Wall clock time and date at job start Tue Mar 31 2020 09:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47283 * 2 1 4 4 C 1.38290 * 119.96259 * 89.99867 * 3 2 1 5 5 C 1.38348 * 120.14203 * 180.02562 * 4 3 2 6 6 Br 1.89102 * 119.97407 * 180.02562 * 5 4 3 7 7 C 1.38215 * 120.05673 * 359.97438 * 5 4 3 8 8 C 1.38878 * 119.91182 * 0.02562 * 7 5 4 9 9 N 1.39680 * 120.06786 * 179.97438 * 8 7 5 10 10 C 1.46499 * 119.99665 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.46712 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47183 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47317 * 180.02562 * 12 11 10 14 14 H 1.08008 * 119.99766 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00273 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99845 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99689 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46644 * 90.00502 * 17 15 13 19 19 H 1.48494 * 109.47001 * 210.00057 * 17 15 13 20 20 H 1.48497 * 109.47228 * 330.00557 * 17 15 13 21 21 C 1.38097 * 119.95446 * 270.02319 * 3 2 1 22 22 H 1.09007 * 109.47048 * 60.00020 * 1 2 3 23 23 H 1.08997 * 109.47629 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47181 * 300.00281 * 1 2 3 25 25 H 1.08998 * 109.47181 * 239.99719 * 2 1 3 26 26 H 1.09002 * 109.46607 * 119.99824 * 2 1 3 27 27 H 1.07998 * 119.92821 * 0.02562 * 4 3 2 28 28 H 1.08000 * 120.04903 * 179.72494 * 7 5 4 29 29 H 0.96999 * 119.99707 * 179.97438 * 9 8 7 30 30 H 1.09002 * 109.47440 * 299.99577 * 10 9 8 31 31 H 1.08999 * 109.47435 * 60.00313 * 10 9 8 32 32 H 1.09005 * 109.47171 * 299.99778 * 11 10 9 33 33 H 1.09001 * 109.47573 * 59.99983 * 11 10 9 34 34 H 1.09005 * 109.46861 * 299.99937 * 12 11 10 35 35 H 1.08990 * 109.47371 * 59.99684 * 12 11 10 36 36 H 0.97007 * 119.99794 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.02274 * 359.97266 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2626 2.0719 1.1981 5 6 2.7233 3.3765 1.2024 6 35 3.0372 4.2621 2.8435 7 6 2.9553 4.0326 0.0083 8 6 2.7249 3.3809 -1.1962 9 7 2.9578 4.0411 -2.4049 10 6 3.4462 5.4223 -2.4028 11 6 3.6157 5.9054 -3.8446 12 6 4.1263 7.3477 -3.8425 13 6 4.2927 7.8238 -5.2625 14 1 4.0581 7.1635 -6.0845 15 6 4.7454 9.1019 -5.5126 16 7 4.8910 9.5172 -6.7520 17 14 5.1518 10.2436 -4.0911 18 1 6.5792 10.0784 -3.7162 19 1 4.9071 11.6499 -4.5002 20 1 4.2924 9.9099 -2.9269 21 6 2.2618 2.0710 -1.1965 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0824 1.5610 2.1323 28 1 3.3107 5.0525 0.0118 29 1 2.7969 3.5848 -3.2456 30 1 2.7282 6.0608 -1.8881 31 1 4.4063 5.4674 -1.8889 32 1 4.3335 5.2670 -4.3597 33 1 2.6553 5.8604 -4.3582 34 1 3.4088 7.9864 -3.3272 35 1 5.0867 7.3924 -3.3291 36 1 5.2092 10.4165 -6.9279 37 1 2.0817 1.5616 -2.1316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433564.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:11 Heat of formation + Delta-G solvation = -0.478528 kcal Electronic energy + Delta-G solvation = -16979.995941 eV Core-core repulsion = 14188.129370 eV Total energy + Delta-G solvation = -2791.866570 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.76743 -36.61370 -34.36612 -33.61281 -32.07276 -30.90865 -29.10420 -28.96533 -26.58105 -24.31349 -22.75737 -22.16209 -20.38157 -20.25058 -17.06831 -16.80280 -16.27267 -15.67796 -15.05269 -14.58909 -14.45787 -14.07984 -13.76600 -13.55299 -13.48117 -12.77802 -12.70482 -12.29653 -12.10001 -11.94543 -11.71415 -11.22639 -11.20393 -11.12847 -10.91578 -10.82669 -10.35362 -10.13142 -9.94840 -9.75376 -9.68173 -9.27200 -8.72872 -8.59283 -7.43213 -6.09696 -4.08727 1.10086 1.45177 1.56496 3.27753 3.35573 3.38486 3.50574 3.62851 4.40648 4.50844 4.80674 5.04251 5.11833 5.14617 5.21848 5.24101 5.31517 5.36714 5.52351 5.54727 5.60751 5.67296 5.80047 5.90488 5.96398 6.12244 6.21760 6.35539 6.37442 6.46240 6.65753 6.72078 7.16814 7.30802 7.32610 7.71918 7.77267 8.46779 8.94122 9.52232 11.03624 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.015779 B = 0.003249 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.035977 B = 8615.568589 C =10274.384368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.031 4.031 4 C -0.159 4.159 5 C -0.034 4.034 6 Br -0.061 7.061 7 C -0.179 4.179 8 C 0.233 3.767 9 N -0.738 5.738 10 C 0.116 3.884 11 C -0.112 4.112 12 C -0.010 4.010 13 C -0.523 4.523 14 H 0.071 0.929 15 C 0.067 3.933 16 N -0.903 5.903 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.186 4.186 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.124 0.876 28 H 0.132 0.868 29 H 0.402 0.598 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.018 0.982 35 H 0.014 0.986 36 H 0.264 0.736 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.879 -18.170 19.472 27.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.032 4.032 4 C -0.181 4.181 5 C -0.114 4.114 6 Br 0.025 6.975 7 C -0.204 4.204 8 C 0.126 3.874 9 N -0.365 5.365 10 C -0.008 4.008 11 C -0.150 4.150 12 C -0.048 4.048 13 C -0.561 4.561 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.541 5.541 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.209 4.209 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.142 0.858 28 H 0.150 0.850 29 H 0.236 0.764 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.629 -17.444 19.975 27.336 hybrid contribution 0.200 0.479 -0.112 0.530 sum -6.429 -16.966 19.863 26.902 Atomic orbital electron populations 1.21743 0.94560 1.01653 1.02443 1.20543 0.96281 0.92340 1.02941 1.19524 0.96106 0.95603 0.92003 1.20597 1.05945 0.93461 0.98104 1.21401 1.03700 0.95505 0.90816 1.96685 1.95246 1.78454 1.27124 1.20567 1.08830 1.01240 0.89728 1.17752 0.92095 0.91023 0.86508 1.44991 1.72157 1.14620 1.04738 1.21682 0.98285 0.80737 1.00069 1.21666 1.01508 0.99418 0.92425 1.19497 0.95818 0.91237 0.98260 1.21092 1.44678 0.99144 0.91212 0.91038 1.25034 0.94893 0.98017 0.95525 1.69913 1.46827 1.18527 1.18861 0.86770 0.79210 0.80086 0.83200 1.20222 1.21319 1.18935 1.20556 1.08169 0.93961 0.98256 0.92409 0.92421 0.92463 0.90858 0.90903 0.85808 0.85047 0.76355 0.92399 0.92396 0.92125 0.92095 0.96368 0.96800 0.92653 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.08 -0.64 6.06 -27.88 -0.17 -0.81 16 3 C -0.03 -0.32 5.13 -104.66 -0.54 -0.85 16 4 C -0.16 -1.76 9.44 -39.52 -0.37 -2.13 16 5 C -0.03 -0.42 6.22 -39.55 -0.25 -0.67 16 6 Br -0.06 -0.69 33.70 -68.01 -2.29 -2.98 16 7 C -0.18 -2.39 9.05 -39.35 -0.36 -2.74 16 8 C 0.23 3.02 6.65 -83.79 -0.56 2.46 16 9 N -0.74 -9.74 5.73 -58.63 -0.34 -10.08 16 10 C 0.12 1.76 4.91 -4.04 -0.02 1.74 16 11 C -0.11 -2.05 5.27 -26.73 -0.14 -2.19 16 12 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 13 C -0.52 -14.65 9.66 -34.44 -0.33 -14.98 16 14 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 16 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 17 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 21 C -0.19 -2.09 9.55 -39.38 -0.38 -2.46 16 22 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.07 0.49 8.08 -51.93 -0.42 0.08 16 27 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.13 1.79 6.73 -52.49 -0.35 1.43 16 29 H 0.40 4.73 8.49 -40.82 -0.35 4.38 16 30 H 0.06 0.89 7.94 -51.93 -0.41 0.47 16 31 H 0.06 0.88 7.95 -51.93 -0.41 0.47 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 35 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 328.13 15.07 4.94 4.94 Total: -1.00 -29.76 328.13 -10.21 -39.97 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.68 Total: 0.04 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -2.95 Total: -21.83 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.44 Total: -36.95 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -2.29 Total: -2.98 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.76 -10.21 -39.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433564.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.492 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds