Wall clock time and date at job start Tue Mar 31 2020 09:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86804 * 119.99988 * 2 1 4 4 H 1.48495 * 109.47404 * 239.99650 * 3 2 1 5 5 H 1.48493 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.46907 * 119.99859 * 3 2 1 7 7 C 1.39924 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00116 * 197.62680 * 7 2 1 9 9 C 1.41411 * 120.00297 * 17.62084 * 7 2 1 10 10 C 1.40795 * 120.20128 * 25.23893 * 9 7 2 11 11 C 1.37649 * 119.89699 * 180.02562 * 10 9 7 12 12 C 1.38511 * 120.32909 * 359.71902 * 11 10 9 13 13 C 1.39322 * 120.42118 * 0.55331 * 12 11 10 14 14 N 1.39677 * 119.95497 * 179.71782 * 13 12 11 15 15 C 1.40153 * 119.99598 * 180.56520 * 14 13 12 16 16 C 1.39021 * 120.05735 * 270.44336 * 15 14 13 17 17 F 1.35098 * 120.00699 * 0.02562 * 16 15 14 18 18 C 1.38311 * 119.97604 * 179.79190 * 16 15 14 19 19 C 1.38457 * 120.07997 * 0.46850 * 18 16 15 20 20 F 1.35100 * 119.94687 * 179.76452 * 19 18 16 21 21 C 1.38608 * 120.10707 * 359.78895 * 19 18 16 22 22 F 1.35104 * 119.98508 * 179.97438 * 21 19 18 23 23 C 1.38509 * 120.02655 * 359.97438 * 21 19 18 24 24 F 1.35100 * 120.03875 * 179.97438 * 23 21 19 25 25 C 1.38348 * 120.08627 * 359.45338 * 13 12 11 26 26 H 0.96999 * 120.00447 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.05250 * 359.97438 * 10 9 7 28 28 H 1.08007 * 119.83391 * 179.97438 * 11 10 9 29 29 H 1.08004 * 119.79229 * 180.30161 * 12 11 10 30 30 H 0.97000 * 119.99986 * 0.29868 * 14 13 12 31 31 H 1.08003 * 119.95642 * 180.20889 * 18 16 15 32 32 H 1.08003 * 120.16169 * 180.25309 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0961 1.6965 -1.2124 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2126 7 6 2.0079 -1.2118 0.0005 8 1 3.0498 -1.2336 0.2838 9 6 1.3507 -2.4079 -0.3696 10 6 0.2266 -2.3656 -1.2164 11 6 -0.4086 -3.5337 -1.5724 12 6 0.0558 -4.7525 -1.1062 13 6 1.1635 -4.8097 -0.2631 14 7 1.6200 -6.0436 0.2060 15 6 2.7270 -6.1011 1.0637 16 6 4.0096 -6.2111 0.5388 17 9 4.1900 -6.2620 -0.7991 18 6 5.1011 -6.2634 1.3866 19 6 4.9174 -6.2162 2.7582 20 9 5.9851 -6.2723 3.5840 21 6 3.6397 -6.1120 3.2853 22 9 3.4632 -6.0666 4.6240 23 6 2.5438 -6.0543 2.4402 24 9 1.2983 -5.9532 2.9538 25 6 1.8151 -3.6463 0.1057 26 1 -0.4851 0.8400 -0.0004 27 1 -0.1371 -1.4180 -1.5855 28 1 -1.2710 -3.5000 -2.2217 29 1 -0.4463 -5.6641 -1.3949 30 1 1.1686 -6.8603 -0.0588 31 1 6.0976 -6.3454 0.9784 32 1 2.6764 -3.6895 0.7560 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176351823.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:54 Heat of formation + Delta-G solvation = -123.287240 kcal Electronic energy + Delta-G solvation = -24980.743537 eV Core-core repulsion = 20599.261976 eV Total energy + Delta-G solvation = -4381.481560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.84671 -49.25662 -49.07135 -48.49794 -39.22611 -37.59038 -35.07779 -33.27057 -30.49240 -30.00158 -29.52362 -27.21832 -25.29470 -23.54070 -23.07554 -20.94472 -20.54239 -18.78679 -18.56621 -17.92882 -17.69575 -16.88554 -16.44200 -16.25236 -15.83549 -15.60546 -15.54275 -15.37586 -14.92337 -14.82393 -14.77786 -14.49223 -14.41290 -13.24548 -13.02499 -12.99750 -12.67675 -12.33239 -12.08008 -11.78279 -11.50961 -11.38912 -11.13679 -10.76476 -10.54536 -9.95984 -9.53968 -9.45788 -9.08318 -9.01545 -8.81991 -7.50661 -6.79506 -6.57833 -4.39852 0.39820 0.45516 2.71655 2.79426 3.02633 3.05994 3.08150 3.09840 3.23966 3.57213 3.72540 3.91886 3.93695 4.12737 4.31336 4.62992 4.94562 5.17039 5.36725 5.47257 5.64206 5.73118 6.20164 6.26336 6.37861 6.81078 6.90252 7.02146 7.07164 7.24085 7.65512 7.76290 7.99248 8.07827 8.18009 8.39884 8.64853 8.89505 8.96865 10.17536 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.013441 B = 0.004825 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.687323 B = 5802.079770 C = 6552.001138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.079 3.921 3 Si 0.906 3.094 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.141 3.859 10 C -0.189 4.189 11 C -0.074 4.074 12 C -0.287 4.287 13 C 0.212 3.788 14 N -0.707 5.707 15 C 0.124 3.876 16 C 0.153 3.847 17 F -0.106 7.106 18 C -0.173 4.173 19 C 0.123 3.877 20 F -0.113 7.113 21 C 0.024 3.976 22 F -0.114 7.114 23 C 0.127 3.873 24 F -0.100 7.100 25 C -0.278 4.278 26 H 0.281 0.719 27 H 0.116 0.884 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.405 0.595 31 H 0.167 0.833 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.107 -10.904 2.689 13.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.137 3.863 10 C -0.209 4.209 11 C -0.094 4.094 12 C -0.309 4.309 13 C 0.118 3.882 14 N -0.341 5.341 15 C 0.027 3.973 16 C 0.131 3.869 17 F -0.084 7.084 18 C -0.193 4.193 19 C 0.102 3.898 20 F -0.092 7.092 21 C 0.002 3.998 22 F -0.093 7.093 23 C 0.104 3.896 24 F -0.078 7.078 25 C -0.301 4.301 26 H 0.092 0.908 27 H 0.134 0.866 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.243 0.757 31 H 0.184 0.816 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.962 -10.644 2.812 13.026 hybrid contribution 0.109 0.517 0.328 0.621 sum 7.071 -10.128 3.139 12.744 Atomic orbital electron populations 1.69830 1.07570 1.29345 1.34664 1.25891 0.94705 1.01244 0.92147 0.86397 0.80217 0.80283 0.80026 1.18756 1.20276 1.18993 1.19522 0.98000 0.91206 1.40504 0.90586 1.17334 0.90367 0.91220 0.87332 1.21229 1.00229 0.96797 1.02681 1.20427 0.97838 0.92591 0.98496 1.19758 1.02680 0.96909 1.11598 1.17451 0.93754 0.82920 0.94106 1.41624 1.31629 1.07800 1.53019 1.17110 0.88486 1.03922 0.87795 1.17454 0.91943 0.99082 0.78455 1.91592 1.95694 1.92790 1.28353 1.20868 1.00856 1.07047 0.90525 1.16758 0.81782 1.03527 0.87687 1.91578 1.53001 1.93492 1.71104 1.17382 0.92009 1.11772 0.78611 1.91569 1.95839 1.94173 1.27678 1.17607 0.79720 1.01636 0.90632 1.91605 1.36950 1.92604 1.86623 1.20418 1.06259 0.91728 1.11688 0.90784 0.86569 0.89124 0.89343 0.75714 0.81560 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.38 10.99 55.55 0.61 -19.77 16 2 C 0.08 1.97 5.14 -17.35 -0.09 1.88 16 3 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.46 -12.30 9.05 -37.74 -0.34 -12.64 16 8 H 0.08 1.95 7.90 -52.49 -0.41 1.53 16 9 C 0.14 3.75 5.56 -106.85 -0.59 3.15 16 10 C -0.19 -4.89 8.69 -38.83 -0.34 -5.23 16 11 C -0.07 -1.72 10.01 -39.70 -0.40 -2.12 16 12 C -0.29 -6.25 9.90 -39.08 -0.39 -6.64 16 13 C 0.21 4.61 6.63 -83.84 -0.56 4.05 16 14 N -0.71 -12.25 5.09 -8.32 -0.04 -12.29 16 15 C 0.12 1.95 4.33 -83.50 -0.36 1.59 16 16 C 0.15 2.12 7.31 -39.26 -0.29 1.83 16 17 F -0.11 -1.59 17.07 2.25 0.04 -1.55 16 18 C -0.17 -1.94 9.99 -39.47 -0.39 -2.34 16 19 C 0.12 1.51 7.30 -39.36 -0.29 1.22 16 20 F -0.11 -1.36 17.18 2.25 0.04 -1.32 16 21 C 0.02 0.34 7.31 -39.34 -0.29 0.05 16 22 F -0.11 -1.68 17.09 2.25 0.04 -1.64 16 23 C 0.13 1.98 7.31 -39.22 -0.29 1.70 16 24 F -0.10 -1.74 16.99 2.25 0.04 -1.70 16 25 C -0.28 -6.78 9.05 -38.67 -0.35 -7.13 16 26 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 27 H 0.12 3.09 6.20 -52.49 -0.33 2.77 16 28 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 29 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 30 H 0.41 5.92 8.83 -40.82 -0.36 5.56 16 31 H 0.17 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.09 2.05 6.97 -52.48 -0.37 1.69 16 LS Contribution 305.29 15.07 4.60 4.60 Total: -1.00 -27.74 305.29 -6.53 -34.28 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -1.87 Total: 6.38 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -4.96 Total: -20.61 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.57 Total: -32.06 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.15 Total: -6.20 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.74 -6.53 -34.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176351823.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.008 kcal (2) G-P(sol) polarization free energy of solvation -27.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds