 1 8.5240 -8.4292 -0.8957 34 1 12.4976 -10.7806 -0.0066 35 1 4.2673 -0.4711 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730356191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:36 Heat of formation + Delta-G solvation = -122.830435 kcal Electronic energy + Delta-G solvation = -21548.260350 eV Core-core repulsion = 17831.726500 eV Total energy + Delta-G solvation = -3716.533850 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.74597 -40.08150 -38.93758 -37.48234 -36.37330 -34.42881 -32.47485 -32.01335 -30.02902 -29.15482 -27.28584 -25.99481 -23.75289 -22.10412 -20.63027 -20.18263 -19.48552 -18.81786 -17.60566 -17.15985 -16.82436 -16.76678 -16.27855 -15.54364 -15.51368 -15.18310 -15.02182 -14.87347 -14.19133 -13.73402 -13.62755 -13.38103 -13.10043 -13.04921 -12.75639 -12.64264 -12.53048 -12.41344 -12.13440 -11.60156 -11.11042 -10.96855 -10.92857 -10.80444 -10.21761 -10.03361 -9.57902 -9.56945 -9.41960 -9.14476 -8.85098 -8.32226 -6.26816 -4.30238 -0.21958 0.85380 0.87575 1.31076 2.12521 2.24147 2.68402 2.95974 3.22810 3.29763 3.37041 3.61075 3.82625 4.24411 4.28114 4.53331 4.58244 4.63509 4.91300 4.93608 4.99830 5.06679 5.10232 5.15367 5.18163 5.34171 5.56029 5.67006 6.06009 6.68451 6.96765 7.03554 7.06507 7.27778 7.39541 8.00085 8.36949 8.62816 8.75356 9.31889 10.84890 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.039561 B = 0.002257 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.599491 B =12404.579198 C =13086.426723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.415 3.585 3 O -0.457 6.457 4 C -0.206 4.206 5 C -0.195 4.195 6 S 0.323 5.677 7 C -0.268 4.268 8 C 0.538 3.462 9 O -0.493 6.493 10 O -0.327 6.327 11 C 0.051 3.949 12 C 0.503 3.497 13 O -0.536 6.536 14 N -0.698 5.698 15 C 0.222 3.778 16 C -0.547 4.547 17 H 0.081 0.919 18 C 0.078 3.922 19 N -0.890 5.890 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.005 4.005 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.185 0.815 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.400 0.600 32 H 0.028 0.972 33 H 0.024 0.976 34 H 0.269 0.731 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.224 16.410 0.052 29.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.291 3.709 3 O -0.332 6.332 4 C -0.221 4.221 5 C -0.335 4.335 6 S 0.592 5.408 7 C -0.386 4.386 8 C 0.381 3.619 9 O -0.383 6.383 10 O -0.243 6.243 11 C -0.026 4.026 12 C 0.286 3.714 13 O -0.414 6.414 14 N -0.349 5.349 15 C 0.101 3.899 16 C -0.585 4.585 17 H 0.099 0.901 18 C -0.126 4.126 19 N -0.527 5.527 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.185 1.185 24 C -0.036 4.036 25 H 0.099 0.901 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.202 0.798 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.234 0.766 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -24.234 14.842 0.062 28.418 hybrid contribution 0.108 1.022 -0.031 1.029 sum -24.125 15.865 0.031 28.874 Atomic orbital electron populations 1.22183 0.93301 1.04666 1.05202 1.21908 0.91447 0.86646 0.70932 1.90596 1.72021 1.34006 1.36603 1.19676 0.93585 0.95456 1.13420 1.26715 1.06475 0.97853 1.02415 1.83812 0.91003 1.04586 1.61368 1.23110 0.95501 0.98281 1.21691 1.19626 0.87720 0.81222 0.73313 1.90914 1.51436 1.50120 1.45797 1.86598 1.27698 1.26043 1.83912 1.22893 0.78477 0.95993 1.05250 1.19873 0.84519 0.88537 0.78497 1.90700 1.40777 1.60143 1.49776 1.46066 1.05835 1.10588 1.72369 1.19562 0.97857 0.75401 0.97097 1.21062 0.89368 0.94312 1.53746 0.90102 1.24791 0.95329 0.98680 0.93785 1.69873 1.13290 1.20460 1.49059 0.86813 0.81941 0.81813 0.79101 1.19781 1.20826 1.18474 1.20482 0.94130 0.96803 0.92204 0.90086 0.88554 0.88557 0.79763 0.87941 0.87936 0.76632 0.95381 0.95838 0.92158 0.81860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.73 10.23 36.01 0.37 -0.36 16 2 C 0.41 3.31 7.23 -30.96 -0.22 3.08 16 3 O -0.46 -5.41 17.43 5.51 0.10 -5.32 16 4 C -0.21 -1.66 5.81 -106.61 -0.62 -2.28 16 5 C -0.19 -1.09 10.30 30.32 0.31 -0.78 16 6 S 0.32 2.57 22.86 -107.50 -2.46 0.11 16 7 C -0.27 -2.96 6.37 -37.43 -0.24 -3.20 16 8 C 0.54 7.37 7.93 34.10 0.27 7.64 16 9 O -0.49 -7.60 16.58 -19.34 -0.32 -7.93 16 10 O -0.33 -4.85 9.59 -47.65 -0.46 -5.31 16 11 C 0.05 0.72 5.96 36.00 0.21 0.94 16 12 C 0.50 9.24 7.91 -10.99 -0.09 9.15 16 13 O -0.54 -11.87 16.50 -14.11 -0.23 -12.10 16 14 N -0.70 -13.47 5.55 -61.48 -0.34 -13.82 16 15 C 0.22 5.28 4.50 -5.20 -0.02 5.25 16 16 C -0.55 -14.61 9.83 -34.44 -0.34 -14.95 16 17 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 18 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 19 N -0.89 -25.97 13.96 55.43 0.77 -25.20 16 20 Si 0.88 20.90 27.47 -169.99 -4.67 16.23 16 21 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 24 C -0.01 -0.06 9.47 -40.45 -0.38 -0.44 16 25 H 0.08 0.11 6.02 -51.92 -0.31 -0.20 16 26 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.19 0.33 6.55 -52.49 -0.34 -0.02 16 29 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.40 6.64 8.32 -40.82 -0.34 6.30 16 32 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 33 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.16 1.80 7.94 -52.49 -0.42 1.38 16 LS Contribution 333.99 15.07 5.03 5.03 Total: -1.00 -35.07 333.99 -6.87 -41.94 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -3.45 Total: 0.23 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -0.85 Total: 6.12 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.43 Total: -39.01 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.91 Total: -30.66 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.46 Total: 0.11 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.07 -6.87 -41.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730356191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.891 kcal (2) G-P(sol) polarization free energy of solvation -35.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds