Wall clock time and date at job start Tue Mar 31 2020 10:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47100 * 2 1 4 4 H 1.08994 * 109.46880 * 54.83475 * 3 2 1 5 5 C 1.50701 * 109.47329 * 174.83898 * 3 2 1 6 6 H 1.08000 * 120.00077 * 119.99658 * 5 3 2 7 7 C 1.37878 * 119.99985 * 300.00193 * 5 3 2 8 8 N 1.31520 * 119.99576 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00131 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47356 * 59.99399 * 9 7 5 11 11 H 1.48493 * 109.47509 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46951 * 299.99758 * 9 7 5 13 13 N 1.46900 * 109.46660 * 294.84158 * 3 2 1 14 14 C 1.46904 * 110.99736 * 152.46317 * 13 3 2 15 15 C 1.50704 * 109.46812 * 178.33479 * 14 13 3 16 16 C 1.38249 * 120.00233 * 260.27541 * 15 14 13 17 17 C 1.38218 * 120.00750 * 180.25731 * 16 15 14 18 18 C 1.38268 * 120.01860 * 359.48721 * 17 16 15 19 19 C 1.38191 * 120.00919 * 0.23471 * 18 17 16 20 20 C 1.50702 * 120.00121 * 179.97438 * 19 18 17 21 21 C 1.38300 * 120.00782 * 79.99635 * 15 14 13 22 22 Br 1.89099 * 120.00750 * 0.02598 * 21 15 14 23 23 H 1.08990 * 109.46989 * 305.50622 * 1 2 3 24 24 H 1.08997 * 109.46967 * 65.51092 * 1 2 3 25 25 H 1.08998 * 109.46490 * 185.50853 * 1 2 3 26 26 H 1.08993 * 109.47408 * 239.99919 * 2 1 3 27 27 H 1.09003 * 109.47031 * 119.99632 * 2 1 3 28 28 H 0.97001 * 119.99622 * 180.02562 * 8 7 5 29 29 H 1.00898 * 111.00438 * 28.50388 * 13 3 2 30 30 H 1.08999 * 109.47077 * 58.33992 * 14 13 3 31 31 H 1.08994 * 109.47308 * 298.32898 * 14 13 3 32 32 H 1.07996 * 119.99867 * 359.97438 * 16 15 14 33 33 H 1.07999 * 119.99098 * 179.76648 * 17 16 15 34 34 H 1.08003 * 119.99140 * 180.25328 * 18 17 16 35 35 H 1.08996 * 109.47156 * 90.00573 * 20 19 18 36 36 H 1.09001 * 109.47237 * 209.99917 * 20 19 18 37 37 H 1.08993 * 109.47546 * 329.99839 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6031 1.9823 0.8401 5 6 3.5416 1.4445 0.1278 6 1 4.1490 1.8883 -0.6472 7 6 4.1401 0.8796 1.2341 8 7 3.4004 0.3396 2.1779 9 14 6.0012 0.8827 1.3929 10 1 6.4958 2.2830 1.3931 11 1 6.3908 0.2204 2.6636 12 1 6.5969 0.1477 0.2482 13 7 1.6546 2.0981 -1.2569 14 6 1.5168 3.5490 -1.0731 15 6 1.1615 4.1906 -2.3897 16 6 2.1419 4.8058 -3.1457 17 6 1.8152 5.3988 -4.3507 18 6 0.5099 5.3678 -4.8056 19 6 -0.4697 4.7480 -4.0532 20 6 -1.8925 4.7149 -4.5488 21 6 -0.1442 4.1589 -2.8445 22 35 -1.4843 3.3113 -1.8142 23 1 -0.3633 0.5968 0.8365 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3632 -1.0229 0.0987 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8214 -0.0575 2.9564 29 1 0.8058 1.6982 -1.6278 30 1 2.4589 3.9605 -0.7110 31 1 0.7293 3.7501 -0.3469 32 1 3.1623 4.8270 -2.7927 33 1 2.5806 5.8827 -4.9393 34 1 0.2559 5.8278 -5.7491 35 1 -2.0463 3.8202 -5.1521 36 1 -2.5734 4.7005 -3.6978 37 1 -2.0869 5.5997 -5.1548 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930693066.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:38 Heat of formation + Delta-G solvation = 14.567727 kcal Electronic energy + Delta-G solvation = -18083.197498 eV Core-core repulsion = 15291.983382 eV Total energy + Delta-G solvation = -2791.214116 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.47387 -36.33747 -33.55667 -32.84505 -31.73886 -30.54030 -29.15893 -26.85938 -26.65793 -24.50559 -22.53906 -21.55204 -20.46188 -19.46916 -16.30308 -16.28096 -15.73615 -14.90647 -14.78722 -14.29003 -14.02645 -13.71603 -13.12669 -13.05651 -12.57009 -12.49805 -12.37206 -12.08425 -11.80974 -11.43340 -11.22956 -10.97159 -10.90749 -10.76740 -10.69843 -10.59305 -9.96818 -9.78585 -9.63808 -9.60021 -9.08731 -8.52724 -8.48733 -8.30691 -7.18809 -5.93109 -3.97196 1.22836 1.40743 1.82363 3.35907 3.40218 3.43421 3.70915 4.47658 4.77105 4.81054 5.02626 5.25169 5.34378 5.43571 5.52353 5.54096 5.64459 5.71902 5.86894 6.00981 6.15044 6.22324 6.23521 6.38740 6.42659 6.47613 6.50262 6.74464 6.90744 6.96008 7.12409 7.22620 7.51986 7.81801 7.95104 8.31974 8.43415 8.79054 9.10110 9.67426 11.12210 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.019756 B = 0.005192 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.973921 B = 5391.864711 C = 6555.126899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.220 3.780 4 H 0.004 0.996 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.093 3.907 15 C -0.031 4.031 16 C -0.104 4.104 17 C -0.103 4.103 18 C -0.129 4.129 19 C -0.062 4.062 20 C -0.122 4.122 21 C -0.093 4.093 22 Br -0.051 7.051 23 H 0.042 0.958 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.040 0.960 27 H 0.100 0.900 28 H 0.259 0.741 29 H 0.321 0.679 30 H 0.085 0.915 31 H 0.036 0.964 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.563 9.254 -11.679 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.022 0.978 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.310 5.310 14 C -0.036 4.036 15 C -0.034 4.034 16 C -0.123 4.123 17 C -0.121 4.121 18 C -0.148 4.148 19 C -0.064 4.064 20 C -0.179 4.179 21 C -0.173 4.173 22 Br 0.035 6.965 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.139 0.861 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.402 8.864 -11.310 17.739 hybrid contribution 0.539 0.161 0.392 0.685 sum -9.863 9.024 -10.918 17.260 Atomic orbital electron populations 1.21893 0.99582 0.99594 0.99761 1.21773 0.91269 1.00315 1.03034 1.19165 0.95367 0.89923 0.84241 0.97847 1.21182 0.91204 1.36414 1.04356 0.92116 1.24954 0.98028 0.95680 0.95845 1.69869 1.34756 1.39389 1.09619 0.86613 0.85882 0.78080 0.77094 1.20477 1.21508 1.20350 1.60812 1.37492 1.00084 1.32590 1.20973 1.01129 0.91228 0.90298 1.20089 0.90882 0.95064 0.97346 1.21110 0.99355 0.97490 0.94376 1.21239 0.96269 0.98506 0.96098 1.20904 0.92751 1.01308 0.99809 1.19709 0.96688 0.96995 0.92981 1.20954 0.92259 1.02573 1.02092 1.21688 0.93575 1.04977 0.97019 1.96641 1.50586 1.78701 1.70553 0.93923 0.94417 0.94474 0.94117 0.88203 0.93069 0.86078 0.89644 0.94583 0.84946 0.85708 0.85744 0.90681 0.90687 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.65 37.16 0.36 -2.68 16 2 C -0.13 -3.01 5.34 -26.73 -0.14 -3.15 16 3 C 0.22 5.52 2.03 -68.86 -0.14 5.38 16 4 H 0.00 0.11 7.78 -51.93 -0.40 -0.30 16 5 C -0.49 -13.57 8.70 -34.44 -0.30 -13.87 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.53 11.29 55.43 0.63 -24.91 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.68 -14.73 6.28 -109.22 -0.69 -15.42 16 14 C 0.09 1.80 4.97 -4.97 -0.02 1.78 16 15 C -0.03 -0.52 5.41 -104.59 -0.57 -1.09 16 16 C -0.10 -1.53 9.67 -39.58 -0.38 -1.91 16 17 C -0.10 -1.25 10.05 -39.58 -0.40 -1.64 16 18 C -0.13 -1.49 9.70 -39.59 -0.38 -1.88 16 19 C -0.06 -0.80 5.88 -104.60 -0.62 -1.41 16 20 C -0.12 -1.24 9.55 36.01 0.34 -0.89 16 21 C -0.09 -1.41 6.22 -39.52 -0.25 -1.66 16 22 Br -0.05 -0.75 29.10 -68.01 -1.98 -2.73 16 23 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.70 6.63 -51.93 -0.34 0.35 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.32 6.60 5.50 -39.29 -0.22 6.39 16 30 H 0.09 1.74 7.93 -51.93 -0.41 1.33 16 31 H 0.04 0.71 7.09 -51.93 -0.37 0.34 16 32 H 0.13 1.87 8.04 -52.49 -0.42 1.44 16 33 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.78 6.65 -51.93 -0.35 0.43 16 37 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 LS Contribution 318.47 15.07 4.80 4.80 Total: -1.00 -28.68 318.47 -10.17 -38.85 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.32 Total: 4.51 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -2.59 Total: -21.59 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: -0.06 Total: -40.33 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 35 Polarization: -0.75 SS G_CDS: -1.98 Total: -2.73 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.68 -10.17 -38.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930693066.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.417 kcal (2) G-P(sol) polarization free energy of solvation -28.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds