Wall clock time and date at job start Tue Mar 31 2020 09:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30716 * 1 3 3 Si 1.86795 * 120.00081 * 2 1 4 4 H 1.48493 * 109.47513 * 240.27555 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27459 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27446 * 3 2 1 7 7 C 1.40105 * 119.99847 * 180.27442 * 2 1 3 8 8 H 1.07999 * 119.99959 * 179.72759 * 7 2 1 9 9 C 1.40992 * 119.99975 * 359.72553 * 7 2 1 10 10 C 1.40868 * 119.68258 * 180.02562 * 9 7 2 11 11 C 1.36687 * 119.25552 * 180.02562 * 10 9 7 12 12 C 1.40258 * 118.60316 * 359.97438 * 11 10 9 13 13 C 1.47972 * 120.34342 * 179.97438 * 12 11 10 14 14 C 1.39606 * 120.13378 * 359.72739 * 13 12 11 15 15 C 1.38135 * 119.82457 * 179.69721 * 14 13 12 16 16 F 1.35098 * 119.95175 * 180.29940 * 15 14 13 17 17 C 1.38642 * 120.09749 * 0.60130 * 15 14 13 18 18 C 1.38340 * 120.26656 * 359.67098 * 17 15 14 19 19 C 1.50695 * 119.91255 * 180.02562 * 18 17 15 20 20 F 1.39906 * 109.47166 * 269.98133 * 19 18 17 21 21 F 1.39897 * 109.47486 * 29.98196 * 19 18 17 22 22 F 1.39908 * 109.46934 * 149.98421 * 19 18 17 23 23 C 1.37965 * 120.17156 * 0.02839 * 18 17 15 24 24 C 1.40096 * 119.30860 * 0.02562 * 12 11 10 25 25 N 1.31183 * 120.68811 * 359.71546 * 24 12 11 26 26 H 0.97000 * 119.99524 * 359.72767 * 1 2 3 27 27 H 1.08000 * 120.37137 * 359.97438 * 10 9 7 28 28 H 1.08003 * 120.69481 * 180.02562 * 11 10 9 29 29 H 1.08004 * 120.08623 * 359.97438 * 14 13 12 30 30 H 1.08001 * 119.86803 * 179.69910 * 17 15 14 31 31 H 1.07996 * 120.04735 * 180.02562 * 23 18 17 32 32 H 1.08002 * 119.65244 * 179.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.0898 1.6993 -1.2158 5 1 1.2762 2.7465 0.0067 6 1 3.1000 1.6935 1.2092 7 6 2.0077 -1.2133 -0.0058 8 1 3.0876 -1.2134 -0.0103 9 6 1.3027 -2.4344 -0.0058 10 6 2.0137 -3.6504 -0.0111 11 6 1.3215 -4.8290 -0.0116 12 6 -0.0804 -4.7843 -0.0062 13 6 -0.8682 -6.0369 -0.0071 14 6 -0.2194 -7.2730 -0.0191 15 6 -0.9611 -8.4383 -0.0135 16 9 -0.3358 -9.6358 -0.0190 17 6 -2.3463 -8.3808 -0.0087 18 6 -2.9934 -7.1580 -0.0025 19 6 -4.4994 -7.1048 0.0033 20 9 -4.9704 -7.0839 -1.3139 21 9 -5.0034 -8.2321 0.6609 22 9 -4.9225 -5.9489 0.6683 23 6 -2.2635 -5.9873 -0.0018 24 6 -0.7269 -3.5415 -0.0011 25 7 -0.0351 -2.4269 0.0043 26 1 -0.4849 0.8401 0.0040 27 1 3.0937 -3.6514 -0.0156 28 1 1.8430 -5.7747 -0.0152 29 1 0.8597 -7.3179 -0.0281 30 1 -2.9225 -9.2942 -0.0092 31 1 -2.7707 -5.0338 0.0035 32 1 -1.8062 -3.5006 0.0027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241082639.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:22 Heat of formation + Delta-G solvation = -146.053520 kcal Electronic energy + Delta-G solvation = -24240.573623 eV Core-core repulsion = 19858.104843 eV Total energy + Delta-G solvation = -4382.468780 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.10371 -48.80598 -47.61968 -47.56003 -39.31027 -37.95303 -34.19458 -32.51886 -31.19676 -30.71233 -29.09938 -26.16000 -25.84648 -23.06346 -22.58047 -21.23170 -20.68950 -18.43763 -18.37525 -18.23363 -17.87554 -16.47897 -16.13506 -15.92775 -15.58180 -15.49099 -14.68963 -14.45536 -14.37926 -14.20874 -14.07157 -13.99799 -13.73339 -13.72434 -13.05201 -12.93517 -12.82081 -12.69042 -12.23298 -12.09393 -11.66634 -11.45691 -11.39777 -11.21520 -10.99999 -10.57397 -10.25862 -9.90504 -9.24074 -8.79192 -8.49340 -7.88455 -7.51131 -6.77192 -4.83942 0.94731 1.18114 2.48233 2.69503 2.84797 2.89937 2.91570 2.95131 3.67380 3.72007 3.73228 4.05662 4.44073 4.47368 4.53080 4.94323 5.12774 5.18624 5.40829 5.61940 5.66061 5.78446 5.90353 6.16402 6.16970 6.28679 6.31555 6.48661 6.68211 6.74423 6.94449 7.07223 7.30224 7.46338 7.69402 7.85165 8.25095 8.54482 9.75912 9.91765 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.019238 B = 0.003473 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.087941 B = 8061.087280 C = 9341.670458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.690 5.690 2 C 0.059 3.941 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.391 4.391 8 H 0.091 0.909 9 C 0.248 3.752 10 C -0.268 4.268 11 C -0.030 4.030 12 C -0.292 4.292 13 C 0.069 3.931 14 C -0.162 4.162 15 C 0.114 3.886 16 F -0.141 7.141 17 C -0.161 4.161 18 C -0.140 4.140 19 C 0.511 3.489 20 F -0.177 7.177 21 F -0.180 7.180 22 F -0.174 7.174 23 C -0.113 4.113 24 C 0.168 3.832 25 N -0.487 5.487 26 H 0.282 0.718 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.174 -8.571 -0.012 9.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.308 5.308 2 C -0.170 4.170 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.420 4.420 8 H 0.109 0.891 9 C 0.127 3.873 10 C -0.290 4.290 11 C -0.053 4.053 12 C -0.298 4.298 13 C 0.068 3.932 14 C -0.181 4.181 15 C 0.094 3.906 16 F -0.119 7.119 17 C -0.180 4.180 18 C -0.141 4.141 19 C 0.457 3.543 20 F -0.158 7.158 21 F -0.161 7.161 22 F -0.155 7.155 23 C -0.132 4.132 24 C -0.003 4.003 25 N -0.199 5.199 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.721 -7.568 -0.006 8.920 hybrid contribution 0.632 -0.471 -0.006 0.788 sum -4.090 -8.039 -0.011 9.019 Atomic orbital electron populations 1.70092 1.07486 1.29005 1.24263 1.26263 0.95118 1.01775 0.93804 0.86231 0.80129 0.79509 0.80286 1.18542 1.19780 1.18539 1.19912 0.94906 0.89613 1.37549 0.89072 1.18700 0.88620 0.92014 0.88011 1.21448 0.99080 0.93410 1.15100 1.20642 0.92819 0.96946 0.94869 1.18856 0.93167 0.91681 1.26051 1.18574 0.91425 0.92467 0.90761 1.21323 1.00978 0.90609 1.05169 1.17291 0.89999 0.80551 1.02727 1.91483 1.82671 1.43743 1.94039 1.20481 0.93038 0.97549 1.06961 1.19493 0.90252 0.95515 1.08874 1.18273 0.88798 0.73522 0.73744 1.93220 1.90224 1.96144 1.36256 1.93170 1.89267 1.52362 1.81309 1.93207 1.91573 1.49937 1.80829 1.21017 0.93842 0.97120 1.01179 1.22793 0.98782 0.87720 0.90989 1.68823 1.07053 1.26199 1.17782 0.90699 0.87815 0.88099 0.84408 0.84579 0.84263 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.65 11.44 55.56 0.64 -16.02 16 2 C 0.06 1.35 5.50 -17.33 -0.10 1.26 16 3 Si 0.92 16.62 29.56 -169.99 -5.02 11.59 16 4 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 5 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 6 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 7 C -0.39 -9.40 9.12 -37.84 -0.35 -9.75 16 8 H 0.09 2.00 7.85 -52.49 -0.41 1.59 16 9 C 0.25 6.17 6.55 -84.98 -0.56 5.62 16 10 C -0.27 -5.93 9.76 -39.15 -0.38 -6.31 16 11 C -0.03 -0.61 9.46 -39.38 -0.37 -0.98 16 12 C -0.29 -5.93 5.92 -104.45 -0.62 -6.55 16 13 C 0.07 1.21 5.88 -104.88 -0.62 0.59 16 14 C -0.16 -2.57 9.42 -39.11 -0.37 -2.93 16 15 C 0.11 1.69 7.29 -39.47 -0.29 1.41 16 16 F -0.14 -2.04 17.26 2.25 0.04 -2.01 16 17 C -0.16 -2.27 9.38 -39.39 -0.37 -2.64 16 18 C -0.14 -2.06 5.45 -104.69 -0.57 -2.63 16 19 C 0.51 7.01 3.36 36.00 0.12 7.13 16 20 F -0.18 -2.46 17.30 2.25 0.04 -2.42 16 21 F -0.18 -2.36 16.45 2.25 0.04 -2.32 16 22 F -0.17 -2.46 16.45 2.25 0.04 -2.43 16 23 C -0.11 -1.82 8.79 -39.17 -0.34 -2.16 16 24 C 0.17 3.72 10.60 -17.13 -0.18 3.54 16 25 N -0.49 -12.30 7.83 -10.85 -0.08 -12.39 16 26 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 27 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 28 H 0.10 1.73 6.30 -52.48 -0.33 1.40 16 29 H 0.14 2.03 6.25 -52.48 -0.33 1.70 16 30 H 0.14 1.65 7.59 -52.49 -0.40 1.26 16 31 H 0.14 2.15 5.75 -52.49 -0.30 1.85 16 32 H 0.13 2.45 6.21 -52.49 -0.33 2.13 16 LS Contribution 300.40 15.07 4.53 4.53 Total: -1.00 -25.09 300.40 -6.44 -31.53 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -1.65 Total: 4.34 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -4.99 Total: -14.41 kcal Atomic # 7 Polarization: -28.96 SS G_CDS: 0.55 Total: -28.41 kcal Atomic # 9 Polarization: -9.32 SS G_CDS: 0.15 Total: -9.17 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.02 Total: 11.59 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -25.09 -6.44 -31.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241082639.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.525 kcal (2) G-P(sol) polarization free energy of solvation -25.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds