Wall clock time and date at job start Tue Mar 31 2020 09:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99971 * 2 1 4 4 H 1.48500 * 109.47206 * 270.00054 * 3 2 1 5 5 H 1.48501 * 109.47140 * 30.00354 * 3 2 1 6 6 H 1.48506 * 109.46922 * 150.00192 * 3 2 1 7 7 C 1.37874 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00638 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00221 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47729 * 180.02562 * 9 7 2 11 11 C 1.42894 * 114.00418 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47466 * 180.02562 * 11 10 9 13 13 O 1.42893 * 109.47197 * 64.99653 * 12 11 10 14 14 C 1.34911 * 116.99823 * 180.02562 * 13 12 11 15 15 O 1.21619 * 120.00212 * 359.97438 * 14 13 12 16 16 C 1.46189 * 119.99803 * 180.02562 * 14 13 12 17 17 C 1.34961 * 120.00174 * 179.97438 * 16 14 13 18 18 C 1.47120 * 120.00105 * 179.97438 * 17 16 14 19 19 C 1.40345 * 120.57022 * 180.02562 * 18 17 16 20 20 C 1.38189 * 118.28212 * 179.97438 * 19 18 17 21 21 C 1.38595 * 119.32776 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 119.44442 * 179.97438 * 21 20 19 23 23 N 1.32051 * 121.10583 * 0.27627 * 21 20 19 24 24 C 1.31654 * 121.88895 * 359.43021 * 23 21 20 25 25 H 0.96998 * 119.99891 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46992 * 59.99830 * 9 7 2 27 27 H 1.09004 * 109.47033 * 300.00376 * 9 7 2 28 28 H 1.09001 * 109.47455 * 59.99377 * 11 10 9 29 29 H 1.09008 * 109.47152 * 299.99844 * 11 10 9 30 30 H 1.08998 * 109.46318 * 304.99559 * 12 11 10 31 31 H 1.08992 * 109.46967 * 184.99876 * 12 11 10 32 32 H 1.08000 * 120.00265 * 359.97438 * 16 14 13 33 33 H 1.08000 * 119.99560 * 0.02562 * 17 16 14 34 34 H 1.07999 * 120.86003 * 0.02562 * 19 18 17 35 35 H 1.08002 * 120.33665 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.73434 * 180.26586 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6481 -5.9563 -0.0004 13 8 3.3865 -5.8898 1.2211 14 6 4.3862 -6.7815 1.3817 15 8 4.6232 -7.5933 0.5077 16 6 5.1838 -6.7725 2.6068 17 6 6.1835 -7.6648 2.7677 18 6 6.9865 -7.6554 4.0004 19 6 8.0292 -8.5775 4.1800 20 6 8.7534 -8.5260 5.3558 21 6 8.4302 -7.5754 6.3112 22 17 9.3375 -7.5085 7.7896 23 7 7.4397 -6.7236 6.1181 24 6 6.7238 -6.7282 5.0133 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 0.9452 -4.9822 -0.8913 29 1 0.9446 -4.9827 0.8887 30 1 3.3221 -5.7956 -0.8418 31 1 2.1821 -6.9374 -0.0904 32 1 4.9731 -6.0519 3.3831 33 1 6.3945 -8.3851 1.9912 34 1 8.2602 -9.3078 3.4187 35 1 9.5626 -9.2200 5.5289 36 1 5.9242 -6.0127 4.8901 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815221581.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:39 Heat of formation + Delta-G solvation = -90.786326 kcal Electronic energy + Delta-G solvation = -21175.851049 eV Core-core repulsion = 17458.663030 eV Total energy + Delta-G solvation = -3717.188019 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.83236 -40.34003 -37.34566 -37.12429 -36.19508 -34.90447 -33.04399 -32.77689 -30.71755 -29.81674 -26.99562 -25.57034 -24.39585 -23.00674 -22.36365 -21.70219 -19.99686 -18.43381 -17.85224 -17.21104 -16.59364 -16.49777 -15.98622 -15.79892 -15.32685 -15.02515 -14.79999 -14.62095 -14.34877 -13.92153 -13.76460 -13.07531 -12.92630 -12.62035 -12.44973 -12.39746 -11.93167 -11.78318 -11.45877 -11.10184 -10.96530 -10.86407 -10.80083 -10.55711 -10.38178 -10.30411 -10.14155 -10.05651 -9.14042 -8.92574 -8.88932 -8.22574 -6.12738 -4.14455 -0.28834 0.57022 1.26103 1.29885 2.70604 2.77469 3.20162 3.30006 3.35056 3.40601 3.84384 4.08416 4.19334 4.25658 4.31727 4.44010 4.68053 4.70272 4.89032 5.06135 5.19640 5.22330 5.23933 5.30537 5.43796 5.69975 5.74295 5.84833 5.92538 5.95731 6.07077 6.51498 7.04083 7.13517 7.38572 7.75153 7.77701 8.11469 8.50995 8.98016 9.50386 10.98785 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.002201 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.438249 B =12716.752059 C =14411.880355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.073 3.927 13 O -0.329 6.329 14 C 0.494 3.506 15 O -0.516 6.516 16 C -0.165 4.165 17 C -0.022 4.022 18 C -0.120 4.120 19 C -0.039 4.039 20 C -0.156 4.156 21 C 0.180 3.820 22 Cl -0.027 7.027 23 N -0.475 5.475 24 C 0.141 3.859 25 H 0.264 0.736 26 H 0.006 0.994 27 H 0.008 0.992 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.733 -20.860 10.635 28.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C -0.001 4.001 13 O -0.244 6.244 14 C 0.340 3.660 15 O -0.408 6.408 16 C -0.184 4.184 17 C -0.041 4.041 18 C -0.122 4.122 19 C -0.065 4.065 20 C -0.176 4.176 21 C 0.017 3.983 22 Cl 0.001 6.999 23 N -0.185 5.185 24 C -0.017 4.017 25 H 0.074 0.926 26 H 0.024 0.976 27 H 0.025 0.975 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.171 0.829 35 H 0.168 0.832 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 15.704 -20.299 11.162 27.987 hybrid contribution 0.202 0.282 -0.636 0.724 sum 15.907 -20.017 10.526 27.650 Atomic orbital electron populations 1.69957 1.06103 1.27213 1.50504 1.24951 0.94997 0.99467 0.95108 0.86326 0.79696 0.82179 0.78235 1.20469 1.21051 1.19573 1.21042 0.94093 0.89279 1.50888 0.91512 1.20244 0.88744 0.83481 0.95531 1.87913 1.35343 1.12608 1.95229 1.22328 0.93201 0.85438 1.00626 1.22866 0.93827 0.98848 0.84587 1.86290 1.43111 1.53580 1.41422 1.21124 0.79273 0.78382 0.87173 1.90860 1.68209 1.38185 1.43543 1.22348 0.97040 1.02108 0.96879 1.22192 0.91301 0.96277 0.94302 1.20039 0.97952 0.98252 0.95982 1.21839 0.91899 0.96342 0.96399 1.21810 1.02394 0.99809 0.93614 1.21905 0.93175 0.93609 0.89656 1.98427 1.70794 1.97634 1.33022 1.67031 1.05276 1.23011 1.23184 1.23216 0.96300 0.95671 0.86483 0.92621 0.97595 0.97459 0.91920 0.93155 0.90616 0.90588 0.83627 0.83779 0.82944 0.83173 0.80740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -15.14 9.43 -34.44 -0.32 -15.47 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.19 5.28 5.69 36.01 0.20 5.49 16 10 O -0.39 -9.40 10.29 -40.08 -0.41 -9.81 16 11 C 0.06 1.11 6.32 37.16 0.23 1.35 16 12 C 0.07 1.13 5.76 37.16 0.21 1.34 16 13 O -0.33 -5.29 10.09 -44.19 -0.45 -5.73 16 14 C 0.49 6.84 7.87 33.92 0.27 7.11 16 15 O -0.52 -7.98 16.00 -19.35 -0.31 -8.29 16 16 C -0.17 -1.64 9.54 -37.56 -0.36 -2.00 16 17 C -0.02 -0.17 9.48 -37.14 -0.35 -0.52 16 18 C -0.12 -0.88 5.88 -104.91 -0.62 -1.50 16 19 C -0.04 -0.22 9.94 -38.81 -0.39 -0.61 16 20 C -0.16 -0.95 9.86 -39.47 -0.39 -1.34 16 21 C 0.18 1.55 7.27 -17.33 -0.13 1.43 16 22 Cl -0.03 -0.22 29.10 -51.86 -1.51 -1.73 16 23 N -0.48 -4.81 10.32 -9.93 -0.10 -4.91 16 24 C 0.14 1.20 10.59 -17.04 -0.18 1.02 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.08 1.20 8.13 -51.93 -0.42 0.78 16 31 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 32 H 0.15 1.20 6.10 -52.49 -0.32 0.88 16 33 H 0.14 1.06 7.52 -52.49 -0.39 0.67 16 34 H 0.15 0.43 8.06 -52.49 -0.42 0.00 16 35 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 36 H 0.18 1.21 6.19 -52.48 -0.32 0.88 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -34.38 343.91 -7.76 -42.13 By element: Atomic # 1 Polarization: -1.47 SS G_CDS: -3.96 Total: -5.44 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.91 Total: -2.19 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: 0.63 Total: -30.92 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -1.17 Total: -23.83 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.51 Total: -1.73 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.38 -7.76 -42.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815221581.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.652 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds