Wall clock time and date at job start Tue Mar 31 2020 09:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21242 * 120.00399 * 2 1 4 4 C 1.47216 * 119.99523 * 180.02562 * 2 1 3 5 5 C 1.39884 * 120.04723 * 179.97438 * 4 2 1 6 6 C 1.38714 * 120.09660 * 180.02562 * 5 4 2 7 7 N 1.39760 * 119.90406 * 179.70504 * 6 5 4 8 8 S 1.65604 * 119.99905 * 75.18886 * 7 6 5 9 9 O 1.42098 * 106.40162 * 177.78114 * 8 7 6 10 10 O 1.42098 * 106.40516 * 310.70176 * 8 7 6 11 11 C 1.76199 * 107.21566 * 64.24269 * 8 7 6 12 12 H 1.08002 * 120.00087 * 4.87886 * 11 8 7 13 13 C 1.37884 * 120.00130 * 184.87727 * 11 8 7 14 14 N 1.31507 * 119.99836 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99923 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47245 * 60.00193 * 15 13 11 17 17 H 1.48501 * 109.46798 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47082 * 299.99772 * 15 13 11 19 19 C 1.38716 * 120.19951 * 359.97438 * 6 5 4 20 20 C 1.39882 * 120.09540 * 0.02562 * 19 6 5 21 21 C 1.47217 * 120.05130 * 180.02562 * 20 19 6 22 22 C 1.50698 * 120.00398 * 179.97438 * 21 20 19 23 23 O 1.21256 * 119.99415 * 0.02562 * 21 20 19 24 24 C 1.39540 * 120.05061 * 359.97438 * 4 2 1 25 25 H 1.09002 * 109.47228 * 269.99933 * 1 2 3 26 26 H 1.09000 * 109.47071 * 29.99124 * 1 2 3 27 27 H 1.08994 * 109.47681 * 149.99363 * 1 2 3 28 28 H 1.08000 * 119.95502 * 359.97438 * 5 4 2 29 29 H 0.96995 * 120.00285 * 255.19500 * 7 6 5 30 30 H 0.96999 * 120.00156 * 179.97438 * 14 13 11 31 31 H 1.07998 * 119.95344 * 179.97438 * 19 6 5 32 32 H 1.09000 * 109.46599 * 59.99962 * 22 21 20 33 33 H 1.08994 * 109.47310 * 179.97438 * 22 21 20 34 34 H 1.09001 * 109.46879 * 300.00296 * 22 21 20 35 35 H 1.07996 * 120.09985 * 0.04519 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0499 0.0000 4 6 2.2430 -1.2750 -0.0006 5 6 3.6418 -1.2763 -0.0011 6 6 4.3363 -2.4770 -0.0022 7 7 5.7339 -2.4736 -0.0090 8 16 6.5677 -2.1023 1.3728 9 8 7.9468 -2.2358 1.0574 10 8 5.9980 -0.9012 1.8748 11 6 6.2038 -3.3575 2.5547 12 1 5.6035 -4.2091 2.2705 13 6 6.6856 -3.2525 3.8423 14 7 7.4170 -2.2158 4.1883 15 14 6.3004 -4.5836 5.0951 16 1 6.8357 -5.8835 4.6166 17 1 6.9303 -4.2376 6.3945 18 1 4.8295 -4.6882 5.2697 19 6 3.6479 -3.6813 -0.0022 20 6 2.2491 -3.6896 -0.0017 21 6 1.5194 -4.9682 -0.0011 22 6 0.0125 -4.9759 0.0001 23 8 2.1311 -6.0152 -0.0006 24 6 1.5463 -2.4840 -0.0006 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8901 -0.5137 27 1 -0.3634 -0.8898 -0.5139 28 1 4.1819 -0.3410 -0.0015 29 1 6.2155 -2.6886 -0.8230 30 1 7.7556 -2.1418 5.0942 31 1 4.1926 -4.6138 -0.0034 32 1 -0.3541 -4.4639 -0.8896 33 1 -0.3456 -6.0053 -0.0001 34 1 -0.3528 -4.4638 0.8903 35 1 0.4663 -2.4867 -0.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192982102.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:23 Heat of formation + Delta-G solvation = -171.742216 kcal Electronic energy + Delta-G solvation = -23456.211585 eV Core-core repulsion = 19737.556762 eV Total energy + Delta-G solvation = -3718.654824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45171 -40.27137 -39.18336 -37.53877 -36.31006 -36.09872 -35.24258 -32.94461 -31.89923 -30.56500 -29.14020 -28.35215 -24.93832 -24.62762 -21.86442 -21.13293 -20.17856 -19.47592 -18.68549 -18.35554 -17.48340 -17.17944 -16.97555 -16.55158 -16.39024 -16.10616 -15.95614 -15.81663 -15.71638 -15.61701 -14.91587 -14.06978 -13.81905 -13.47102 -13.37703 -13.25569 -13.06803 -12.94745 -12.90587 -12.88566 -12.76512 -12.68018 -12.63076 -12.51817 -12.36954 -11.42393 -11.30275 -10.98418 -10.94708 -10.60870 -10.20578 -9.90759 -8.83499 -7.57942 -0.61860 -0.34443 0.17820 1.04428 1.28486 1.30985 1.44346 1.62814 2.13941 2.50536 2.62620 2.66867 3.01338 3.07538 3.53561 3.77544 3.88758 3.94874 4.01576 4.22501 4.29930 4.42082 4.44329 4.66832 4.73360 4.79532 4.84941 4.94181 4.99972 5.03365 5.19357 5.21032 5.35632 5.40021 5.57149 5.80046 6.16757 6.54904 6.55660 6.69347 8.13647 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.005735 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.259640 B = 4880.933867 C = 5992.825877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.394 3.606 3 O -0.507 6.507 4 C -0.187 4.187 5 C -0.049 4.049 6 C 0.110 3.890 7 N -1.073 6.073 8 S 2.709 3.291 9 O -1.037 7.037 10 O -1.027 7.027 11 C -1.035 5.035 12 H 0.117 0.883 13 C 0.073 3.927 14 N -0.890 5.890 15 Si 0.987 3.013 16 H -0.252 1.252 17 H -0.259 1.259 18 H -0.248 1.248 19 C -0.041 4.041 20 C -0.184 4.184 21 C 0.400 3.600 22 C -0.194 4.194 23 O -0.503 6.503 24 C 0.008 3.992 25 H 0.121 0.879 26 H 0.094 0.906 27 H 0.130 0.870 28 H 0.115 0.885 29 H 0.425 0.575 30 H 0.301 0.699 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.373 -4.083 -8.488 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.275 3.725 3 O -0.386 6.386 4 C -0.188 4.188 5 C -0.070 4.070 6 C 0.015 3.985 7 N -0.827 5.827 8 S 2.812 3.188 9 O -1.028 7.028 10 O -1.017 7.017 11 C -1.169 5.169 12 H 0.135 0.865 13 C -0.141 4.141 14 N -0.521 5.521 15 Si 0.805 3.195 16 H -0.175 1.175 17 H -0.182 1.182 18 H -0.172 1.172 19 C -0.063 4.063 20 C -0.186 4.186 21 C 0.281 3.719 22 C -0.250 4.250 23 O -0.381 6.381 24 C -0.010 4.010 25 H 0.139 0.861 26 H 0.113 0.887 27 H 0.148 0.852 28 H 0.133 0.867 29 H 0.263 0.737 30 H 0.111 0.889 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.105 0.895 34 H 0.144 0.856 35 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -21.097 -3.128 -8.147 22.831 hybrid contribution 1.293 -0.742 0.432 1.552 sum -19.805 -3.870 -7.715 21.604 Atomic orbital electron populations 1.22336 0.87959 1.07372 1.06955 1.23350 0.94306 0.85801 0.69019 1.90576 1.73731 1.35723 1.38556 1.20726 0.92471 0.97371 1.08279 1.22103 0.95572 0.97704 0.91612 1.17215 0.82748 0.93146 1.05394 1.53199 1.12107 1.88538 1.28818 1.00406 0.71333 0.74936 0.72112 1.93330 1.35541 1.88731 1.85181 1.93333 1.79172 1.49534 1.79616 1.30707 1.47698 1.26751 1.11723 0.86453 1.25995 0.89536 0.98115 1.00405 1.69976 1.29313 1.29510 1.23298 0.85208 0.80455 0.77705 0.76167 1.17524 1.18248 1.17193 1.22079 0.95231 0.97497 0.91457 1.20726 0.92745 0.97044 1.08090 1.23206 0.94087 0.85602 0.69052 1.22367 0.88348 1.06619 1.07649 1.90569 1.73309 1.35735 1.38473 1.22238 1.02668 0.87594 0.88458 0.86069 0.88678 0.85179 0.86659 0.73722 0.88881 0.84703 0.84910 0.89524 0.85627 0.77312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 9.75 71.24 0.69 -0.96 16 2 C 0.39 9.25 7.23 28.05 0.20 9.45 16 3 O -0.51 -17.58 17.08 -2.91 -0.05 -17.63 16 4 C -0.19 -4.82 5.86 -20.21 -0.12 -4.94 16 5 C -0.05 -1.78 8.82 22.78 0.20 -1.58 16 6 C 0.11 4.14 5.79 38.10 0.22 4.36 16 7 N -1.07 -45.39 5.69 -51.56 -0.29 -45.69 16 8 S 2.71 151.33 5.02 -56.49 -0.28 151.05 16 9 O -1.04 -63.66 18.02 -128.00 -2.31 -65.97 16 10 O -1.03 -63.38 16.94 -128.00 -2.17 -65.55 16 11 C -1.03 -58.49 9.66 67.74 0.65 -57.84 16 12 H 0.12 6.05 7.81 -2.91 -0.02 6.03 16 13 C 0.07 4.14 5.46 84.66 0.46 4.60 16 14 N -0.89 -53.91 13.10 21.45 0.28 -53.63 16 15 Si 0.99 42.06 29.54 68.60 2.03 44.09 16 16 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 17 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 18 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 19 C -0.04 -1.33 9.51 22.78 0.22 -1.12 16 20 C -0.18 -4.25 5.86 -20.20 -0.12 -4.37 16 21 C 0.40 7.95 7.23 28.05 0.20 8.15 16 22 C -0.19 -1.29 8.92 71.24 0.64 -0.66 16 23 O -0.50 -14.91 17.06 -2.96 -0.05 -14.97 16 24 C 0.01 0.14 8.78 22.90 0.20 0.34 16 25 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.13 -0.02 6.46 -2.39 -0.02 -0.04 16 28 H 0.12 4.92 7.50 -2.91 -0.02 4.90 16 29 H 0.42 15.17 8.95 -96.75 -0.87 14.30 16 30 H 0.30 16.34 8.31 -92.71 -0.77 15.57 16 31 H 0.14 4.53 7.63 -2.91 -0.02 4.51 16 32 H 0.13 -0.05 8.08 -2.39 -0.02 -0.07 16 33 H 0.09 0.67 8.12 -2.39 -0.02 0.65 16 34 H 0.13 0.20 8.08 -2.39 -0.02 0.18 16 35 H 0.21 0.54 5.31 -2.91 -0.02 0.52 16 Total: -1.00 -93.92 329.18 0.90 -93.02 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.29 Total: 19.83 kcal Atomic # 6 Polarization: -48.01 SS G_CDS: 3.45 Total: -44.55 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -0.01 Total: -99.32 kcal Atomic # 8 Polarization: -159.54 SS G_CDS: -4.57 Total: -164.11 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: 151.33 SS G_CDS: -0.28 Total: 151.05 kcal Total: -93.92 0.90 -93.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982102.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.721 kcal (2) G-P(sol) polarization free energy of solvation -93.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds