Wall clock time and date at job start Tue Mar 31 2020 09:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21416 * 119.99637 * 2 1 4 4 C 1.41454 * 120.00123 * 179.97438 * 2 1 3 5 5 C 1.36367 * 125.12044 * 180.28844 * 4 2 1 6 6 C 1.38757 * 113.38321 * 180.23301 * 5 4 2 7 7 C 1.47221 * 122.90941 * 179.77885 * 6 5 4 8 8 O 1.21541 * 120.00255 * 359.74528 * 7 6 5 9 9 O 1.34773 * 120.00354 * 179.73922 * 7 6 5 10 10 C 1.45198 * 117.00235 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47036 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46835 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00280 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99788 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46828 * 90.00241 * 19 17 15 21 21 H 1.48495 * 109.46968 * 209.99597 * 19 17 15 22 22 H 1.48499 * 109.47437 * 330.00066 * 19 17 15 23 23 C 1.36852 * 114.18283 * 359.52017 * 6 5 4 24 24 S 1.70553 * 110.74872 * 0.26453 * 23 6 5 25 25 H 1.08995 * 109.47595 * 270.00082 * 1 2 3 26 26 H 1.08999 * 109.47506 * 30.00677 * 1 2 3 27 27 H 1.09005 * 109.46612 * 150.00502 * 1 2 3 28 28 H 1.08003 * 123.30959 * 0.04892 * 5 4 2 29 29 H 1.09002 * 109.47379 * 59.99758 * 10 9 7 30 30 H 1.09001 * 109.46782 * 299.99842 * 10 9 7 31 31 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 32 32 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 33 33 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 34 34 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 35 35 H 1.07998 * 124.62495 * 180.28259 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1140 1.0515 0.0000 4 6 2.2143 -1.2250 0.0005 5 6 3.5725 -1.3467 0.0062 6 6 4.0074 -2.6643 0.0002 7 6 5.4318 -3.0365 -0.0001 8 8 6.2859 -2.1718 0.0004 9 8 5.7888 -4.3361 -0.0008 10 6 7.2109 -4.6292 -0.0005 11 6 7.4161 -6.1221 -0.0007 12 8 6.4581 -6.8659 -0.0016 13 7 8.6643 -6.6308 -0.0010 14 6 8.8637 -8.0821 -0.0018 15 6 10.3397 -8.3862 -0.0014 16 1 11.0574 -7.5792 -0.0002 17 6 10.7739 -9.6949 -0.0025 18 7 9.9000 -10.6777 -0.0045 19 14 12.6035 -10.0719 -0.0027 20 1 13.0881 -10.1731 1.3974 21 1 12.8436 -11.3587 -0.7038 22 1 13.3331 -8.9836 -0.7017 23 6 2.9976 -3.5880 0.0002 24 16 1.4753 -2.8189 0.0005 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8901 -0.5138 28 1 4.2438 -0.5006 0.0117 29 1 7.6702 -4.1998 0.8899 30 1 7.6707 -4.1987 -0.8901 31 1 9.4304 -6.0359 -0.0007 32 1 8.4041 -8.5125 0.8879 33 1 8.4042 -8.5115 -0.8921 34 1 10.2055 -11.5983 -0.0050 35 1 3.1446 -4.6579 0.0004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815276647.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:32 Heat of formation + Delta-G solvation = -128.532383 kcal Electronic energy + Delta-G solvation = -21527.090472 eV Core-core repulsion = 17810.309367 eV Total energy + Delta-G solvation = -3716.781105 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79365 -39.94477 -38.83544 -37.50639 -36.28612 -34.30133 -32.45576 -31.98083 -29.97362 -29.03375 -26.85873 -25.93116 -23.80586 -22.50641 -20.60542 -20.00220 -19.70681 -18.10163 -17.91730 -17.34313 -16.71665 -16.43600 -15.84957 -15.61075 -15.37625 -15.23850 -15.12305 -14.73049 -14.33264 -13.54376 -13.50290 -13.38061 -13.05727 -12.89655 -12.84829 -12.55900 -12.53897 -12.03613 -11.82291 -11.74398 -11.04739 -10.95175 -10.77828 -10.76952 -10.37770 -10.37468 -9.48088 -9.47813 -9.24987 -9.23117 -8.81924 -8.04102 -6.22933 -4.30454 -0.29930 0.83900 0.94940 1.20350 2.18539 2.29366 2.80050 3.11394 3.21105 3.27514 3.29811 3.68271 3.95154 4.30128 4.43960 4.60032 4.64637 4.73937 4.84353 4.88819 5.08232 5.13211 5.18051 5.22174 5.28061 5.38074 5.60667 5.67110 6.18193 7.03386 7.17494 7.24980 7.41172 7.51550 7.59263 7.88112 8.44651 8.66488 8.90768 9.36070 10.87146 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.045317 B = 0.002073 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.726931 B =13502.558596 C =14094.535537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.424 3.576 3 O -0.454 6.454 4 C -0.328 4.328 5 C 0.009 3.991 6 C -0.160 4.160 7 C 0.526 3.474 8 O -0.503 6.503 9 O -0.324 6.324 10 C 0.050 3.950 11 C 0.501 3.499 12 O -0.536 6.536 13 N -0.705 5.705 14 C 0.251 3.749 15 C -0.546 4.546 16 H 0.065 0.935 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.906 3.094 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.158 4.158 24 S 0.284 5.716 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.166 0.834 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.394 0.606 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.267 0.733 35 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.109 18.116 0.086 26.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.302 3.698 3 O -0.332 6.332 4 C -0.445 4.445 5 C -0.022 4.022 6 C -0.174 4.174 7 C 0.369 3.631 8 O -0.392 6.392 9 O -0.239 6.239 10 C -0.028 4.028 11 C 0.283 3.717 12 O -0.413 6.413 13 N -0.356 5.356 14 C 0.131 3.869 15 C -0.584 4.584 16 H 0.083 0.917 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.733 3.267 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.297 4.297 24 S 0.552 5.448 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.101 0.899 28 H 0.184 0.816 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.227 0.773 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -20.735 17.581 0.078 27.185 hybrid contribution 3.111 0.249 0.015 3.121 sum -17.624 17.830 0.092 25.070 Atomic orbital electron populations 1.22271 0.93391 1.05046 1.05154 1.20134 0.91535 0.86271 0.71849 1.90637 1.71979 1.33496 1.37054 1.24008 0.98012 1.00192 1.22284 1.20822 0.94100 0.96593 0.90695 1.18234 0.91148 0.93157 1.14870 1.20409 0.88688 0.81016 0.73017 1.90876 1.51853 1.50525 1.45976 1.86583 1.27568 1.26162 1.83616 1.22917 0.78755 0.96220 1.04870 1.19855 0.84725 0.88316 0.78756 1.90697 1.40425 1.60463 1.49764 1.46369 1.05518 1.11397 1.72268 1.19184 0.96876 0.72793 0.98035 1.21208 0.90960 0.92682 1.53582 0.91731 1.24954 0.98553 0.95910 0.94572 1.69966 1.33983 0.99588 1.48641 0.86382 0.84138 0.77937 0.78268 1.20415 1.20963 1.19703 1.26724 0.97725 1.06422 0.98861 1.82998 1.04530 0.93906 1.63332 0.88061 0.88748 0.89931 0.81644 0.88271 0.88261 0.77348 0.95239 0.95222 0.92351 0.78867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.87 9.94 36.01 0.36 -0.52 16 2 C 0.42 3.57 7.05 -33.08 -0.23 3.34 16 3 O -0.45 -5.54 17.44 5.44 0.09 -5.44 16 4 C -0.33 -2.76 6.19 -39.03 -0.24 -3.00 16 5 C 0.01 0.09 9.47 -40.06 -0.38 -0.29 16 6 C -0.16 -1.77 5.81 -106.56 -0.62 -2.39 16 7 C 0.53 7.31 7.92 34.38 0.27 7.59 16 8 O -0.50 -7.87 16.48 -19.30 -0.32 -8.19 16 9 O -0.32 -4.94 9.37 -47.37 -0.44 -5.38 16 10 C 0.05 0.74 5.95 36.01 0.21 0.95 16 11 C 0.50 9.71 7.91 -10.98 -0.09 9.62 16 12 O -0.54 -12.58 16.50 -14.11 -0.23 -12.82 16 13 N -0.71 -14.24 5.55 -61.47 -0.34 -14.58 16 14 C 0.25 6.45 5.43 -5.19 -0.03 6.42 16 15 C -0.55 -14.45 9.28 -34.44 -0.32 -14.77 16 16 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.88 -25.53 13.29 55.43 0.74 -24.79 16 19 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 C -0.16 -1.36 10.57 30.23 0.32 -1.04 16 24 S 0.28 1.64 21.79 -107.50 -2.34 -0.70 16 25 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.22 7.24 -51.93 -0.38 -0.16 16 28 H 0.17 1.84 7.92 -52.48 -0.42 1.42 16 29 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.39 6.67 8.32 -40.82 -0.34 6.33 16 32 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.19 1.58 8.00 -52.49 -0.42 1.16 16 LS Contribution 338.48 15.07 5.10 5.10 Total: -1.00 -34.78 338.48 -7.23 -42.01 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -3.62 Total: 1.77 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -0.84 Total: 7.56 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.40 Total: -39.37 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.90 Total: -31.83 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.34 Total: -0.70 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.78 -7.23 -42.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815276647.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.523 kcal (2) G-P(sol) polarization free energy of solvation -34.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds