Wall clock time and date at job start Tue Mar 31 2020 10:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 119.99488 * 2 1 4 4 N 1.46499 * 109.46668 * 125.00538 * 3 2 1 5 5 C 1.46507 * 119.99405 * 269.99467 * 4 3 2 6 6 C 1.50706 * 109.46903 * 269.99894 * 5 4 3 7 7 H 1.07998 * 119.99994 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99525 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99451 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00375 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47344 * 89.99689 * 10 8 6 12 12 H 1.48497 * 109.47389 * 209.99896 * 10 8 6 13 13 H 1.48505 * 109.47154 * 329.99677 * 10 8 6 14 14 C 1.34772 * 120.00643 * 89.99589 * 4 3 2 15 15 S 1.71194 * 120.00337 * 179.97438 * 14 4 3 16 16 N 1.34774 * 119.99771 * 0.02562 * 14 4 3 17 17 C 1.39978 * 120.00172 * 185.52030 * 16 14 4 18 18 C 1.39307 * 120.47405 * 41.29967 * 17 16 14 19 19 C 1.38458 * 118.37794 * 179.97438 * 18 17 16 20 20 C 1.38435 * 119.22317 * 0.02562 * 19 18 17 21 21 Cl 1.73598 * 119.55554 * 179.97438 * 20 19 18 22 22 N 1.31935 * 120.88292 * 0.27719 * 20 19 18 23 23 C 1.31854 * 121.78265 * 359.42891 * 22 20 19 24 24 H 1.08006 * 119.99798 * 179.97438 * 1 2 3 25 25 H 1.07996 * 120.00153 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.00153 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47661 * 5.00106 * 3 2 1 28 28 H 1.08999 * 109.46844 * 244.99807 * 3 2 1 29 29 H 1.08992 * 109.47411 * 30.00162 * 5 4 3 30 30 H 1.09001 * 109.46972 * 150.00561 * 5 4 3 31 31 H 0.97007 * 120.00023 * 180.02562 * 9 8 6 32 32 H 0.97001 * 120.00356 * 5.51047 * 16 14 4 33 33 H 1.08003 * 120.80914 * 359.96273 * 18 17 16 34 34 H 1.07998 * 120.38947 * 180.02562 * 19 18 17 35 35 H 1.07996 * 119.66120 * 180.29774 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5587 1.8649 2.4248 6 6 2.8442 3.3437 2.4804 7 1 3.3033 3.8371 1.6365 8 6 2.5192 4.0665 3.6086 9 7 2.7679 5.3570 3.6569 10 14 1.7259 3.2129 5.0685 11 1 2.7825 2.7226 5.9895 12 1 0.8495 4.1727 5.7869 13 1 0.9147 2.0648 4.5898 14 6 4.2496 0.8662 0.9824 15 16 5.3369 0.8981 2.3044 16 7 4.6499 0.3764 -0.2076 17 6 5.9136 -0.2127 -0.3328 18 6 6.4019 -1.0556 0.6630 19 6 7.6571 -1.6152 0.4943 20 6 8.3802 -1.3209 -0.6488 21 17 9.9551 -2.0173 -0.8688 22 7 7.8910 -0.5135 -1.5705 23 6 6.6981 0.0353 -1.4507 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 1.4887 1.6966 2.5459 30 1 3.0989 1.3604 3.2259 31 1 2.5396 5.8656 4.4508 32 1 4.0623 0.4318 -0.9774 33 1 5.8158 -1.2672 1.5451 34 1 8.0671 -2.2737 1.2458 35 1 6.3293 0.6874 -2.2285 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793247777.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:20 Heat of formation + Delta-G solvation = 88.890486 kcal Electronic energy + Delta-G solvation = -20533.487757 eV Core-core repulsion = 17299.136732 eV Total energy + Delta-G solvation = -3234.351026 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 311.055 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.70932 -39.13982 -36.82802 -35.91405 -33.91219 -32.60740 -32.26965 -30.15538 -28.34208 -26.99344 -24.29807 -23.78246 -22.36739 -21.41409 -20.13644 -18.47771 -17.89845 -17.29959 -17.08209 -16.49429 -15.64682 -15.45123 -14.85249 -14.45846 -14.36599 -14.30635 -13.49417 -13.33324 -13.23223 -12.66082 -12.49019 -12.16279 -12.00915 -11.87088 -11.50214 -11.35895 -11.16850 -10.73247 -10.65604 -10.46885 -9.98935 -9.84399 -9.74493 -9.61831 -9.26603 -8.68293 -8.21679 -7.26985 -6.61107 -6.18066 -4.18889 0.69478 1.17170 1.74380 1.80068 1.91010 2.41526 2.91200 3.23625 3.28073 3.34364 3.47772 3.59279 4.31559 4.38192 4.64796 4.73576 4.82455 4.85752 4.95963 4.99055 5.14678 5.45514 5.53136 5.66363 5.69468 5.87030 6.06257 6.19878 6.35252 6.43068 6.56304 6.58778 6.88597 7.14510 7.38372 7.51274 7.60749 8.31547 8.80305 9.38798 10.94772 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.017232 B = 0.003872 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.521306 B = 7229.151790 C = 8173.442171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.182 4.182 3 C 0.117 3.883 4 N -0.519 5.519 5 C 0.209 3.791 6 C -0.527 4.527 7 H 0.075 0.925 8 C 0.082 3.918 9 N -0.890 5.890 10 Si 0.873 3.127 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.267 1.267 14 C 0.552 3.448 15 S -0.619 6.619 16 N -0.647 5.647 17 C 0.105 3.895 18 C -0.020 4.020 19 C -0.145 4.145 20 C 0.166 3.834 21 Cl -0.040 7.040 22 N -0.470 5.470 23 C 0.105 3.895 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.267 0.733 32 H 0.405 0.595 33 H 0.165 0.835 34 H 0.147 0.853 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.583 -15.361 -11.388 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.202 4.202 3 C -0.009 4.009 4 N -0.221 5.221 5 C 0.089 3.911 6 C -0.566 4.566 7 H 0.093 0.907 8 C -0.122 4.122 9 N -0.528 5.528 10 Si 0.700 3.300 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.192 1.192 14 C 0.195 3.805 15 S -0.483 6.483 16 N -0.278 5.278 17 C 0.008 3.992 18 C -0.052 4.052 19 C -0.168 4.168 20 C 0.001 3.999 21 Cl -0.011 7.011 22 N -0.182 5.182 23 C -0.055 4.055 24 H 0.120 0.880 25 H 0.122 0.878 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.245 0.755 33 H 0.183 0.817 34 H 0.165 0.835 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.727 -14.915 -11.052 18.643 hybrid contribution -1.568 -0.233 0.434 1.644 sum 0.159 -15.147 -10.618 18.499 Atomic orbital electron populations 1.23953 0.95639 1.02462 0.97884 1.23231 0.96633 0.98050 1.02282 1.20993 0.93539 0.97359 0.89026 1.47560 1.06689 1.53375 1.14479 1.20381 0.95511 0.96564 0.78621 1.20961 1.42258 0.89723 1.03624 0.90727 1.24713 0.95001 0.94633 0.97819 1.69868 1.46999 1.06611 1.29318 0.86898 0.79881 0.79547 0.83675 1.19341 1.21053 1.19196 1.22325 0.87742 0.81128 0.89316 1.93234 1.46826 1.76921 1.31354 1.42181 1.16304 1.59090 1.10195 1.18453 0.86755 0.96030 0.97994 1.21935 0.95645 0.89849 0.97733 1.21662 0.95053 1.02724 0.97392 1.21592 0.89157 0.96774 0.92370 1.98389 1.23848 1.81554 1.97325 1.66941 1.12605 1.08881 1.29731 1.22362 0.87890 0.97810 0.97445 0.88050 0.87791 0.87278 0.87301 0.90419 0.94364 0.91155 0.92330 0.75491 0.81749 0.83485 0.81993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 14.32 29.01 0.42 -1.11 16 2 C -0.18 -1.92 9.85 -36.03 -0.35 -2.28 16 3 C 0.12 1.47 5.66 -5.19 -0.03 1.44 16 4 N -0.52 -9.11 2.44 -178.46 -0.44 -9.55 16 5 C 0.21 4.58 3.99 -5.19 -0.02 4.56 16 6 C -0.53 -14.03 9.94 -34.44 -0.34 -14.37 16 7 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 8 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 9 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 10 Si 0.87 20.64 27.47 -169.99 -4.67 15.97 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 14 C 0.55 9.73 7.49 -86.92 -0.65 9.08 16 15 S -0.62 -13.67 24.44 -107.50 -2.63 -16.29 16 16 N -0.65 -8.46 5.22 -11.30 -0.06 -8.52 16 17 C 0.11 1.39 5.94 -83.53 -0.50 0.90 16 18 C -0.02 -0.28 7.98 -39.10 -0.31 -0.59 16 19 C -0.14 -1.78 9.87 -39.43 -0.39 -2.17 16 20 C 0.17 2.16 7.27 -17.43 -0.13 2.04 16 21 Cl -0.04 -0.46 29.10 -51.86 -1.51 -1.96 16 22 N -0.47 -6.42 10.33 -10.20 -0.11 -6.53 16 23 C 0.11 1.29 11.12 -17.33 -0.19 1.10 16 24 H 0.10 0.80 8.06 -52.48 -0.42 0.38 16 25 H 0.10 0.96 7.84 -52.49 -0.41 0.55 16 26 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 27 H 0.11 1.45 7.72 -51.93 -0.40 1.05 16 28 H 0.08 0.77 6.29 -51.93 -0.33 0.44 16 29 H 0.04 0.80 7.13 -51.93 -0.37 0.43 16 30 H 0.07 1.68 6.00 -51.93 -0.31 1.37 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.40 3.92 6.52 -40.82 -0.27 3.66 16 33 H 0.17 2.42 6.30 -50.11 -0.32 2.10 16 34 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -33.04 329.02 -9.95 -42.99 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -3.68 Total: 3.89 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -2.60 Total: 0.78 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 0.17 Total: -50.32 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Atomic # 16 Polarization: -13.67 SS G_CDS: -2.63 Total: -16.29 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.51 Total: -1.96 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.04 -9.95 -42.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793247777.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.885 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds