Wall clock time and date at job start Tue Mar 31 2020 09:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 120.00560 * 2 1 4 4 H 1.48500 * 109.47172 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47136 * 300.00288 * 3 2 1 6 6 H 1.48504 * 109.46775 * 60.00450 * 3 2 1 7 7 C 1.39937 * 119.99525 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00254 * 197.51532 * 7 2 1 9 9 C 1.41442 * 120.00319 * 17.52045 * 7 2 1 10 10 C 1.40803 * 120.60865 * 203.41521 * 9 7 2 11 11 N 1.31491 * 120.66530 * 180.02562 * 10 9 7 12 12 C 1.31941 * 122.12330 * 0.02562 * 11 10 9 13 13 C 1.39667 * 121.14676 * 359.97438 * 12 11 10 14 14 C 1.48420 * 120.40440 * 179.97438 * 13 12 11 15 15 C 1.39318 * 120.10405 * 180.02562 * 14 13 12 16 16 C 1.38227 * 119.85059 * 180.02562 * 15 14 13 17 17 F 1.35100 * 119.96303 * 180.02562 * 16 15 14 18 18 C 1.38560 * 120.07174 * 0.02562 * 16 15 14 19 19 C 1.38263 * 120.21258 * 359.97438 * 18 16 15 20 20 C 1.50700 * 119.92277 * 179.97438 * 19 18 16 21 21 F 1.39898 * 109.47384 * 359.97438 * 20 19 18 22 22 F 1.39901 * 109.47082 * 120.00216 * 20 19 18 23 23 F 1.39908 * 109.47024 * 239.99949 * 20 19 18 24 24 C 1.38050 * 120.15049 * 359.72035 * 19 18 16 25 25 C 1.39174 * 119.18369 * 0.02562 * 13 12 11 26 26 H 0.97011 * 119.99355 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.66616 * 0.02562 * 10 9 7 28 28 H 1.07998 * 119.42593 * 179.97438 * 12 11 10 29 29 H 1.07996 * 120.07158 * 0.02562 * 15 14 13 30 30 H 1.07995 * 119.89250 * 179.97438 * 18 16 15 31 31 H 1.07992 * 120.04016 * 180.27658 * 24 19 18 32 32 H 1.07998 * 120.95193 * 179.72363 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.7024 1.3461 0.0006 5 1 1.8837 2.3964 -1.2124 6 1 1.8837 2.3963 1.2126 7 6 2.0078 -1.2119 -0.0005 8 1 3.0503 -1.2339 0.2809 9 6 1.3498 -2.4083 -0.3698 10 6 1.8314 -3.6564 0.0694 11 7 1.2208 -4.7692 -0.2737 12 6 0.1434 -4.7723 -1.0352 13 6 -0.4044 -3.5812 -1.5166 14 6 -1.6167 -3.6038 -2.3726 15 6 -2.1576 -2.4119 -2.8498 16 6 -3.2871 -2.4391 -3.6461 17 9 -3.8131 -1.2847 -4.1106 18 6 -3.8803 -3.6491 -3.9686 19 6 -3.3459 -4.8336 -3.4964 20 6 -3.9968 -6.1459 -3.8507 21 9 -5.1146 -5.9092 -4.6579 22 9 -3.0828 -6.9480 -4.5424 23 9 -4.3974 -6.7987 -2.6799 24 6 -2.2145 -4.8174 -2.7057 25 6 0.2012 -2.3728 -1.1847 26 1 -0.4850 0.8402 0.0004 27 1 2.7112 -3.7000 0.6943 28 1 -0.3231 -5.7123 -1.2906 29 1 -1.6954 -1.4689 -2.5981 30 1 -4.7629 -3.6669 -4.5906 31 1 -1.7960 -5.7439 -2.3416 32 1 -0.1957 -1.4352 -1.5449 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241082439.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:37 Heat of formation + Delta-G solvation = -153.959435 kcal Electronic energy + Delta-G solvation = -24543.226137 eV Core-core repulsion = 20160.414531 eV Total energy + Delta-G solvation = -4382.811606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.21107 -48.86744 -47.73941 -47.65022 -39.51897 -38.05657 -34.30477 -33.07234 -31.29521 -30.55869 -28.72725 -26.43275 -25.63782 -23.38407 -22.75440 -21.29158 -20.68048 -18.52504 -18.52426 -18.45387 -17.30776 -16.70534 -16.23062 -16.00658 -15.61981 -15.56717 -15.11534 -14.56136 -14.49457 -14.35139 -14.10899 -14.05874 -13.82341 -13.80277 -13.16868 -13.08728 -12.94673 -12.63639 -12.22407 -12.03162 -11.97024 -11.57284 -11.44010 -11.32091 -10.97207 -10.69089 -10.08242 -9.74682 -9.55920 -8.92156 -8.34829 -8.12528 -7.58443 -7.05241 -4.69556 0.77720 0.99918 2.40430 2.56968 2.66893 2.92994 2.97535 3.02727 3.58677 3.59697 3.71510 3.92342 4.32912 4.36022 4.43147 4.75996 4.95452 5.03597 5.25905 5.43419 5.48935 5.76790 5.88879 5.97061 6.09590 6.23168 6.29706 6.52699 6.75977 6.80252 6.88533 6.97906 7.39402 7.61107 7.66561 8.18867 8.44750 8.47753 9.39265 9.85487 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.018254 B = 0.004060 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.539995 B = 6895.274502 C = 8184.036264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.445 4.445 8 H 0.087 0.913 9 C 0.060 3.940 10 C -0.009 4.009 11 N -0.467 5.467 12 C -0.020 4.020 13 C -0.103 4.103 14 C 0.027 3.973 15 C -0.120 4.120 16 C 0.103 3.897 17 F -0.135 7.135 18 C -0.131 4.131 19 C -0.156 4.156 20 C 0.513 3.487 21 F -0.179 7.179 22 F -0.174 7.174 23 F -0.174 7.174 24 C -0.082 4.082 25 C -0.111 4.111 26 H 0.286 0.714 27 H 0.130 0.870 28 H 0.124 0.876 29 H 0.152 0.848 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.241 -3.578 -6.938 10.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.474 4.474 8 H 0.105 0.895 9 C 0.055 3.945 10 C -0.170 4.170 11 N -0.173 5.173 12 C -0.178 4.178 13 C -0.106 4.106 14 C 0.026 3.974 15 C -0.138 4.138 16 C 0.084 3.916 17 F -0.114 7.114 18 C -0.150 4.150 19 C -0.157 4.157 20 C 0.459 3.541 21 F -0.160 7.160 22 F -0.156 7.156 23 F -0.155 7.155 24 C -0.101 4.101 25 C -0.136 4.136 26 H 0.097 0.903 27 H 0.148 0.852 28 H 0.141 0.859 29 H 0.169 0.831 30 H 0.163 0.837 31 H 0.160 0.840 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.160 -4.203 -6.654 10.640 hybrid contribution -0.350 1.654 -0.385 1.734 sum -7.511 -2.549 -7.039 10.604 Atomic orbital electron populations 1.69769 1.07771 1.29924 1.33834 1.26003 0.94831 1.01834 0.91834 0.86159 0.81044 0.80230 0.78878 1.18079 1.19435 1.19689 1.19641 0.98330 0.90690 1.38738 0.89489 1.18476 0.92039 0.93891 0.90064 1.22624 1.02298 0.87927 1.04162 1.66973 1.07686 1.31962 1.10701 1.21766 0.96885 0.95141 1.03962 1.19292 0.94858 0.96033 1.00370 1.18719 0.93958 0.90898 0.93796 1.21625 0.94720 1.00837 0.96636 1.17321 0.94618 0.81334 0.98324 1.91515 1.85814 1.47043 1.86981 1.20739 1.01709 0.90176 1.02330 1.19540 0.99597 0.91483 1.05085 1.18178 0.76294 0.85093 0.74552 1.93155 1.54213 1.94443 1.74190 1.93226 1.66659 1.75786 1.79906 1.93231 1.91034 1.83064 1.48220 1.21029 0.93448 0.99486 0.96094 1.21851 0.97683 0.95895 0.98142 0.90311 0.85243 0.85864 0.83075 0.83741 0.83959 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.27 10.92 55.55 0.61 -17.66 16 2 C 0.07 1.67 5.18 -17.34 -0.09 1.58 16 3 Si 0.91 16.90 29.59 -169.99 -5.03 11.87 16 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 5 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 6 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.44 -10.60 9.08 -37.73 -0.34 -10.94 16 8 H 0.09 1.97 7.91 -52.48 -0.41 1.56 16 9 C 0.06 1.45 5.59 -106.71 -0.60 0.86 16 10 C -0.01 -0.21 10.96 -16.73 -0.18 -0.39 16 11 N -0.47 -10.78 10.32 -12.29 -0.13 -10.91 16 12 C -0.02 -0.42 10.60 -16.97 -0.18 -0.60 16 13 C -0.10 -2.17 5.88 -104.82 -0.62 -2.79 16 14 C 0.03 0.48 5.88 -104.90 -0.62 -0.13 16 15 C -0.12 -2.01 9.41 -39.18 -0.37 -2.38 16 16 C 0.10 1.55 7.29 -39.47 -0.29 1.26 16 17 F -0.14 -2.02 17.26 2.25 0.04 -1.98 16 18 C -0.13 -1.76 9.41 -39.45 -0.37 -2.13 16 19 C -0.16 -2.16 5.37 -104.68 -0.56 -2.72 16 20 C 0.51 6.54 3.31 36.01 0.12 6.66 16 21 F -0.18 -2.16 15.96 2.25 0.04 -2.12 16 22 F -0.17 -2.27 17.23 2.25 0.04 -2.23 16 23 F -0.17 -2.29 17.24 2.25 0.04 -2.25 16 24 C -0.08 -1.27 8.98 -39.25 -0.35 -1.62 16 25 C -0.11 -2.57 8.16 -38.24 -0.31 -2.88 16 26 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 27 H 0.13 2.79 8.06 -52.49 -0.42 2.37 16 28 H 0.12 2.27 6.20 -52.49 -0.33 1.94 16 29 H 0.15 2.64 6.26 -52.49 -0.33 2.31 16 30 H 0.14 1.64 7.14 -52.49 -0.37 1.26 16 31 H 0.14 2.02 6.21 -52.49 -0.33 1.70 16 32 H 0.13 3.09 4.44 -52.49 -0.23 2.86 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -24.58 299.47 -6.21 -30.79 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -1.56 Total: 6.20 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -4.76 Total: -16.22 kcal Atomic # 7 Polarization: -29.05 SS G_CDS: 0.48 Total: -28.57 kcal Atomic # 9 Polarization: -8.73 SS G_CDS: 0.15 Total: -8.58 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -24.58 -6.21 -30.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241082439.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.174 kcal (2) G-P(sol) polarization free energy of solvation -24.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds