Wall clock time and date at job start Tue Mar 31 2020 09:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99696 * 2 1 4 4 H 1.48497 * 109.46961 * 269.99577 * 3 2 1 5 5 H 1.48503 * 109.47348 * 29.99952 * 3 2 1 6 6 H 1.48501 * 109.46737 * 150.00137 * 3 2 1 7 7 C 1.37875 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00314 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00020 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.64033 * 300.70095 * 9 7 2 11 11 C 1.55162 * 110.72075 * 177.56128 * 9 7 2 12 12 C 1.54907 * 101.58039 * 205.95482 * 11 9 7 13 13 N 1.47422 * 104.83115 * 37.01385 * 12 11 9 14 14 C 1.34783 * 125.65155 * 155.91433 * 13 12 11 15 15 O 1.21587 * 119.99939 * 179.97438 * 14 13 12 16 16 C 1.47458 * 119.99485 * 359.96641 * 14 13 12 17 17 C 1.40203 * 120.20261 * 270.00118 * 16 14 13 18 18 O 1.35654 * 120.14422 * 0.02562 * 17 16 14 19 19 C 1.38635 * 119.71035 * 179.97438 * 17 16 14 20 20 C 1.38133 * 120.12341 * 0.02562 * 19 17 16 21 21 C 1.38439 * 120.41585 * 359.97438 * 20 19 17 22 22 C 1.38012 * 120.27861 * 359.74383 * 21 20 19 23 23 Cl 1.73604 * 120.05869 * 180.27796 * 22 21 20 24 24 C 1.47488 * 108.75833 * 335.88551 * 13 12 11 25 25 H 0.97001 * 120.00180 * 0.02562 * 1 2 3 26 26 H 0.96696 * 114.00036 * 59.30029 * 10 9 7 27 27 H 1.09001 * 111.00121 * 324.03234 * 11 9 7 28 28 H 1.09000 * 111.00389 * 87.88235 * 11 9 7 29 29 H 1.09000 * 110.36177 * 155.84517 * 12 11 9 30 30 H 1.08992 * 110.36943 * 278.06095 * 12 11 9 31 31 H 0.96696 * 113.99703 * 89.99974 * 18 17 16 32 32 H 1.08002 * 119.93341 * 179.97438 * 19 17 16 33 33 H 1.08008 * 119.79320 * 180.02562 * 20 19 17 34 34 H 1.07992 * 119.85730 * 180.02562 * 21 20 19 35 35 H 1.09001 * 110.03275 * 241.66769 * 24 13 12 36 36 H 1.09000 * 109.96057 * 120.35609 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 8 0.4083 -2.5933 1.1520 11 6 2.2322 -3.6996 -0.0596 12 6 1.3483 -4.7906 -0.7140 13 7 0.5272 -4.0682 -1.7026 14 6 -0.0390 -4.6096 -2.7993 15 8 -0.6992 -3.9155 -3.5482 16 6 0.1425 -6.0436 -3.0911 17 6 1.2253 -6.4730 -3.8714 18 8 2.1120 -5.5710 -4.3615 19 6 1.3864 -7.8237 -4.1389 20 6 0.4836 -8.7420 -3.6392 21 6 -0.5875 -8.3236 -2.8682 22 6 -0.7608 -6.9837 -2.5866 23 17 -2.1018 -6.4661 -1.6131 24 6 0.4266 -2.6548 -1.2934 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2486 -1.8867 1.2171 27 1 3.0943 -3.4679 -0.6852 28 1 2.5462 -3.9990 0.9403 29 1 1.9704 -5.5358 -1.2096 30 1 0.7139 -5.2644 0.0350 31 1 2.8602 -5.3960 -3.7744 32 1 2.2190 -8.1585 -4.7399 33 1 0.6144 -9.7931 -3.8506 34 1 -1.2877 -9.0493 -2.4817 35 1 -0.6147 -2.3943 -1.1036 36 1 0.8355 -2.0118 -2.0728 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844015169.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:18 Heat of formation + Delta-G solvation = -101.697869 kcal Electronic energy + Delta-G solvation = -24055.388366 eV Core-core repulsion = 20337.727187 eV Total energy + Delta-G solvation = -3717.661179 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.42157 -38.77807 -37.26345 -37.05977 -36.17773 -34.30041 -32.21773 -31.43363 -30.14321 -29.79333 -27.87480 -25.47667 -23.76263 -22.82710 -22.33221 -19.77705 -19.38886 -18.50472 -17.25096 -16.99641 -16.44161 -16.19577 -15.49645 -15.19919 -14.73611 -14.54965 -14.45054 -14.12928 -13.33359 -13.07581 -12.99641 -12.91560 -12.83154 -12.24285 -11.94062 -11.69981 -11.49204 -11.45508 -11.09735 -11.07154 -10.90766 -10.82300 -10.70834 -10.52281 -10.20387 -9.57578 -9.36143 -9.01027 -8.86874 -8.69793 -8.33571 -7.95027 -6.30840 -4.39847 0.78085 0.85830 1.98619 2.97543 3.16354 3.20294 3.27956 3.30025 3.53322 3.94183 4.25162 4.55947 4.70532 4.87829 4.96568 5.00808 5.27652 5.31187 5.39554 5.61764 5.75201 5.83608 5.94102 5.99855 6.01526 6.12703 6.31668 6.45186 6.69387 6.81240 6.90805 7.22898 7.33453 7.44339 7.70872 7.96770 8.12140 8.59168 8.65250 9.28226 9.37862 10.76970 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.021474 B = 0.004452 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.585219 B = 6287.436501 C = 6746.017304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.250 3.750 10 O -0.585 6.585 11 C -0.117 4.117 12 C 0.103 3.897 13 N -0.600 5.600 14 C 0.572 3.428 15 O -0.530 6.530 16 C -0.129 4.129 17 C 0.150 3.850 18 O -0.484 6.484 19 C -0.144 4.144 20 C -0.083 4.083 21 C -0.123 4.123 22 C 0.006 3.994 23 Cl -0.046 7.046 24 C 0.105 3.895 25 H 0.271 0.729 26 H 0.384 0.616 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.397 0.603 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.067 0.933 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 -17.112 -3.820 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.209 3.791 10 O -0.394 6.394 11 C -0.155 4.155 12 C -0.020 4.020 13 N -0.333 5.333 14 C 0.358 3.642 15 O -0.408 6.408 16 C -0.134 4.134 17 C 0.104 3.896 18 O -0.295 6.295 19 C -0.163 4.163 20 C -0.102 4.102 21 C -0.142 4.142 22 C -0.022 4.022 23 Cl -0.017 7.017 24 C -0.016 4.016 25 H 0.081 0.919 26 H 0.236 0.764 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.254 0.746 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.085 0.915 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.026 -17.071 -4.542 17.781 hybrid contribution 0.217 1.451 0.267 1.491 sum 2.244 -15.620 -4.275 16.349 Atomic orbital electron populations 1.69640 1.06027 1.28029 1.49603 1.25070 0.95036 0.99794 0.93306 0.86399 0.79785 0.82402 0.78315 1.20390 1.20970 1.19679 1.21502 0.93673 0.90076 1.52474 0.91497 1.19473 0.86155 0.92029 0.81443 1.86091 1.51729 1.55026 1.46573 1.22751 0.97465 0.94920 1.00318 1.22294 0.93332 0.95220 0.91120 1.48844 1.49557 1.12592 1.22286 1.17379 0.80182 0.85668 0.80965 1.90800 1.40259 1.61601 1.48100 1.20367 0.97487 0.94793 1.00712 1.18273 0.89897 0.88219 0.93227 1.84802 1.37172 1.61102 1.46466 1.21456 1.01411 0.91529 1.01868 1.21056 0.93184 0.99988 0.95934 1.21017 0.99493 0.93416 1.00228 1.20820 0.91348 0.93255 0.96774 1.98423 1.43739 1.90989 1.68524 1.23167 1.01942 0.77338 0.99200 0.91899 0.76446 0.90465 0.90400 0.92739 0.91500 0.74576 0.84256 0.84302 0.84188 0.91461 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.67 10.96 55.43 0.61 -23.06 16 2 C 0.07 1.84 5.27 -17.82 -0.09 1.74 16 3 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.54 -13.79 8.11 -34.44 -0.28 -14.07 16 8 H 0.07 1.67 7.77 -52.49 -0.41 1.27 16 9 C 0.25 5.89 0.85 -89.94 -0.08 5.81 16 10 O -0.58 -14.52 13.07 -35.23 -0.46 -14.98 16 11 C -0.12 -2.22 6.22 -24.58 -0.15 -2.37 16 12 C 0.10 1.78 6.67 -2.53 -0.02 1.77 16 13 N -0.60 -12.29 3.34 -171.41 -0.57 -12.86 16 14 C 0.57 11.86 5.87 -12.50 -0.07 11.79 16 15 O -0.53 -13.23 17.43 5.29 0.09 -13.14 16 16 C -0.13 -2.12 4.54 -104.82 -0.48 -2.59 16 17 C 0.15 2.05 6.72 -38.70 -0.26 1.79 16 18 O -0.48 -6.63 12.95 -18.66 -0.24 -6.87 16 19 C -0.14 -1.45 9.97 -39.47 -0.39 -1.84 16 20 C -0.08 -0.73 10.03 -39.55 -0.40 -1.12 16 21 C -0.12 -1.29 9.81 -39.59 -0.39 -1.68 16 22 C 0.01 0.08 6.35 -39.08 -0.25 -0.17 16 23 Cl -0.05 -0.71 28.04 -51.86 -1.45 -2.17 16 24 C 0.10 2.51 5.41 -2.81 -0.02 2.50 16 25 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.38 9.87 7.23 45.56 0.33 10.20 16 27 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 29 H 0.05 0.76 7.69 -51.93 -0.40 0.36 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.40 3.72 9.06 45.56 0.41 4.13 16 32 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 34 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.07 1.79 8.00 -51.93 -0.42 1.37 16 36 H 0.07 1.80 7.82 -51.93 -0.41 1.39 16 LS Contribution 326.86 15.07 4.93 4.93 Total: -1.00 -31.66 326.86 -7.55 -39.20 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -2.55 Total: 12.17 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -2.87 Total: 1.55 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.04 Total: -35.93 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.61 Total: -34.99 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.45 Total: -2.17 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.66 -7.55 -39.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015169.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.495 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds