Wall clock time and date at job start Tue Mar 31 2020 09:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38240 * 120.00830 * 2 1 4 4 C 1.38214 * 120.01329 * 179.97438 * 3 2 1 5 5 C 1.38265 * 120.03154 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99863 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47486 * 89.99819 * 6 5 4 8 8 O 1.20833 * 119.99747 * 0.02562 * 7 6 5 9 9 O 1.34230 * 120.00262 * 179.72204 * 7 6 5 10 10 C 1.45202 * 116.99836 * 180.27336 * 9 7 6 11 11 C 1.50701 * 109.46859 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00079 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99566 * 180.02562 * 11 10 9 14 14 C 1.37102 * 119.99580 * 180.02562 * 13 11 10 15 15 H 1.07995 * 120.00075 * 0.02562 * 14 13 11 16 16 C 1.38949 * 119.99723 * 179.97438 * 14 13 11 17 17 N 1.31412 * 120.00524 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99739 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47073 * 90.00601 * 18 16 14 20 20 H 1.48505 * 109.47135 * 210.00601 * 18 16 14 21 21 H 1.48500 * 109.47214 * 330.00307 * 18 16 14 22 22 C 1.38197 * 120.00613 * 0.23728 * 5 4 3 23 23 C 1.38339 * 120.00675 * 179.97438 * 2 1 3 24 24 Cl 1.73601 * 120.01241 * 0.04504 * 23 2 1 25 25 H 1.09005 * 109.46625 * 90.00798 * 1 2 3 26 26 H 1.08994 * 109.47232 * 210.00152 * 1 2 3 27 27 H 1.09001 * 109.47324 * 330.00622 * 1 2 3 28 28 H 1.07994 * 119.99243 * 359.94628 * 3 2 1 29 29 H 1.08001 * 119.98689 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.47069 * 330.00021 * 6 5 4 31 31 H 1.09000 * 109.47237 * 210.00527 * 6 5 4 32 32 H 1.08998 * 109.47630 * 300.00638 * 10 9 7 33 33 H 1.09004 * 109.46770 * 60.01042 * 10 9 7 34 34 H 0.97001 * 120.00823 * 359.97438 * 13 11 10 35 35 H 0.96995 * 120.00385 * 179.97438 * 17 16 14 36 36 H 1.08009 * 120.00304 * 179.74435 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2726 0.0002 0.0005 6 6 5.7795 0.0012 0.0005 7 6 6.2819 0.0016 1.4213 8 8 5.4967 0.0007 2.3397 9 8 7.6016 -0.0031 1.6665 10 6 8.0133 -0.0086 3.0590 11 6 9.5182 -0.0128 3.1378 12 8 10.1788 -0.0108 2.1206 13 7 10.1300 -0.0187 4.3387 14 6 11.4991 -0.0220 4.4104 15 1 12.0873 -0.0194 3.5047 16 6 12.1299 -0.0276 5.6485 17 7 11.4143 -0.0302 6.7506 18 14 13.9954 -0.0328 5.7462 19 1 14.4933 1.3659 5.7766 20 1 14.4245 -0.7380 6.9806 21 1 14.5514 -0.7304 4.5590 22 6 3.5825 -1.1971 -0.0050 23 6 2.1988 -1.1980 0.0005 24 17 1.3313 -2.7017 0.0000 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6584 2.1324 -0.0009 29 1 4.1202 2.1327 0.0001 30 1 6.1422 0.8915 -0.5133 31 1 6.1434 -0.8885 -0.5134 32 1 7.6262 0.8809 3.5559 33 1 7.6209 -0.8991 3.5503 34 1 9.6018 -0.0199 5.1522 35 1 11.8546 -0.0345 7.6148 36 1 4.1232 -2.1321 -0.0091 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924273349.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:26 Heat of formation + Delta-G solvation = -113.952692 kcal Electronic energy + Delta-G solvation = -21835.949317 eV Core-core repulsion = 18117.756729 eV Total energy + Delta-G solvation = -3718.192588 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.59294 -39.59765 -38.13534 -36.77712 -36.11520 -34.13291 -34.01052 -31.39899 -31.05314 -30.43194 -28.32110 -25.90904 -24.52078 -23.14981 -21.86224 -20.56443 -19.58667 -18.08648 -17.59977 -16.86846 -16.70327 -16.00530 -15.95032 -15.60004 -15.46896 -14.56641 -14.36304 -14.24953 -14.04338 -13.93411 -13.27006 -13.00485 -12.98114 -12.65520 -12.46890 -12.03188 -11.99410 -11.91085 -11.63064 -11.60279 -11.50506 -11.14062 -11.01033 -10.45386 -10.44832 -10.41991 -10.29644 -9.61477 -9.12026 -8.83348 -8.53001 -8.09310 -6.50778 -3.92947 0.82141 0.95782 1.86891 2.29416 2.68950 3.12649 3.22825 3.28468 3.38853 3.72824 4.11500 4.22882 4.41857 4.56182 4.69927 4.76990 4.88950 5.06455 5.11150 5.14303 5.23147 5.26945 5.30556 5.39379 5.52796 5.57596 5.68888 5.74868 5.88732 6.04727 6.08157 6.16580 6.48745 6.63371 7.46970 7.83283 7.95495 8.47568 9.06191 9.38454 9.88260 10.66444 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.033282 B = 0.002171 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.099038 B =12896.603779 C =13073.134641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.075 4.075 3 C -0.108 4.108 4 C -0.093 4.093 5 C -0.066 4.066 6 C -0.073 4.073 7 C 0.457 3.543 8 O -0.506 6.506 9 O -0.326 6.326 10 C 0.061 3.939 11 C 0.438 3.562 12 O -0.576 6.576 13 N -0.553 5.553 14 C -0.302 4.302 15 H 0.106 0.894 16 C 0.025 3.975 17 N -0.897 5.897 18 Si 0.934 3.066 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.268 1.268 22 C -0.089 4.089 23 C -0.036 4.036 24 Cl -0.070 7.070 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.395 0.605 35 H 0.274 0.726 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.158 0.415 -12.927 24.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.076 4.076 3 C -0.126 4.126 4 C -0.111 4.111 5 C -0.067 4.067 6 C -0.111 4.111 7 C 0.300 3.700 8 O -0.394 6.394 9 O -0.240 6.240 10 C -0.016 4.016 11 C 0.223 3.777 12 O -0.460 6.460 13 N -0.190 5.190 14 C -0.432 4.432 15 H 0.124 0.876 16 C -0.178 4.178 17 N -0.538 5.538 18 Si 0.761 3.239 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.193 1.193 22 C -0.108 4.108 23 C -0.063 4.063 24 Cl -0.041 7.041 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.228 0.772 35 H 0.084 0.916 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.930 0.267 -13.101 24.694 hybrid contribution 0.492 -0.149 0.937 1.068 sum -20.438 0.118 -12.164 23.785 Atomic orbital electron populations 1.20874 0.90296 1.03567 1.02843 1.19794 0.96758 0.91467 0.99591 1.20951 0.93929 0.97145 1.00607 1.21130 0.94285 0.97738 0.97922 1.19207 0.93699 0.93023 1.00753 1.20270 0.91555 1.07426 0.91814 1.23514 0.81115 0.73054 0.92347 1.90688 1.56912 1.45202 1.46617 1.86543 1.24281 1.82967 1.30244 1.22747 0.96115 1.03493 0.79285 1.19324 0.87277 0.85971 0.85141 1.90558 1.65764 1.55279 1.34448 1.41715 1.07666 1.63803 1.05829 1.19726 0.80895 1.48198 0.94335 0.87603 1.25320 1.00947 0.96889 0.94636 1.69612 1.36554 1.49644 0.97960 0.85794 0.81716 0.78495 0.77920 1.20252 1.20808 1.19267 1.20897 0.92006 0.98645 0.99207 1.20707 0.92194 0.86749 1.06601 1.98358 1.76776 1.32020 1.96924 0.90668 0.90802 0.91025 0.84933 0.85161 0.86204 0.86317 0.89564 0.89558 0.77151 0.91612 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 9.62 36.00 0.35 -0.48 16 2 C -0.08 -0.70 5.88 -104.59 -0.62 -1.32 16 3 C -0.11 -0.94 9.70 -39.59 -0.38 -1.33 16 4 C -0.09 -0.88 9.70 -39.58 -0.38 -1.26 16 5 C -0.07 -0.70 4.37 -104.63 -0.46 -1.15 16 6 C -0.07 -0.75 5.94 -29.04 -0.17 -0.92 16 7 C 0.46 6.85 7.95 36.00 0.29 7.14 16 8 O -0.51 -8.71 15.78 -18.76 -0.30 -9.01 16 9 O -0.33 -5.89 9.75 -45.90 -0.45 -6.34 16 10 C 0.06 1.16 5.94 36.01 0.21 1.37 16 11 C 0.44 10.53 7.86 -10.99 -0.09 10.44 16 12 O -0.58 -15.94 16.08 -14.11 -0.23 -16.17 16 13 N -0.55 -13.97 5.29 -10.97 -0.06 -14.03 16 14 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 15 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 16 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 17 N -0.90 -24.07 13.05 55.50 0.72 -23.34 16 18 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 C -0.09 -0.95 9.48 -39.55 -0.38 -1.32 16 23 C -0.04 -0.37 6.31 -39.50 -0.25 -0.62 16 24 Cl -0.07 -0.68 27.30 -51.86 -1.42 -2.09 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.53 6.90 -51.93 -0.36 0.18 16 27 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 28 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.12 0.96 8.09 -51.93 -0.42 0.54 16 31 H 0.12 1.00 8.08 -51.93 -0.42 0.58 16 32 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 33 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 34 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 35 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 LS Contribution 339.18 15.07 5.11 5.11 Total: -1.00 -33.02 339.18 -7.74 -40.76 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -3.99 Total: 6.86 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.12 Total: 2.62 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.67 Total: -37.37 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.97 Total: -31.51 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.42 Total: -2.09 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.02 -7.74 -40.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924273349.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.195 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds