Wall clock time and date at job start Tue Mar 31 2020 09:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00371 * 2 1 4 4 H 1.48504 * 109.47051 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47402 * 300.00190 * 3 2 1 6 6 H 1.48503 * 109.47018 * 60.00346 * 3 2 1 7 7 C 1.37881 * 119.99536 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00099 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47059 * 180.02562 * 9 7 2 11 11 C 1.42900 * 114.00223 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47615 * 179.97438 * 11 10 9 13 13 O 1.42899 * 109.47049 * 64.99765 * 12 11 10 14 14 C 1.34916 * 117.00105 * 180.02562 * 13 12 11 15 15 O 1.21628 * 120.00040 * 359.97438 * 14 13 12 16 16 C 1.46195 * 119.99943 * 180.02562 * 14 13 12 17 17 C 1.34952 * 119.99639 * 173.28243 * 16 14 13 18 18 C 1.47123 * 120.00226 * 348.75706 * 17 16 14 19 19 C 1.40341 * 120.57379 * 132.10815 * 18 17 16 20 20 C 1.38191 * 118.28521 * 179.77671 * 19 18 17 21 21 C 1.38594 * 119.32265 * 0.50626 * 20 19 18 22 22 Cl 1.73603 * 119.44642 * 179.75415 * 21 20 19 23 23 N 1.32053 * 121.11045 * 359.47319 * 21 20 19 24 24 C 1.31661 * 121.88836 * 0.25924 * 23 21 20 25 25 H 0.97001 * 119.99607 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47409 * 59.99721 * 9 7 2 27 27 H 1.09008 * 109.46843 * 299.99824 * 9 7 2 28 28 H 1.08997 * 109.47261 * 59.99620 * 11 10 9 29 29 H 1.09008 * 109.46961 * 300.00119 * 11 10 9 30 30 H 1.08994 * 109.47359 * 305.00240 * 12 11 10 31 31 H 1.09000 * 109.47243 * 184.99937 * 12 11 10 32 32 H 1.08001 * 119.99840 * 353.27151 * 16 14 13 33 33 H 1.08002 * 120.00048 * 168.76218 * 17 16 14 34 34 H 1.08001 * 120.86028 * 0.03853 * 19 18 17 35 35 H 1.07997 * 120.34122 * 180.24175 * 20 19 18 36 36 H 1.07999 * 119.73168 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 2.1794 -3.5854 -0.0005 11 6 1.5648 -4.8755 0.0000 12 6 2.6476 -5.9563 -0.0006 13 8 3.3879 -5.8897 1.2198 14 6 4.3878 -6.7814 1.3792 15 8 4.6235 -7.5934 0.5049 16 6 5.1872 -6.7722 2.6032 17 6 6.0955 -7.7457 2.8231 18 6 6.1137 -8.9420 1.9668 19 6 7.3182 -9.4093 1.4188 20 6 7.2814 -10.5399 0.6250 21 6 6.0667 -11.1641 0.3889 22 17 6.0158 -12.5809 -0.6131 23 7 4.9482 -10.7025 0.9176 24 6 4.9312 -9.6325 1.6847 25 1 -0.4849 0.8401 0.0004 26 1 0.6238 -2.5567 -0.8902 27 1 0.6245 -2.5571 0.8898 28 1 0.9443 -4.9828 -0.8896 29 1 0.9449 -4.9822 0.8903 30 1 3.3206 -5.7959 -0.8429 31 1 2.1815 -6.9376 -0.0898 32 1 5.0509 -5.9862 3.3313 33 1 6.8091 -7.6468 3.6277 34 1 8.2506 -8.9010 1.6158 35 1 8.1892 -10.9306 0.1897 36 1 3.9962 -9.2851 2.0987 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815221582.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:41 Heat of formation + Delta-G solvation = -80.962686 kcal Electronic energy + Delta-G solvation = -21929.168789 eV Core-core repulsion = 18212.406755 eV Total energy + Delta-G solvation = -3716.762034 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.92450 -40.02547 -37.38299 -36.88968 -36.20714 -34.58468 -32.79254 -32.66857 -30.65766 -29.77237 -26.99734 -25.30612 -24.03785 -23.14698 -22.38905 -21.76473 -19.96777 -18.19530 -17.68966 -17.01014 -16.73198 -16.48440 -16.30530 -15.32675 -15.10414 -14.92745 -14.56526 -14.39857 -14.22423 -13.96704 -13.65137 -13.36342 -12.98019 -12.64622 -12.41955 -11.96290 -11.92017 -11.60892 -11.45881 -10.94544 -10.90046 -10.77854 -10.60800 -10.52836 -10.39024 -10.09350 -10.06087 -9.79145 -9.13345 -8.90236 -8.71061 -8.23347 -6.13844 -4.15460 0.08402 0.89392 1.12829 1.53430 2.74040 2.85292 3.27462 3.33925 3.35755 3.40400 4.07271 4.22848 4.30777 4.42889 4.52843 4.67187 4.73528 4.80263 5.04281 5.21008 5.22832 5.27544 5.39833 5.44767 5.51125 5.73340 5.79446 5.85627 5.95341 6.07382 6.14020 6.53527 7.03797 7.37994 7.42835 7.75828 7.77977 8.10663 8.50420 8.97404 9.49348 10.97776 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.027480 B = 0.002225 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.665924 B =12579.424496 C =13042.085264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.074 3.926 13 O -0.329 6.329 14 C 0.484 3.516 15 O -0.508 6.508 16 C -0.165 4.165 17 C -0.024 4.024 18 C -0.116 4.116 19 C -0.046 4.046 20 C -0.160 4.160 21 C 0.179 3.821 22 Cl -0.037 7.037 23 N -0.480 5.480 24 C 0.183 3.817 25 H 0.264 0.736 26 H 0.006 0.994 27 H 0.007 0.993 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.179 -22.277 6.034 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.000 4.000 13 O -0.244 6.244 14 C 0.330 3.670 15 O -0.399 6.399 16 C -0.184 4.184 17 C -0.043 4.043 18 C -0.118 4.118 19 C -0.072 4.072 20 C -0.181 4.181 21 C 0.017 3.983 22 Cl -0.008 7.008 23 N -0.191 5.191 24 C 0.024 3.976 25 H 0.073 0.927 26 H 0.024 0.976 27 H 0.025 0.975 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.173 0.827 33 H 0.171 0.829 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 13.468 -22.914 5.461 27.134 hybrid contribution 0.626 1.241 -0.184 1.402 sum 14.095 -21.673 5.276 26.386 Atomic orbital electron populations 1.69971 1.06104 1.27105 1.50579 1.24960 0.95002 0.99487 0.95133 0.86269 0.80009 0.82509 0.77641 1.19476 1.20833 1.20796 1.21082 0.94114 0.89273 1.50755 0.91476 1.20246 0.88755 0.83500 0.95526 1.87912 1.35341 1.12618 1.95230 1.22323 0.93214 0.85420 1.00594 1.22840 0.93742 0.98798 0.84660 1.86299 1.42866 1.53898 1.41359 1.21453 0.79146 0.78369 0.87995 1.90926 1.67672 1.37504 1.43778 1.22533 0.97106 1.02331 0.96438 1.22337 0.95071 0.90318 0.96594 1.20032 0.94752 0.96935 1.00053 1.21612 0.97859 0.93847 0.93834 1.21659 0.97806 0.97175 1.01474 1.21721 0.90408 0.91220 0.94977 1.98404 1.98658 1.37311 1.66449 1.66901 1.28931 1.13834 1.09397 1.22657 0.96732 0.87851 0.90338 0.92670 0.97600 0.97474 0.91985 0.93166 0.90754 0.90625 0.82724 0.82910 0.83581 0.83701 0.82695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.73 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -15.12 9.43 -34.44 -0.32 -15.45 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 5.29 5.69 36.01 0.20 5.50 16 10 O -0.39 -9.46 10.29 -40.08 -0.41 -9.87 16 11 C 0.06 1.14 6.32 37.15 0.23 1.37 16 12 C 0.07 1.17 5.76 37.15 0.21 1.38 16 13 O -0.33 -5.26 10.09 -44.20 -0.45 -5.71 16 14 C 0.48 6.55 7.09 33.93 0.24 6.80 16 15 O -0.51 -7.71 12.23 -19.36 -0.24 -7.94 16 16 C -0.17 -1.53 10.06 -37.56 -0.38 -1.90 16 17 C -0.02 -0.17 9.81 -37.14 -0.36 -0.54 16 18 C -0.12 -1.08 4.36 -104.91 -0.46 -1.53 16 19 C -0.05 -0.37 9.94 -38.81 -0.39 -0.75 16 20 C -0.16 -1.40 9.86 -39.47 -0.39 -1.79 16 21 C 0.18 2.01 7.27 -17.33 -0.13 1.89 16 22 Cl -0.04 -0.37 29.10 -51.86 -1.51 -1.88 16 23 N -0.48 -6.15 10.32 -9.93 -0.10 -6.26 16 24 C 0.18 2.08 7.96 -17.04 -0.14 1.94 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 26 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.01 0.21 8.14 -51.92 -0.42 -0.21 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.88 8.14 -51.92 -0.42 0.45 16 30 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 31 H 0.08 1.02 8.13 -51.93 -0.42 0.59 16 32 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 34 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.16 1.63 7.44 -52.49 -0.39 1.24 16 LS Contribution 339.81 15.07 5.12 5.12 Total: -1.00 -34.69 339.81 -7.80 -42.49 By element: Atomic # 1 Polarization: -0.89 SS G_CDS: -4.16 Total: -5.06 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -1.76 Total: -1.59 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.63 Total: -32.26 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -1.10 Total: -23.52 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.51 Total: -1.88 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.69 -7.80 -42.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815221582.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.477 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds