Wall clock time and date at job start Tue Mar 31 2020 10:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47253 * 2 1 4 4 H 1.08998 * 109.47181 * 174.08724 * 3 2 1 5 5 C 1.50705 * 109.47486 * 54.08293 * 3 2 1 6 6 H 1.07992 * 120.00090 * 240.00549 * 5 3 2 7 7 C 1.37878 * 119.99286 * 59.99892 * 5 3 2 8 8 N 1.31516 * 120.00319 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99664 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46882 * 60.00277 * 9 7 5 11 11 H 1.48499 * 109.47203 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47023 * 300.00443 * 9 7 5 13 13 N 1.46902 * 109.46729 * 294.08732 * 3 2 1 14 14 C 1.46903 * 110.99965 * 275.75666 * 13 3 2 15 15 C 1.50704 * 109.46977 * 176.23593 * 14 13 3 16 16 C 1.38245 * 120.00399 * 260.27627 * 15 14 13 17 17 C 1.38217 * 120.00689 * 180.25719 * 16 15 14 18 18 C 1.38258 * 120.02010 * 359.49342 * 17 16 15 19 19 C 1.38189 * 120.01071 * 0.22919 * 18 17 16 20 20 C 1.50701 * 120.00372 * 180.02562 * 19 18 17 21 21 C 1.38297 * 120.00494 * 80.00328 * 15 14 13 22 22 Br 1.89096 * 120.01104 * 359.97438 * 21 15 14 23 23 H 1.09001 * 109.47172 * 298.56282 * 1 2 3 24 24 H 1.09004 * 109.46838 * 58.56165 * 1 2 3 25 25 H 1.09001 * 109.47481 * 178.56087 * 1 2 3 26 26 H 1.09000 * 109.46951 * 239.99413 * 2 1 3 27 27 H 1.09003 * 109.46497 * 119.99961 * 2 1 3 28 28 H 0.97002 * 119.99763 * 179.97438 * 8 7 5 29 29 H 1.00896 * 111.00254 * 39.71379 * 13 3 2 30 30 H 1.09000 * 109.46803 * 56.23718 * 14 13 3 31 31 H 1.08995 * 109.47123 * 296.23857 * 14 13 3 32 32 H 1.08007 * 119.99400 * 0.02562 * 16 15 14 33 33 H 1.07999 * 119.98398 * 179.77022 * 17 16 15 34 34 H 1.08001 * 119.99009 * 180.25555 * 18 17 16 35 35 H 1.09002 * 109.47442 * 90.00433 * 20 19 18 36 36 H 1.09004 * 109.46961 * 210.00067 * 20 19 18 37 37 H 1.09000 * 109.47478 * 330.00114 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1249 1.4442 0.1059 5 6 1.4218 2.1940 1.1507 6 1 0.8149 3.0670 0.9616 7 6 1.6308 1.7667 2.4448 8 7 2.3702 0.7037 2.6750 9 14 0.8650 2.6986 3.8713 10 1 -0.6129 2.6968 3.7272 11 1 1.2391 2.0418 5.1495 12 1 1.3607 4.0984 3.8710 13 7 1.6703 2.0924 -1.2644 14 6 2.6514 1.7941 -2.3163 15 6 2.1921 2.3991 -3.6179 16 6 1.5670 1.6094 -4.5649 17 6 1.1505 2.1631 -5.7608 18 6 1.3493 3.5091 -6.0063 19 6 1.9688 4.3005 -5.0579 20 6 2.1849 5.7678 -5.3253 21 6 2.3907 3.7457 -3.8628 22 35 3.2380 4.8282 -2.5644 23 1 -0.3633 0.4914 0.9026 24 1 -0.3633 0.5360 -0.8768 25 1 -0.3634 -1.0273 -0.0258 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.5175 0.4034 3.5856 29 1 0.7407 1.8244 -1.5505 30 1 2.7445 0.7141 -2.4305 31 1 3.6184 2.2150 -2.0412 32 1 1.4076 0.5588 -4.3717 33 1 0.6656 1.5450 -6.5019 34 1 1.0199 3.9421 -6.9392 35 1 1.3235 6.3328 -4.9692 36 1 3.0809 6.1041 -4.8035 37 1 2.3067 5.9278 -6.3966 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930693063.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:37 Heat of formation + Delta-G solvation = 17.055756 kcal Electronic energy + Delta-G solvation = -18081.153585 eV Core-core repulsion = 15290.047359 eV Total energy + Delta-G solvation = -2791.106227 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.47876 -36.50610 -33.60616 -32.76948 -31.60974 -30.20213 -28.99986 -26.85050 -26.46041 -24.34575 -23.15232 -21.62427 -20.49812 -19.23784 -16.50369 -15.97165 -15.79806 -14.89383 -14.69795 -14.22734 -13.91552 -13.55649 -13.16295 -12.94619 -12.74111 -12.41994 -12.29548 -12.05380 -11.92942 -11.52521 -11.20705 -10.95341 -10.83398 -10.62404 -10.53834 -10.46443 -9.94550 -9.82181 -9.57212 -9.41300 -8.94849 -8.57871 -8.40077 -8.29159 -7.14109 -5.92381 -3.92940 1.24910 1.36666 2.05110 3.37747 3.41781 3.45578 3.68818 4.49340 4.78039 4.81775 4.96689 5.24137 5.38486 5.39624 5.53299 5.57632 5.60123 5.70151 5.86248 5.98835 6.11301 6.31561 6.36237 6.38954 6.42452 6.45839 6.58791 6.65322 6.91124 6.93481 7.30659 7.32955 7.53591 7.73226 7.94354 8.32550 8.58923 8.66984 9.12486 9.70171 11.14810 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.019149 B = 0.005208 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.834535 B = 5374.903268 C = 6344.258508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.218 3.782 4 H 0.034 0.966 5 C -0.483 4.483 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.668 5.668 14 C 0.088 3.912 15 C -0.040 4.040 16 C -0.120 4.120 17 C -0.106 4.106 18 C -0.127 4.127 19 C -0.064 4.064 20 C -0.122 4.122 21 C -0.072 4.072 22 Br -0.032 7.032 23 H 0.066 0.934 24 H 0.029 0.971 25 H 0.021 0.979 26 H 0.009 0.991 27 H 0.092 0.908 28 H 0.258 0.742 29 H 0.325 0.675 30 H 0.030 0.970 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 5.481 -16.972 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.185 4.185 3 C 0.111 3.889 4 H 0.051 0.949 5 C -0.522 4.522 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.299 5.299 14 C -0.041 4.041 15 C -0.043 4.043 16 C -0.139 4.139 17 C -0.124 4.124 18 C -0.146 4.146 19 C -0.067 4.067 20 C -0.179 4.179 21 C -0.152 4.152 22 Br 0.055 6.945 23 H 0.085 0.915 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.028 0.972 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.144 0.856 30 H 0.048 0.952 31 H 0.099 0.901 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.947 6.396 -16.122 17.370 hybrid contribution -0.881 -0.904 0.316 1.301 sum 0.067 5.491 -15.806 16.733 Atomic orbital electron populations 1.21562 0.97702 0.97883 1.01283 1.22119 0.95002 1.01287 1.00128 1.19192 0.96127 0.88438 0.85185 0.94859 1.20999 1.30251 1.11358 0.89605 0.92070 1.24887 0.95643 0.95176 0.98605 1.69874 1.39368 1.24218 1.20296 0.86659 0.79607 0.80084 0.81624 1.20446 1.21592 1.20393 1.60917 1.03330 1.62989 1.02624 1.21039 0.98218 0.96788 0.88088 1.20038 0.95868 0.91969 0.96405 1.21084 0.99223 1.00012 0.93631 1.21153 0.99154 0.95116 0.97023 1.20908 1.00736 0.93818 0.99104 1.19783 0.97553 0.96618 0.92704 1.20960 1.03291 0.91439 1.02201 1.21685 1.04777 0.94403 0.94374 1.96700 1.77632 1.66313 1.53878 0.91509 0.95219 0.96020 0.97186 0.88960 0.93165 0.85647 0.95203 0.90060 0.85637 0.85881 0.85792 0.90630 0.90558 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.39 37.16 0.35 -2.35 16 2 C -0.15 -3.38 5.50 -26.73 -0.15 -3.52 16 3 C 0.22 5.32 2.33 -68.86 -0.16 5.16 16 4 H 0.03 0.91 7.86 -51.93 -0.41 0.50 16 5 C -0.48 -13.01 7.35 -34.44 -0.25 -13.26 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.56 5.22 -17.82 -0.09 1.47 16 8 N -0.90 -25.30 11.39 55.43 0.63 -24.67 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.67 -13.97 6.24 -109.22 -0.68 -14.65 16 14 C 0.09 1.60 4.94 -4.97 -0.02 1.58 16 15 C -0.04 -0.64 5.36 -104.60 -0.56 -1.20 16 16 C -0.12 -1.63 9.67 -39.59 -0.38 -2.02 16 17 C -0.11 -1.23 10.05 -39.58 -0.40 -1.62 16 18 C -0.13 -1.45 9.70 -39.59 -0.38 -1.84 16 19 C -0.06 -0.84 5.88 -104.60 -0.62 -1.46 16 20 C -0.12 -1.29 9.55 36.01 0.34 -0.95 16 21 C -0.07 -1.12 6.22 -39.52 -0.25 -1.36 16 22 Br -0.03 -0.51 30.10 -68.01 -2.05 -2.56 16 23 H 0.07 1.57 7.05 -51.93 -0.37 1.20 16 24 H 0.03 0.57 6.42 -51.93 -0.33 0.24 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.01 0.20 7.24 -51.93 -0.38 -0.17 16 27 H 0.09 2.41 6.25 -51.93 -0.32 2.08 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.33 6.67 6.55 -39.29 -0.26 6.41 16 30 H 0.03 0.54 7.10 -51.93 -0.37 0.17 16 31 H 0.08 1.56 7.13 -51.93 -0.37 1.19 16 32 H 0.13 1.55 8.04 -52.48 -0.42 1.13 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.83 6.65 -51.93 -0.35 0.49 16 37 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 LS Contribution 316.63 15.07 4.77 4.77 Total: -1.00 -27.97 316.63 -10.15 -38.12 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.23 Total: 3.87 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -2.57 Total: -21.37 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -0.05 Total: -39.32 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.05 Total: -2.56 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.97 -10.15 -38.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930693063.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.174 kcal (2) G-P(sol) polarization free energy of solvation -27.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds