Wall clock time and date at job start Tue Mar 31 2020 09:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38092 * 119.78097 * 2 1 4 4 C 1.38633 * 120.12386 * 179.97438 * 3 2 1 5 5 O 1.35625 * 120.15496 * 179.97438 * 4 3 2 6 6 C 1.42894 * 116.99851 * 0.02562 * 5 4 3 7 7 C 1.50706 * 109.47263 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99503 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00081 * 179.72605 * 7 6 5 10 10 C 1.46506 * 119.99968 * 180.02562 * 9 7 6 11 11 C 1.50690 * 109.47072 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00210 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99820 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00036 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 120.00010 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47177 * 59.99528 * 15 13 11 17 17 H 1.48496 * 109.46992 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46935 * 299.99881 * 15 13 11 19 19 C 1.40461 * 119.69180 * 0.25918 * 4 3 2 20 20 C 1.46790 * 120.22224 * 179.74878 * 19 4 3 21 21 O 1.21296 * 120.00302 * 179.97438 * 20 19 4 22 22 C 1.39989 * 119.56284 * 359.51337 * 19 4 3 23 23 C 1.37816 * 119.86639 * 0.48713 * 22 19 4 24 24 Cl 1.73605 * 119.84580 * 179.72439 * 23 22 19 25 25 H 1.09002 * 109.47007 * 89.99625 * 1 2 3 26 26 H 1.08996 * 109.47072 * 210.00203 * 1 2 3 27 27 H 1.09000 * 109.46694 * 329.99764 * 1 2 3 28 28 H 1.07999 * 119.93588 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47678 * 59.99831 * 6 5 4 30 30 H 1.08998 * 109.47532 * 299.99777 * 6 5 4 31 31 H 0.96998 * 120.00525 * 359.97438 * 9 7 6 32 32 H 1.09004 * 109.46587 * 299.99661 * 10 9 7 33 33 H 1.08998 * 109.47213 * 59.99069 * 10 9 7 34 34 H 0.97005 * 119.99861 * 179.97438 * 14 13 11 35 35 H 1.07997 * 119.99425 * 359.97438 * 20 19 4 36 36 H 1.07998 * 120.06542 * 180.23026 * 22 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1929 1.1985 0.0000 4 6 3.5792 1.2068 0.0005 5 8 4.2535 2.3836 0.0000 6 6 3.4713 3.5794 -0.0005 7 6 4.3853 4.7777 -0.0004 8 8 5.5882 4.6227 0.0005 9 7 3.8661 6.0213 -0.0064 10 6 4.7547 7.1861 -0.0069 11 6 3.9298 8.4472 -0.0148 12 1 2.8515 8.3871 -0.0194 13 6 4.5517 9.6777 -0.0161 14 7 5.8648 9.7509 -0.0099 15 14 3.5292 11.2411 -0.0251 16 1 2.6673 11.2758 1.1837 17 1 4.4299 12.4217 -0.0244 18 1 2.6774 11.2683 -1.2412 19 6 4.2823 -0.0091 -0.0044 20 6 5.7501 -0.0139 -0.0095 21 8 6.3532 -1.0663 -0.0133 22 6 3.5739 -1.2166 0.0005 23 6 2.1958 -1.2037 -0.0001 24 17 1.3178 -2.7014 -0.0012 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6483 2.1312 0.0004 29 1 2.8423 3.6027 0.8894 30 1 2.8424 3.6019 -0.8905 31 1 2.9041 6.1453 -0.0112 32 1 5.3802 7.1662 0.8856 33 1 5.3871 7.1604 -0.8943 34 1 6.3023 10.6167 -0.0112 35 1 6.2931 0.9196 -0.0098 36 1 4.1062 -2.1562 0.0004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849982821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:51 Heat of formation + Delta-G solvation = -118.845245 kcal Electronic energy + Delta-G solvation = -22034.268176 eV Core-core repulsion = 18315.863431 eV Total energy + Delta-G solvation = -3718.404745 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.82028 -40.57054 -39.68436 -38.83291 -37.20423 -36.15669 -34.39406 -34.00711 -31.47128 -30.41515 -29.08625 -28.22097 -24.83718 -24.63368 -23.36868 -22.14040 -21.47801 -19.25705 -19.03281 -18.22727 -17.72395 -17.51998 -17.24107 -16.90545 -16.21182 -15.96040 -15.83826 -15.47679 -15.40985 -15.25279 -14.84878 -14.79459 -14.15784 -13.96836 -13.88002 -13.56050 -13.31106 -12.95255 -12.88098 -12.80797 -12.64354 -12.55262 -12.22322 -11.89624 -11.69081 -11.50000 -10.94321 -10.79735 -10.78132 -10.10365 -9.88341 -9.32379 -8.27338 -6.43830 -0.57606 0.05406 1.07047 1.26077 1.44111 1.49530 1.50445 1.58277 1.63458 2.38101 2.46826 2.74393 3.08327 3.18071 3.53731 3.59495 3.77517 3.84625 4.06305 4.13757 4.22786 4.25899 4.54784 4.63841 4.69386 4.79459 4.92372 5.10876 5.13469 5.23010 5.25255 5.39263 5.45808 5.65906 5.85139 6.03340 6.31908 6.66455 6.84010 7.24732 7.43322 8.84441 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.002496 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.351917 B =11217.286258 C =12399.856908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.008 3.992 3 C -0.210 4.210 4 C 0.193 3.807 5 O -0.303 6.303 6 C 0.047 3.953 7 C 0.495 3.505 8 O -0.589 6.589 9 N -0.697 5.697 10 C 0.266 3.734 11 C -0.554 4.554 12 H 0.089 0.911 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.983 3.017 16 H -0.261 1.261 17 H -0.290 1.290 18 H -0.261 1.261 19 C -0.237 4.237 20 C 0.397 3.603 21 O -0.500 6.500 22 C -0.014 4.014 23 C -0.101 4.101 24 Cl -0.058 7.058 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.180 0.820 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.415 0.585 32 H -0.010 1.010 33 H -0.010 1.010 34 H 0.268 0.732 35 H 0.120 0.880 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.129 -19.676 -0.021 26.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.007 3.993 3 C -0.228 4.228 4 C 0.145 3.855 5 O -0.214 6.214 6 C -0.030 4.030 7 C 0.281 3.719 8 O -0.470 6.470 9 N -0.349 5.349 10 C 0.143 3.857 11 C -0.592 4.592 12 H 0.107 0.893 13 C -0.197 4.197 14 N -0.570 5.570 15 Si 0.806 3.194 16 H -0.186 1.186 17 H -0.216 1.216 18 H -0.185 1.185 19 C -0.239 4.239 20 C 0.259 3.741 21 O -0.377 6.377 22 C -0.033 4.033 23 C -0.128 4.128 24 Cl -0.030 7.030 25 H 0.115 0.885 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.198 0.802 29 H 0.155 0.845 30 H 0.155 0.845 31 H 0.251 0.749 32 H 0.008 0.992 33 H 0.008 0.992 34 H 0.077 0.923 35 H 0.137 0.863 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.680 -20.284 -0.018 25.638 hybrid contribution -0.134 0.888 -0.005 0.898 sum -15.814 -19.396 -0.023 25.026 Atomic orbital electron populations 1.21127 0.87421 1.05201 1.04665 1.20132 0.98481 0.89936 0.90772 1.21442 0.91374 1.00482 1.09517 1.19346 0.91362 0.84383 0.90426 1.86070 1.36132 1.12283 1.86933 1.22806 0.92495 0.79811 1.07873 1.20866 0.89035 0.85290 0.76689 1.90712 1.18030 1.86718 1.51508 1.45984 1.11582 1.04763 1.72575 1.18582 0.89804 0.82870 0.94399 1.21593 0.94403 0.90413 1.52801 0.89267 1.26054 0.96123 1.03502 0.93975 1.70131 1.10301 1.26629 1.49980 0.85231 0.77941 0.76639 0.79563 1.18559 1.21586 1.18549 1.20123 0.96600 0.91176 1.16040 1.24033 0.88456 0.93405 0.68182 1.90491 1.72027 1.37512 1.37642 1.21139 0.92297 0.97835 0.92040 1.20664 0.91771 0.88122 1.12200 1.98361 1.75689 1.31717 1.97195 0.88514 0.90283 0.88326 0.80235 0.84540 0.84536 0.74870 0.99233 0.99241 0.92323 0.86339 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 9.60 71.24 0.68 -0.27 16 2 C 0.01 0.10 5.89 -19.79 -0.12 -0.01 16 3 C -0.21 -2.79 8.67 22.33 0.19 -2.59 16 4 C 0.19 3.82 6.71 22.91 0.15 3.97 16 5 O -0.30 -7.34 8.85 -70.34 -0.62 -7.96 16 6 C 0.05 0.92 5.22 71.24 0.37 1.30 16 7 C 0.50 17.14 7.91 87.66 0.69 17.83 16 8 O -0.59 -27.53 16.50 16.00 0.26 -27.27 16 9 N -0.70 -25.31 5.55 -466.79 -2.59 -27.90 16 10 C 0.27 13.58 5.43 85.63 0.46 14.04 16 11 C -0.55 -28.06 9.28 25.60 0.24 -27.82 16 12 H 0.09 3.95 7.60 -2.91 -0.02 3.93 16 13 C 0.00 0.17 5.46 84.66 0.46 0.63 16 14 N -0.93 -54.47 13.29 21.45 0.28 -54.19 16 15 Si 0.98 40.19 29.54 68.60 2.03 42.22 16 16 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 17 H -0.29 -12.01 7.11 99.48 0.71 -11.31 16 18 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 19 C -0.24 -5.33 5.88 -20.08 -0.12 -5.45 16 20 C 0.40 10.29 11.19 70.06 0.78 11.08 16 21 O -0.50 -15.54 17.16 -3.08 -0.05 -15.59 16 22 C -0.01 -0.29 9.37 22.59 0.21 -0.08 16 23 C -0.10 -1.71 6.30 22.28 0.14 -1.57 16 24 Cl -0.06 -0.90 27.25 -2.72 -0.07 -0.97 16 25 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.08 0.64 6.88 -2.39 -0.02 0.62 16 27 H 0.10 0.38 8.08 -2.39 -0.02 0.36 16 28 H 0.18 1.12 6.30 -2.91 -0.02 1.10 16 29 H 0.14 1.60 7.66 -2.39 -0.02 1.58 16 30 H 0.14 1.60 7.66 -2.39 -0.02 1.58 16 31 H 0.41 11.20 8.32 -92.71 -0.77 10.43 16 32 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 33 H -0.01 -0.61 8.14 -2.39 -0.02 -0.62 16 34 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 35 H 0.12 2.99 7.63 -2.91 -0.02 2.97 16 36 H 0.14 2.99 7.65 -2.91 -0.02 2.96 16 Total: -1.00 -75.53 336.85 3.76 -71.77 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.36 Total: 8.83 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 4.16 Total: 11.05 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -2.30 Total: -82.09 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -0.41 Total: -50.82 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.07 Total: -0.97 kcal Total: -75.53 3.76 -71.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849982821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.075 kcal (2) G-P(sol) polarization free energy of solvation -75.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds