Wall clock time and date at job start Tue Mar 31 2020 10:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47008 * 2 1 4 4 C 1.50700 * 109.46775 * 239.99625 * 2 1 3 5 5 O 1.21289 * 120.00513 * 277.86396 * 4 2 1 6 6 N 1.34783 * 119.99375 * 97.86556 * 4 2 1 7 7 C 1.37096 * 120.00392 * 4.39166 * 6 4 2 8 8 H 1.08002 * 119.99572 * 342.41612 * 7 6 4 9 9 C 1.38945 * 120.00030 * 162.41249 * 7 6 4 10 10 N 1.31411 * 120.00321 * 344.99661 * 9 7 6 11 11 Si 1.86802 * 120.00093 * 164.99641 * 9 7 6 12 12 H 1.48500 * 109.47051 * 90.00266 * 11 9 7 13 13 H 1.48498 * 109.47355 * 210.00180 * 11 9 7 14 14 H 1.48497 * 109.47015 * 330.00188 * 11 9 7 15 15 C 1.46506 * 119.99480 * 184.39083 * 6 4 2 16 16 C 1.50698 * 109.47089 * 275.29236 * 15 6 4 17 17 O 1.20817 * 120.00315 * 359.97438 * 16 15 6 18 18 O 1.34233 * 119.99731 * 180.02562 * 16 15 6 19 19 C 1.50700 * 109.46920 * 119.99914 * 2 1 3 20 20 C 1.38267 * 119.99210 * 60.02343 * 19 2 1 21 21 C 1.38220 * 120.02461 * 179.97438 * 20 19 2 22 22 C 1.38234 * 120.01343 * 359.95107 * 21 20 19 23 23 C 1.38328 * 119.98751 * 359.77378 * 22 21 20 24 24 Cl 1.73598 * 120.01441 * 180.27589 * 23 22 21 25 25 C 1.38186 * 119.99425 * 239.99360 * 19 2 1 26 26 H 1.08993 * 109.47324 * 175.28671 * 1 2 3 27 27 H 1.09000 * 109.46621 * 295.28772 * 1 2 3 28 28 H 1.08996 * 109.46794 * 55.28263 * 1 2 3 29 29 H 0.96998 * 120.00390 * 180.02562 * 10 9 7 30 30 H 1.08993 * 109.47261 * 35.29355 * 15 6 4 31 31 H 1.09004 * 109.46657 * 155.29064 * 15 6 4 32 32 H 0.96701 * 116.99648 * 180.02562 * 18 16 15 33 33 H 1.08001 * 119.99036 * 359.97330 * 20 19 2 34 34 H 1.08004 * 119.99301 * 179.97438 * 21 20 19 35 35 H 1.08006 * 120.00698 * 180.02562 * 22 21 20 36 36 H 1.08007 * 120.00656 * 0.03465 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.0990 -1.9214 -1.2469 6 7 2.4075 -0.0002 -2.3127 7 6 2.4179 1.3699 -2.2637 8 1 1.8713 1.8866 -1.4886 9 6 3.1317 2.0936 -3.2110 10 7 4.0237 1.4899 -3.9638 11 14 2.8232 3.9247 -3.4145 12 1 3.7303 4.6824 -2.5153 13 1 3.0819 4.3167 -4.8232 14 1 1.4124 4.2306 -3.0666 15 6 2.8042 -0.6922 -3.5416 16 6 4.2603 -1.0712 -3.4569 17 8 4.9011 -0.7915 -2.4716 18 8 4.8456 -1.7186 -4.4768 19 6 2.0324 -0.7104 1.2305 20 6 1.6986 -2.0343 1.4489 21 6 2.1594 -2.6867 2.5770 22 6 2.9550 -2.0161 3.4870 23 6 3.2939 -0.6933 3.2662 24 17 4.2990 0.1474 4.4049 25 6 2.8269 -0.0388 2.1400 26 1 -0.3633 -1.0241 -0.0844 27 1 -0.3632 0.4390 0.9292 28 1 -0.3633 0.5853 -0.8447 29 1 4.5223 1.9952 -4.6249 30 1 2.2011 -1.5919 -3.6627 31 1 2.6493 -0.0332 -4.3958 32 1 5.7814 -1.9410 -4.3763 33 1 1.0776 -2.5589 0.7378 34 1 1.8980 -3.7207 2.7473 35 1 3.3153 -2.5261 4.3683 36 1 3.0875 0.9954 1.9693 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736201674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:40 Heat of formation + Delta-G solvation = -100.696730 kcal Electronic energy + Delta-G solvation = -23982.065150 eV Core-core repulsion = 20264.447383 eV Total energy + Delta-G solvation = -3717.617767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.82092 -38.98240 -37.95123 -36.27262 -35.22013 -34.54200 -33.48546 -31.62180 -30.48299 -29.23675 -27.82907 -25.01534 -23.96436 -22.35988 -21.75970 -20.35667 -19.19297 -17.32247 -16.89858 -16.57340 -16.23621 -15.53482 -15.17599 -14.99772 -14.41109 -14.31629 -14.25283 -13.66468 -13.61747 -13.32921 -13.03542 -12.76641 -12.17409 -11.88588 -11.74181 -11.50818 -11.47334 -11.39803 -11.19413 -11.02867 -10.96139 -10.87550 -10.54906 -10.51995 -10.26983 -10.15730 -9.62876 -9.08911 -8.81312 -8.41118 -8.29178 -8.02944 -6.55462 -4.08783 1.49799 1.56358 2.33467 3.03719 3.13927 3.16442 3.54284 3.71900 3.95139 3.99531 4.24844 4.64720 4.91502 5.06381 5.10771 5.34657 5.59377 5.63992 5.69763 5.78850 5.83279 6.07451 6.15818 6.20243 6.32520 6.37817 6.45394 6.52059 6.61084 6.69534 6.70198 6.98491 7.11955 7.27212 7.51614 7.65287 8.15490 8.90834 9.19217 9.29978 9.68019 10.51399 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.004971 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.744943 B = 5631.264066 C = 6190.004340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.065 4.065 3 H 0.105 0.895 4 C 0.480 3.520 5 O -0.594 6.594 6 N -0.428 5.428 7 C -0.334 4.334 8 H 0.106 0.894 9 C 0.037 3.963 10 N -0.876 5.876 11 Si 0.928 3.072 12 H -0.277 1.277 13 H -0.281 1.281 14 H -0.268 1.268 15 C 0.159 3.841 16 C 0.500 3.500 17 O -0.511 6.511 18 O -0.536 6.536 19 C -0.045 4.045 20 C -0.077 4.077 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.039 4.039 24 Cl -0.085 7.085 25 C -0.102 4.102 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.273 0.727 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.389 0.611 33 H 0.137 0.863 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.440 -2.491 6.884 8.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.086 4.086 3 H 0.123 0.877 4 C 0.269 3.731 5 O -0.479 6.479 6 N -0.146 5.146 7 C -0.461 4.461 8 H 0.124 0.876 9 C -0.168 4.168 10 N -0.515 5.515 11 Si 0.754 3.246 12 H -0.203 1.203 13 H -0.206 1.206 14 H -0.192 1.192 15 C 0.033 3.967 16 C 0.341 3.659 17 O -0.397 6.397 18 O -0.347 6.347 19 C -0.046 4.046 20 C -0.095 4.095 21 C -0.136 4.136 22 C -0.139 4.139 23 C -0.066 4.066 24 Cl -0.056 7.056 25 C -0.121 4.121 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.146 0.854 32 H 0.245 0.755 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.426 -2.746 7.028 8.748 hybrid contribution 1.111 1.057 -0.078 1.535 sum -3.316 -1.689 6.950 7.883 Atomic orbital electron populations 1.21655 0.92703 1.02407 1.02088 1.20138 0.96883 1.00895 0.90649 0.87673 1.19859 0.82345 0.87121 0.83787 1.90523 1.60706 1.14248 1.82473 1.43369 1.56211 1.06294 1.08724 1.19675 1.30982 0.79831 1.15621 0.87630 1.25246 0.94050 1.00671 0.96784 1.69737 1.21271 1.37429 1.23058 0.85910 0.78987 0.81800 0.77912 1.20262 1.20626 1.19209 1.20487 0.87461 0.97522 0.91219 1.23680 0.91488 0.71724 0.79013 1.90564 1.65126 1.50682 1.33289 1.84524 1.30242 1.72123 1.47810 1.19558 0.96299 0.94267 0.94456 1.21286 0.98623 0.93848 0.95741 1.21070 0.98320 0.99804 0.94401 1.20931 0.99720 0.92721 1.00484 1.20769 0.98941 0.93556 0.93322 1.98338 1.68411 1.78331 1.60534 1.20978 0.97637 1.00698 0.92771 0.92279 0.92308 0.91485 0.91576 0.90432 0.85437 0.75470 0.84570 0.85544 0.85639 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.92 37.16 0.33 -1.68 16 2 C -0.06 -1.22 2.39 -92.92 -0.22 -1.44 16 3 H 0.11 2.01 5.61 -51.93 -0.29 1.72 16 4 C 0.48 11.05 6.40 -10.98 -0.07 10.98 16 5 O -0.59 -14.70 14.36 5.55 0.08 -14.62 16 6 N -0.43 -10.30 2.17 -116.09 -0.25 -10.55 16 7 C -0.33 -7.98 9.03 -14.94 -0.13 -8.12 16 8 H 0.11 2.33 5.93 -52.49 -0.31 2.01 16 9 C 0.04 0.88 5.04 -17.47 -0.09 0.79 16 10 N -0.88 -22.10 8.93 55.50 0.50 -21.61 16 11 Si 0.93 18.67 29.58 -169.99 -5.03 13.64 16 12 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 13 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 14 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 15 C 0.16 3.71 5.11 -5.19 -0.03 3.68 16 16 C 0.50 12.19 6.45 36.00 0.23 12.42 16 17 O -0.51 -14.28 16.85 -18.74 -0.32 -14.60 16 18 O -0.54 -10.84 13.42 -39.27 -0.53 -11.37 16 19 C -0.04 -0.82 4.73 -104.63 -0.50 -1.31 16 20 C -0.08 -1.31 8.10 -39.58 -0.32 -1.63 16 21 C -0.12 -1.73 10.05 -39.59 -0.40 -2.12 16 22 C -0.12 -1.73 9.83 -39.55 -0.39 -2.12 16 23 C -0.04 -0.62 6.32 -39.50 -0.25 -0.87 16 24 Cl -0.08 -1.21 28.96 -51.86 -1.50 -2.71 16 25 C -0.10 -1.75 9.46 -39.55 -0.37 -2.13 16 26 H 0.06 0.90 7.56 -51.93 -0.39 0.50 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.08 1.69 7.65 -51.93 -0.40 1.29 16 31 H 0.13 2.97 6.27 -51.93 -0.33 2.65 16 32 H 0.39 6.19 9.10 45.56 0.41 6.60 16 33 H 0.14 2.37 6.68 -52.49 -0.35 2.02 16 34 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 35 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 36 H 0.13 2.16 7.95 -52.48 -0.42 1.74 16 LS Contribution 324.87 15.07 4.90 4.90 Total: -1.00 -30.64 324.87 -7.25 -37.89 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -2.90 Total: 12.57 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -2.20 Total: 6.45 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.24 Total: -32.16 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -0.76 Total: -40.58 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.50 Total: -2.71 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.64 -7.25 -37.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736201674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.806 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds