Wall clock time and date at job start Tue Mar 31 2020 10:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47142 * 2 1 4 4 C 1.53005 * 109.47326 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47288 * 180.02562 * 4 3 2 6 6 C 1.36863 * 119.99824 * 269.99878 * 5 4 3 7 7 H 1.08000 * 120.00436 * 6.19748 * 6 5 4 8 8 C 1.38790 * 120.00216 * 186.18799 * 6 5 4 9 9 N 1.31585 * 119.99729 * 6.70109 * 8 6 5 10 10 Si 1.86792 * 120.00328 * 186.69965 * 8 6 5 11 11 H 1.48498 * 109.47525 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47285 * 120.00233 * 10 8 6 13 13 H 1.48504 * 109.47033 * 240.00365 * 10 8 6 14 14 C 1.38831 * 120.00258 * 90.00142 * 5 4 3 15 15 N 1.32246 * 120.27016 * 263.53515 * 14 5 4 16 16 N 1.28166 * 122.46974 * 179.97438 * 15 14 5 17 17 C 1.31326 * 123.04784 * 0.02562 * 16 15 14 18 18 Cl 1.73606 * 120.11230 * 179.72121 * 17 16 15 19 19 C 1.41469 * 119.77479 * 359.97438 * 17 16 15 20 20 C 1.44830 * 131.01943 * 179.97438 * 19 17 16 21 21 C 1.32126 * 114.82735 * 179.97438 * 20 19 17 22 22 S 1.75396 * 111.37612 * 0.02562 * 21 20 19 23 23 C 1.39988 * 117.06910 * 359.97438 * 19 17 16 24 24 H 1.08998 * 109.47396 * 59.99539 * 1 2 3 25 25 H 1.09001 * 109.47235 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47052 * 299.99637 * 1 2 3 27 27 H 1.08998 * 109.47175 * 240.00054 * 2 1 3 28 28 H 1.08998 * 109.47396 * 120.00461 * 2 1 3 29 29 H 1.09001 * 109.46891 * 60.00724 * 3 2 1 30 30 H 1.08993 * 109.47396 * 300.00011 * 3 2 1 31 31 H 1.08998 * 109.47054 * 60.00016 * 4 3 2 32 32 H 1.09006 * 109.47155 * 300.00289 * 4 3 2 33 33 H 0.97003 * 120.00362 * 174.99241 * 9 8 6 34 34 H 1.08011 * 122.58411 * 359.97438 * 20 19 17 35 35 H 1.08004 * 124.31213 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2869 3.4692 -1.1837 7 1 4.0137 2.9985 -2.1166 8 6 4.8697 4.7288 -1.1867 9 7 5.3225 5.2468 -0.0651 10 14 5.0112 5.6887 -2.7828 11 1 4.4306 4.8916 -3.8931 12 1 4.2733 6.9712 -2.6564 13 1 6.4418 5.9668 -3.0680 14 6 4.2892 3.4778 1.2038 15 7 3.3672 4.2752 1.7167 16 7 3.5356 4.8991 2.8235 17 6 4.6315 4.8024 3.5407 18 17 4.7812 5.6879 5.0264 19 6 5.6918 3.9782 3.0957 20 6 6.9863 3.6963 3.6806 21 6 7.7408 2.8650 2.9838 22 16 6.9289 2.3383 1.5210 23 6 5.5050 3.2970 1.8871 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6766 1.9563 -0.8899 31 1 3.9337 0.9286 -0.8891 32 1 3.9330 0.9288 0.8909 33 1 5.7945 6.0942 -0.0779 34 1 7.3101 4.1320 4.6145 35 1 8.7315 2.5506 3.2772 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:44 Heat of formation + Delta-G solvation = 80.878316 kcal Electronic energy + Delta-G solvation = -21524.367074 eV Core-core repulsion = 18289.668614 eV Total energy + Delta-G solvation = -3234.698460 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 311.055 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.98388 -36.91105 -36.02949 -35.67788 -34.34394 -31.64840 -30.28678 -29.83598 -27.90602 -24.83470 -24.30273 -23.52769 -21.65573 -20.53834 -20.27011 -18.10689 -17.66093 -16.94069 -15.58779 -15.00971 -14.73621 -14.44856 -14.18556 -13.80711 -13.67051 -13.59136 -13.51307 -12.50162 -12.21528 -11.93475 -11.73469 -11.51462 -11.29918 -11.25332 -11.01403 -10.93519 -10.90037 -10.70351 -10.66704 -10.41542 -10.23856 -10.09424 -9.92456 -9.38507 -9.01334 -8.70197 -8.44903 -7.52664 -7.26533 -6.07045 -3.60777 1.18772 1.80303 2.06860 2.29947 2.65532 2.79048 3.24765 3.30620 3.34420 4.13412 4.53036 4.63922 4.95488 5.15443 5.29088 5.31193 5.42314 5.49667 5.62393 5.75283 5.76851 5.86544 6.05628 6.11274 6.16120 6.18854 6.24657 6.31769 6.45007 6.60543 6.68120 6.76870 6.85643 6.98826 7.42511 7.88286 8.84475 9.36804 9.74882 9.91465 10.93703 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.010014 B = 0.006756 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.366906 B = 4143.607708 C = 5043.814304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.140 4.140 4 C 0.153 3.847 5 N -0.547 5.547 6 C -0.257 4.257 7 H 0.094 0.906 8 C 0.003 3.997 9 N -0.904 5.904 10 Si 0.929 3.071 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.287 1.287 14 C 0.499 3.501 15 N -0.262 5.262 16 N -0.232 5.232 17 C 0.127 3.873 18 Cl -0.048 7.048 19 C -0.089 4.089 20 C -0.109 4.109 21 C -0.215 4.215 22 S 0.157 5.843 23 C -0.109 4.109 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.268 0.732 34 H 0.141 0.859 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -8.117 5.020 9.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.028 3.972 5 N -0.266 5.266 6 C -0.384 4.384 7 H 0.112 0.888 8 C -0.195 4.195 9 N -0.548 5.548 10 Si 0.758 3.242 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.214 1.214 14 C 0.255 3.745 15 N -0.106 5.106 16 N -0.070 5.070 17 C -0.056 4.056 18 Cl -0.021 7.021 19 C -0.109 4.109 20 C -0.141 4.141 21 C -0.351 4.351 22 S 0.418 5.582 23 C -0.239 4.239 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.159 0.841 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.018 -8.125 3.735 9.000 hybrid contribution 1.296 1.463 0.634 2.055 sum 2.314 -6.662 4.369 8.296 Atomic orbital electron populations 1.21751 0.96379 1.00725 1.01835 1.21481 0.95495 0.97692 1.01304 1.22201 0.97711 0.95210 1.02870 1.20982 0.92519 0.83421 1.00283 1.41431 1.75045 1.09950 1.00204 1.19496 1.35801 0.99144 0.84007 0.88846 1.24917 0.98943 0.97530 0.98134 1.69041 1.40671 1.20323 1.24775 0.85777 0.77417 0.79773 0.81191 1.20001 1.21271 1.21408 1.18419 0.85645 0.85169 0.85242 1.73050 1.27142 1.07361 1.03035 1.72023 1.18502 1.15460 1.00984 1.22923 0.93415 0.97555 0.91743 1.98314 1.97433 1.74934 1.31386 1.19513 0.95468 1.00311 0.95560 1.20655 0.92000 1.00123 1.01355 1.25256 1.04354 1.05292 1.00200 1.83944 1.07033 1.46129 1.21075 1.24320 0.99954 1.02139 0.97492 0.92855 0.93423 0.92918 0.92330 0.92614 0.92141 0.91508 0.91577 0.93893 0.91953 0.84089 0.81834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.15 0.37 -1.46 16 2 C -0.12 -1.63 5.93 -26.74 -0.16 -1.79 16 3 C -0.14 -2.41 5.54 -26.73 -0.15 -2.56 16 4 C 0.15 2.86 5.65 -4.04 -0.02 2.84 16 5 N -0.55 -12.69 2.64 -114.70 -0.30 -12.99 16 6 C -0.26 -6.42 9.78 -15.10 -0.15 -6.57 16 7 H 0.09 2.23 7.84 -52.49 -0.41 1.81 16 8 C 0.00 0.08 5.40 -17.45 -0.09 -0.02 16 9 N -0.90 -24.72 9.83 55.49 0.55 -24.17 16 10 Si 0.93 21.21 29.56 -169.99 -5.03 16.18 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.50 12.08 3.71 -154.75 -0.57 11.51 16 15 N -0.26 -6.77 11.24 31.39 0.35 -6.41 16 16 N -0.23 -5.67 11.40 33.32 0.38 -5.29 16 17 C 0.13 2.76 7.44 -16.54 -0.12 2.64 16 18 Cl -0.05 -0.85 28.96 -51.86 -1.50 -2.35 16 19 C -0.09 -1.86 6.05 -105.41 -0.64 -2.50 16 20 C -0.11 -1.84 10.14 -38.90 -0.39 -2.23 16 21 C -0.22 -3.30 11.04 28.81 0.32 -2.98 16 22 S 0.16 2.86 23.23 -107.50 -2.50 0.37 16 23 C -0.11 -2.42 5.47 -38.02 -0.21 -2.63 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.15 8.04 -51.93 -0.42 0.73 16 32 H 0.04 0.76 8.05 -51.93 -0.42 0.34 16 33 H 0.27 7.38 8.32 -40.82 -0.34 7.04 16 34 H 0.14 1.99 8.06 -52.48 -0.42 1.57 16 35 H 0.16 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 329.61 15.07 4.97 4.97 Total: -1.00 -28.99 329.61 -9.09 -38.08 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -4.19 Total: -2.62 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -1.82 Total: -5.75 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.98 Total: -48.87 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.50 Total: 0.37 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.99 -9.09 -38.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.960 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds