Wall clock time and date at job start Tue Mar 31 2020 09:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86803 * 119.99996 * 2 1 4 4 H 1.48506 * 109.46970 * 90.00302 * 3 2 1 5 5 H 1.48500 * 109.47182 * 209.99705 * 3 2 1 6 6 H 1.48496 * 109.47192 * 329.99974 * 3 2 1 7 7 C 1.40153 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00560 * 16.27298 * 7 2 1 9 9 C 1.40826 * 119.99701 * 196.26914 * 7 2 1 10 10 N 1.33691 * 119.93878 * 7.48827 * 9 7 2 11 11 C 1.31282 * 121.63686 * 179.97438 * 10 9 7 12 12 C 1.39057 * 121.33719 * 0.02562 * 11 10 9 13 13 C 1.38389 * 119.72468 * 0.02562 * 12 11 10 14 14 C 1.39680 * 118.47557 * 359.74307 * 13 12 11 15 15 C 1.47822 * 120.64952 * 180.24996 * 14 13 12 16 16 C 1.39674 * 120.14071 * 129.97550 * 15 14 13 17 17 C 1.38114 * 119.81996 * 179.72189 * 16 15 14 18 18 F 1.35101 * 119.94974 * 180.31889 * 17 16 15 19 19 C 1.38652 * 120.10072 * 0.57823 * 17 16 15 20 20 C 1.38343 * 120.28323 * 359.69774 * 19 17 16 21 21 C 1.50704 * 119.91099 * 180.02562 * 20 19 17 22 22 F 1.39896 * 109.47321 * 269.97605 * 21 20 19 23 23 F 1.39902 * 109.47139 * 29.97955 * 21 20 19 24 24 F 1.39910 * 109.46916 * 149.97855 * 21 20 19 25 25 C 1.37945 * 120.17776 * 359.97438 * 20 19 17 26 26 H 0.97005 * 120.00037 * 175.62655 * 1 2 3 27 27 H 1.08003 * 119.33352 * 179.97438 * 11 10 9 28 28 H 1.07996 * 120.13610 * 180.02562 * 12 11 10 29 29 H 1.08001 * 120.76249 * 179.97438 * 13 12 11 30 30 H 1.08002 * 120.08720 * 0.02562 * 16 15 14 31 31 H 1.08004 * 119.86111 * 179.72084 * 19 17 16 32 32 H 1.08002 * 120.05265 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4884 2.0464 1.4001 5 1 3.5384 1.4402 -0.7000 6 1 1.4383 2.6527 -0.7000 7 6 2.0076 -1.2138 -0.0005 8 1 1.5001 -2.1302 -0.2630 9 6 3.3735 -1.2383 0.3411 10 7 3.9642 -0.1341 0.8093 11 6 5.2350 -0.1196 1.1384 12 6 6.0272 -1.2557 1.0142 13 6 5.4731 -2.4295 0.5342 14 6 4.1190 -2.4353 0.1915 15 6 3.4766 -3.6642 -0.3207 16 6 2.2794 -4.1155 0.2395 17 6 1.6819 -5.2613 -0.2481 18 9 0.5205 -5.6966 0.2875 19 6 2.2750 -5.9684 -1.2828 20 6 3.4638 -5.5284 -1.8369 21 6 4.1008 -6.3032 -2.9617 22 9 4.9729 -7.2609 -2.4330 23 9 3.1060 -6.9412 -3.7105 24 9 4.8149 -5.4267 -3.7859 25 6 4.0671 -4.3818 -1.3634 26 1 -0.4850 -0.8376 -0.0641 27 1 5.6743 0.7933 1.5126 28 1 7.0705 -1.2221 1.2911 29 1 6.0730 -3.3215 0.4305 30 1 1.8196 -3.5672 1.0484 31 1 1.8068 -6.8664 -1.6581 32 1 4.9949 -4.0399 -1.7978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241084492.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:06 Heat of formation + Delta-G solvation = -160.389964 kcal Electronic energy + Delta-G solvation = -25053.091654 eV Core-core repulsion = 20670.001199 eV Total energy + Delta-G solvation = -4383.090455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.15157 -48.74407 -47.65977 -47.61597 -39.50773 -38.15126 -34.13136 -32.97253 -31.46477 -30.81056 -29.05429 -26.23005 -25.63385 -23.54623 -22.11669 -21.51816 -20.69083 -18.62432 -18.48761 -18.41680 -18.25288 -16.25309 -16.18954 -16.02672 -15.68924 -15.45808 -15.00537 -14.58370 -14.49481 -14.29698 -14.05382 -13.95694 -13.78440 -13.77267 -13.22228 -12.95507 -12.72216 -12.65108 -12.33975 -12.18477 -12.15765 -11.79643 -11.35740 -10.97017 -10.75824 -10.18567 -10.04906 -9.34834 -9.23500 -8.76694 -8.58481 -8.07368 -7.81875 -7.49188 -5.01706 0.97138 1.19178 2.27900 2.46381 2.65164 3.42121 3.50470 3.57580 3.68397 3.81149 4.01640 4.21721 4.36832 4.44296 4.49442 4.90019 5.11235 5.18080 5.28751 5.41835 5.54387 5.67141 5.77318 6.06493 6.10748 6.11746 6.25861 6.31267 6.59194 6.73632 6.91242 7.08088 7.17893 7.24957 7.44935 7.82986 8.03547 8.36950 9.25243 9.72752 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.015132 B = 0.005049 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.914515 B = 5544.369007 C = 6358.784180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.047 3.953 3 Si 1.142 2.858 4 H -0.283 1.283 5 H -0.278 1.278 6 H -0.324 1.324 7 C -0.464 4.464 8 H 0.095 0.905 9 C 0.260 3.740 10 N -0.563 5.563 11 C 0.164 3.836 12 C -0.318 4.318 13 C -0.011 4.011 14 C -0.242 4.242 15 C 0.056 3.944 16 C -0.115 4.115 17 C 0.099 3.901 18 F -0.137 7.137 19 C -0.135 4.135 20 C -0.157 4.157 21 C 0.513 3.487 22 F -0.178 7.178 23 F -0.179 7.179 24 F -0.175 7.175 25 C -0.091 4.091 26 H 0.288 0.712 27 H 0.131 0.869 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.989 -8.849 -2.524 10.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.177 4.177 3 Si 0.974 3.026 4 H -0.209 1.209 5 H -0.205 1.205 6 H -0.256 1.256 7 C -0.493 4.493 8 H 0.112 0.888 9 C 0.140 3.860 10 N -0.280 5.280 11 C -0.002 4.002 12 C -0.341 4.341 13 C -0.035 4.035 14 C -0.246 4.246 15 C 0.055 3.945 16 C -0.134 4.134 17 C 0.080 3.920 18 F -0.116 7.116 19 C -0.154 4.154 20 C -0.158 4.158 21 C 0.459 3.541 22 F -0.159 7.159 23 F -0.160 7.160 24 F -0.156 7.156 25 C -0.110 4.110 26 H 0.099 0.901 27 H 0.148 0.852 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.166 0.834 31 H 0.157 0.843 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.061 -6.650 -2.415 8.699 hybrid contribution 0.485 -2.882 -0.223 2.931 sum 5.545 -9.532 -2.638 11.339 Atomic orbital electron populations 1.70600 1.08390 1.33362 1.27805 1.27869 0.95168 1.06249 0.88456 0.82145 0.72714 0.69752 0.78035 1.20945 1.20507 1.25645 1.21032 0.93599 0.97639 1.37052 0.88765 1.18407 0.92910 0.86174 0.88550 1.66866 1.11861 1.28164 1.21085 1.22304 0.89670 0.96556 0.91659 1.21112 1.00232 0.95145 1.17587 1.21008 0.92827 0.96689 0.92963 1.18962 0.94315 0.93852 1.17490 1.18380 0.91997 0.92418 0.91710 1.21673 0.96348 0.94188 1.01148 1.17341 0.83926 0.95231 0.95483 1.91501 1.45746 1.89274 1.85078 1.20619 0.95715 1.01578 0.97490 1.19493 0.98237 0.98787 0.99290 1.18227 0.76308 0.77548 0.82057 1.93212 1.70756 1.65638 1.86321 1.93179 1.61411 1.83034 1.78362 1.93201 1.79246 1.68961 1.74203 1.21126 1.00566 0.93186 0.96083 0.90070 0.85199 0.87462 0.87613 0.83449 0.84294 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.84 13.65 55.56 0.76 -19.08 16 2 C 0.05 1.18 5.52 -17.32 -0.10 1.09 16 3 Si 1.14 26.05 25.94 -169.99 -4.41 21.64 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 6 H -0.32 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.46 -11.44 8.49 -37.88 -0.32 -11.76 16 8 H 0.09 2.29 5.19 -52.49 -0.27 2.02 16 9 C 0.26 6.16 6.30 -84.71 -0.53 5.63 16 10 N -0.56 -13.09 4.98 -10.91 -0.05 -13.15 16 11 C 0.16 3.26 11.17 -17.48 -0.20 3.06 16 12 C -0.32 -5.82 10.10 -39.22 -0.40 -6.22 16 13 C -0.01 -0.20 9.66 -38.99 -0.38 -0.58 16 14 C -0.24 -5.05 5.54 -104.08 -0.58 -5.62 16 15 C 0.06 1.05 5.07 -104.90 -0.53 0.52 16 16 C -0.11 -2.11 7.53 -39.09 -0.29 -2.40 16 17 C 0.10 1.66 7.29 -39.47 -0.29 1.37 16 18 F -0.14 -2.28 17.26 2.25 0.04 -2.24 16 19 C -0.13 -2.02 9.38 -39.39 -0.37 -2.39 16 20 C -0.16 -2.37 5.45 -104.69 -0.57 -2.94 16 21 C 0.51 7.07 3.36 36.01 0.12 7.19 16 22 F -0.18 -2.39 17.30 2.25 0.04 -2.35 16 23 F -0.18 -2.41 16.45 2.25 0.04 -2.37 16 24 F -0.17 -2.47 16.45 2.25 0.04 -2.43 16 25 C -0.09 -1.50 8.89 -39.15 -0.35 -1.85 16 26 H 0.29 7.01 8.72 -40.82 -0.36 6.65 16 27 H 0.13 2.15 8.06 -52.48 -0.42 1.73 16 28 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 30 H 0.15 2.86 7.17 -52.49 -0.38 2.48 16 31 H 0.14 1.78 7.59 -52.48 -0.40 1.38 16 32 H 0.14 2.09 7.59 -52.49 -0.40 1.70 16 LS Contribution 296.94 15.07 4.47 4.47 Total: -1.00 -25.14 296.94 -5.75 -30.89 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -1.90 Total: -0.46 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -4.77 Total: -14.92 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.70 Total: -32.23 kcal Atomic # 9 Polarization: -9.55 SS G_CDS: 0.15 Total: -9.40 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -4.41 Total: 21.64 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -25.14 -5.75 -30.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241084492.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.495 kcal (2) G-P(sol) polarization free energy of solvation -25.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds