Wall clock time and date at job start Tue Mar 31 2020 10:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47199 * 2 1 4 4 N 1.46897 * 109.47359 * 174.87334 * 3 2 1 5 5 C 1.46892 * 111.00244 * 199.70688 * 4 3 2 6 6 C 1.50700 * 109.47065 * 66.04792 * 5 4 3 7 7 H 1.08003 * 119.99823 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00355 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99461 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00194 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47132 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47267 * 120.00133 * 10 8 6 13 13 H 1.48505 * 109.47464 * 240.00137 * 10 8 6 14 14 C 1.46909 * 110.99811 * 75.75732 * 4 3 2 15 15 C 1.50694 * 109.47152 * 199.76457 * 14 4 3 16 16 C 1.38258 * 119.99833 * 264.64010 * 15 14 4 17 17 C 1.38220 * 120.02106 * 180.27812 * 16 15 14 18 18 C 1.38234 * 120.01040 * 359.48790 * 17 16 15 19 19 C 1.38307 * 119.99031 * 0.25534 * 18 17 16 20 20 Br 1.89103 * 120.01037 * 179.97438 * 19 18 17 21 21 C 1.38203 * 119.99252 * 84.40955 * 15 14 4 22 22 H 1.09004 * 109.47341 * 60.00125 * 1 2 3 23 23 H 1.08999 * 109.47125 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47551 * 300.00258 * 1 2 3 25 25 H 1.08995 * 109.47294 * 240.00210 * 2 1 3 26 26 H 1.09004 * 109.47341 * 119.99875 * 2 1 3 27 27 H 1.09000 * 109.46908 * 54.87176 * 3 2 1 28 28 H 1.09000 * 109.47274 * 294.88177 * 3 2 1 29 29 H 1.09003 * 109.47741 * 186.04950 * 5 4 3 30 30 H 1.09010 * 109.47547 * 306.04906 * 5 4 3 31 31 H 0.97007 * 119.99956 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.47192 * 79.76437 * 14 4 3 33 33 H 1.08998 * 109.46480 * 319.76790 * 14 4 3 34 34 H 1.08005 * 119.98836 * 0.02562 * 16 15 14 35 35 H 1.08001 * 119.99258 * 179.76638 * 17 16 15 36 36 H 1.08002 * 120.00584 * 180.23176 * 18 17 16 37 37 H 1.07999 * 120.00636 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4444 0.1238 5 6 3.9909 2.7493 0.5902 6 6 3.5118 2.9902 1.9986 7 1 2.9056 2.2483 2.4971 8 6 3.8473 4.1578 2.6508 9 7 4.5851 5.0614 2.0435 10 14 3.2541 4.4560 4.3967 11 1 2.4472 3.2948 4.8505 12 1 4.4243 4.6262 5.2949 13 1 2.4195 5.6838 4.4331 14 6 4.1399 1.0682 -1.1459 15 6 5.5517 0.6109 -0.8842 16 6 6.6015 1.5016 -1.0108 17 6 7.8972 1.0812 -0.7765 18 6 8.1430 -0.2274 -0.4052 19 6 7.0927 -1.1175 -0.2733 20 35 7.4283 -2.9081 0.2339 21 6 5.7964 -0.6977 -0.5131 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6036 1.9822 0.8405 28 1 1.7534 1.9292 -0.9323 29 1 5.0808 2.7585 0.5706 30 1 3.6092 3.5344 -0.0627 31 1 4.8215 5.8827 2.5025 32 1 4.1548 1.9293 -1.8140 33 1 3.5756 0.2588 -1.6090 34 1 6.4094 2.5253 -1.2968 35 1 8.7173 1.7765 -0.8792 36 1 9.1551 -0.5549 -0.2185 37 1 4.9759 -1.3924 -0.4102 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203768593.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:18 Heat of formation + Delta-G solvation = 16.039861 kcal Electronic energy + Delta-G solvation = -17959.134605 eV Core-core repulsion = 15167.984326 eV Total energy + Delta-G solvation = -2791.150279 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.21627 -36.91770 -33.23407 -32.71827 -31.89615 -30.91112 -29.00922 -27.36843 -25.99399 -24.01368 -22.28585 -21.41448 -20.97315 -19.71807 -16.57054 -16.41883 -15.37534 -15.06625 -14.65853 -14.55813 -14.31515 -13.52764 -13.32371 -13.18632 -12.95333 -12.57374 -12.15723 -11.93844 -11.64214 -11.50375 -11.15206 -10.89953 -10.83387 -10.76851 -10.67069 -10.58781 -10.32483 -10.14638 -10.02820 -9.74990 -9.18673 -8.58744 -8.45517 -8.37387 -7.28545 -6.03946 -4.04086 1.39558 1.57817 1.79497 3.30178 3.37991 3.42791 3.87553 4.42980 4.91499 5.01925 5.13587 5.31926 5.34733 5.42168 5.52751 5.57332 5.61142 5.69230 5.81966 5.95566 6.03938 6.10823 6.19024 6.25554 6.27134 6.42581 6.44066 6.60841 6.70685 6.81534 6.87922 7.09001 7.28978 7.32104 7.79821 8.07922 8.18867 8.52722 9.03539 9.59857 11.07068 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.012799 B = 0.004535 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.124420 B = 6172.858070 C = 7023.416237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.061 3.939 4 N -0.531 5.531 5 C 0.190 3.810 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.088 3.912 15 C -0.051 4.051 16 C -0.087 4.087 17 C -0.116 4.116 18 C -0.100 4.100 19 C -0.092 4.092 20 Br -0.068 7.068 21 C -0.070 4.070 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.018 0.982 29 H 0.036 0.964 30 H -0.011 1.011 31 H 0.260 0.740 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.830 -13.342 -7.788 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.067 4.067 4 N -0.256 5.256 5 C 0.065 3.935 6 C -0.543 4.543 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.040 4.040 15 C -0.053 4.053 16 C -0.106 4.106 17 C -0.134 4.134 18 C -0.121 4.121 19 C -0.171 4.171 20 Br 0.017 6.983 21 C -0.091 4.091 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.007 0.993 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.152 -14.179 -7.212 16.440 hybrid contribution -0.453 1.383 0.364 1.500 sum 3.698 -12.796 -6.847 14.977 Atomic orbital electron populations 1.21727 0.96521 1.00809 1.01609 1.21550 0.94531 0.97908 1.01719 1.22055 0.88729 0.95424 1.00481 1.62124 1.04494 1.34512 1.24425 1.19810 0.96328 0.82211 0.95141 1.21189 1.32035 1.02525 0.98536 0.91844 1.24962 0.95350 0.96063 0.98152 1.69961 1.37731 1.08772 1.37369 0.86490 0.78547 0.78047 0.84660 1.19646 1.21034 1.21134 1.21046 0.90964 0.99241 0.92750 1.19850 0.95674 0.92577 0.97196 1.21290 0.92245 0.99520 0.97537 1.21080 0.97154 0.95172 1.00035 1.20972 0.97921 0.93274 0.99888 1.21646 0.96369 0.90959 1.08153 1.96627 1.96246 1.14049 1.91379 1.20879 0.94490 0.96248 0.97445 0.93304 0.93319 0.92639 0.93163 0.91371 0.89424 0.96349 0.94599 0.99321 0.93042 0.94483 0.91019 0.85449 0.85474 0.85665 0.85344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.15 0.37 -1.56 16 2 C -0.12 -1.82 5.98 -26.73 -0.16 -1.98 16 3 C 0.06 1.14 4.79 -3.82 -0.02 1.12 16 4 N -0.53 -10.99 4.35 -237.52 -1.03 -12.03 16 5 C 0.19 4.79 4.54 -4.98 -0.02 4.77 16 6 C -0.50 -13.94 8.23 -34.44 -0.28 -14.22 16 7 H 0.06 1.76 7.31 -52.48 -0.38 1.37 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 10 Si 0.89 21.61 29.54 -169.99 -5.02 16.58 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.09 1.52 4.95 -4.97 -0.02 1.50 16 15 C -0.05 -0.87 5.04 -104.63 -0.53 -1.40 16 16 C -0.09 -1.43 8.40 -39.58 -0.33 -1.76 16 17 C -0.12 -1.68 10.05 -39.59 -0.40 -2.08 16 18 C -0.10 -1.42 9.79 -39.56 -0.39 -1.81 16 19 C -0.09 -1.38 6.22 -39.52 -0.25 -1.62 16 20 Br -0.07 -0.89 33.70 -68.01 -2.29 -3.18 16 21 C -0.07 -1.12 9.47 -39.55 -0.37 -1.49 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.70 6.89 -51.93 -0.36 0.35 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.09 1.84 6.58 -51.93 -0.34 1.49 16 28 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 29 H 0.04 0.96 6.31 -51.93 -0.33 0.63 16 30 H -0.01 -0.30 8.12 -51.92 -0.42 -0.72 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.04 0.64 7.91 -51.93 -0.41 0.23 16 33 H 0.07 1.09 6.54 -51.93 -0.34 0.75 16 34 H 0.13 2.10 7.98 -52.48 -0.42 1.68 16 35 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 325.69 15.07 4.91 4.91 Total: -1.00 -28.99 325.69 -10.71 -39.71 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -5.51 Total: -1.34 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -2.50 Total: -19.06 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.30 Total: -37.61 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -2.29 Total: -3.18 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.99 -10.71 -39.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203768593.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.745 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds