Wall clock time and date at job start Tue Mar 31 2020 09:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47283 * 2 1 4 4 C 1.38290 * 119.96259 * 89.99867 * 3 2 1 5 5 C 1.38348 * 120.14203 * 180.02562 * 4 3 2 6 6 Br 1.89102 * 119.97407 * 180.02562 * 5 4 3 7 7 C 1.38215 * 120.05673 * 359.97438 * 5 4 3 8 8 C 1.38878 * 119.91182 * 0.02562 * 7 5 4 9 9 N 1.39680 * 120.06786 * 179.97438 * 8 7 5 10 10 C 1.46499 * 119.99665 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.46712 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47183 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47317 * 180.02562 * 12 11 10 14 14 H 1.08008 * 119.99766 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00273 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99845 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99689 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46644 * 90.00502 * 17 15 13 19 19 H 1.48494 * 109.47001 * 210.00057 * 17 15 13 20 20 H 1.48497 * 109.47228 * 330.00557 * 17 15 13 21 21 C 1.38097 * 119.95446 * 270.02319 * 3 2 1 22 22 H 1.09007 * 109.47048 * 60.00020 * 1 2 3 23 23 H 1.08997 * 109.47629 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47181 * 300.00281 * 1 2 3 25 25 H 1.08998 * 109.47181 * 239.99719 * 2 1 3 26 26 H 1.09002 * 109.46607 * 119.99824 * 2 1 3 27 27 H 1.07998 * 119.92821 * 0.02562 * 4 3 2 28 28 H 1.08000 * 120.04903 * 179.72494 * 7 5 4 29 29 H 0.96999 * 119.99707 * 179.97438 * 9 8 7 30 30 H 1.09002 * 109.47440 * 299.99577 * 10 9 8 31 31 H 1.08999 * 109.47435 * 60.00313 * 10 9 8 32 32 H 1.09005 * 109.47171 * 299.99778 * 11 10 9 33 33 H 1.09001 * 109.47573 * 59.99983 * 11 10 9 34 34 H 1.09005 * 109.46861 * 299.99937 * 12 11 10 35 35 H 1.08990 * 109.47371 * 59.99684 * 12 11 10 36 36 H 0.97007 * 119.99794 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.02274 * 359.97266 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2626 2.0719 1.1981 5 6 2.7233 3.3765 1.2024 6 35 3.0372 4.2621 2.8435 7 6 2.9553 4.0326 0.0083 8 6 2.7249 3.3809 -1.1962 9 7 2.9578 4.0411 -2.4049 10 6 3.4462 5.4223 -2.4028 11 6 3.6157 5.9054 -3.8446 12 6 4.1263 7.3477 -3.8425 13 6 4.2927 7.8238 -5.2625 14 1 4.0581 7.1635 -6.0845 15 6 4.7454 9.1019 -5.5126 16 7 4.8910 9.5172 -6.7520 17 14 5.1518 10.2436 -4.0911 18 1 6.5792 10.0784 -3.7162 19 1 4.9071 11.6499 -4.5002 20 1 4.2924 9.9099 -2.9269 21 6 2.2618 2.0710 -1.1965 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0824 1.5610 2.1323 28 1 3.3107 5.0525 0.0118 29 1 2.7969 3.5848 -3.2456 30 1 2.7282 6.0608 -1.8881 31 1 4.4063 5.4674 -1.8889 32 1 4.3335 5.2670 -4.3597 33 1 2.6553 5.8604 -4.3582 34 1 3.4088 7.9864 -3.3272 35 1 5.0867 7.3924 -3.3291 36 1 5.2092 10.4165 -6.9279 37 1 2.0817 1.5616 -2.1316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168433564.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:11 Heat of formation + Delta-G solvation = -16.163778 kcal Electronic energy + Delta-G solvation = -16980.676104 eV Core-core repulsion = 14188.129370 eV Total energy + Delta-G solvation = -2792.546734 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.66630 -37.74006 -35.68621 -34.81628 -33.74163 -31.99177 -30.19300 -29.88779 -28.07842 -25.26615 -24.12752 -23.09631 -21.94269 -21.19933 -18.96203 -17.91184 -17.28827 -16.68741 -16.39695 -16.24183 -15.29195 -15.24639 -14.77101 -14.71215 -14.45384 -14.26422 -13.89082 -13.77196 -13.28584 -12.91303 -12.79500 -12.59752 -12.50049 -12.09341 -11.88452 -11.79382 -11.73025 -11.63674 -11.54069 -11.33971 -11.22926 -10.77826 -10.68518 -9.60595 -8.41319 -8.30872 -6.35408 0.20460 0.55375 0.66276 1.36397 1.38032 1.49739 2.35371 2.45881 2.73530 3.04959 3.75278 4.05371 4.17979 4.19365 4.19418 4.31035 4.41782 4.45575 4.55035 4.57548 4.68827 4.84688 4.88543 4.95752 5.01665 5.11984 5.13490 5.23239 5.32273 5.42417 5.44019 5.54502 5.62492 5.65056 5.78366 6.23872 6.31870 6.72996 6.80617 7.29574 8.85887 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.015779 B = 0.003249 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.035977 B = 8615.568589 C =10274.384368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.029 4.029 4 C -0.159 4.159 5 C -0.046 4.046 6 Br -0.056 7.056 7 C -0.197 4.197 8 C 0.219 3.781 9 N -0.739 5.739 10 C 0.132 3.868 11 C -0.101 4.101 12 C -0.010 4.010 13 C -0.534 4.534 14 H 0.033 0.967 15 C 0.003 3.997 16 N -0.952 5.952 17 Si 0.950 3.050 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.244 1.244 21 C -0.186 4.186 22 H 0.050 0.950 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.139 0.861 28 H 0.123 0.877 29 H 0.408 0.592 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.023 0.977 35 H 0.022 0.978 36 H 0.266 0.734 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.263 -19.419 21.706 30.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.031 4.031 4 C -0.181 4.181 5 C -0.126 4.126 6 Br 0.029 6.971 7 C -0.222 4.222 8 C 0.113 3.887 9 N -0.368 5.368 10 C 0.007 3.993 11 C -0.139 4.139 12 C -0.048 4.048 13 C -0.572 4.572 14 H 0.051 0.949 15 C -0.194 4.194 16 N -0.593 5.593 17 Si 0.773 3.227 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.167 1.167 21 C -0.209 4.209 22 H 0.069 0.931 23 H 0.092 0.908 24 H 0.071 0.929 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.157 0.843 28 H 0.141 0.859 29 H 0.244 0.756 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.026 -18.729 22.228 29.904 hybrid contribution 0.279 0.757 -0.843 1.167 sum -6.747 -17.972 21.385 28.737 Atomic orbital electron populations 1.21733 0.94062 1.02557 1.01898 1.20612 0.96565 0.90618 1.04122 1.19869 0.95023 0.96826 0.91375 1.20875 1.05009 0.93019 0.99155 1.21549 1.04102 0.96137 0.90807 1.96677 1.95261 1.78552 1.26586 1.20603 1.09936 1.01209 0.90428 1.17887 0.92973 0.91764 0.86057 1.44774 1.72774 1.13855 1.05352 1.21329 0.98557 0.81967 0.97416 1.21443 1.00961 0.96806 0.94702 1.19448 0.96506 0.93935 0.94877 1.21490 1.43950 0.98803 0.92943 0.94895 1.26036 0.94857 1.00048 0.98439 1.70070 1.48472 1.19269 1.21482 0.85655 0.79664 0.77405 0.79940 1.19150 1.21108 1.16731 1.20804 1.07341 0.93336 0.99440 0.93087 0.90839 0.92890 0.89818 0.89650 0.84278 0.85868 0.75638 0.92379 0.92289 0.92411 0.92429 0.95880 0.95988 0.92485 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.89 71.98 0.71 -0.97 16 2 C -0.08 -1.01 6.06 29.85 0.18 -0.83 16 3 C -0.03 -0.54 5.13 -19.89 -0.10 -0.64 16 4 C -0.16 -3.17 9.44 22.31 0.21 -2.96 16 5 C -0.05 -1.07 6.22 22.29 0.14 -0.93 16 6 Br -0.06 -1.21 33.70 -20.37 -0.69 -1.90 16 7 C -0.20 -5.05 9.05 22.42 0.20 -4.85 16 8 C 0.22 5.37 6.65 38.21 0.25 5.63 16 9 N -0.74 -18.60 5.73 -339.42 -1.95 -20.55 16 10 C 0.13 3.85 4.91 86.38 0.42 4.27 16 11 C -0.10 -3.64 5.27 30.60 0.16 -3.48 16 12 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 13 C -0.53 -30.42 9.66 25.60 0.25 -30.17 16 14 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 15 C 0.00 0.17 5.47 84.66 0.46 0.63 16 16 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 17 Si 0.95 43.89 27.47 68.60 1.88 45.78 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 21 C -0.19 -3.80 9.55 22.40 0.21 -3.59 16 22 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 23 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.08 0.89 8.08 -2.39 -0.02 0.88 16 26 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 27 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 28 H 0.12 3.28 6.73 -2.91 -0.02 3.26 16 29 H 0.41 9.10 8.49 -92.71 -0.79 8.32 16 30 H 0.06 1.70 7.94 -2.39 -0.02 1.68 16 31 H 0.06 1.72 7.95 -2.39 -0.02 1.70 16 32 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.02 1.02 7.20 -2.38 -0.02 1.00 16 35 H 0.02 0.95 7.57 -2.39 -0.02 0.94 16 36 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 37 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -64.38 328.13 2.99 -61.39 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.21 Total: 12.95 kcal Atomic # 6 Polarization: -41.45 SS G_CDS: 3.23 Total: -38.22 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -1.65 Total: -80.00 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.78 kcal Atomic # 35 Polarization: -1.21 SS G_CDS: -0.69 Total: -1.90 kcal Total: -64.38 2.99 -61.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433564.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.226 kcal (2) G-P(sol) polarization free energy of solvation -64.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds