Wall clock time and date at job start Tue Mar 31 2020 09:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86800 * 119.99734 * 2 1 4 4 H 1.48505 * 109.47295 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47368 * 300.00113 * 3 2 1 6 6 H 1.48495 * 109.47149 * 59.99894 * 3 2 1 7 7 C 1.40043 * 120.00459 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00559 * 192.39718 * 7 2 1 9 9 C 1.41528 * 119.99707 * 12.40023 * 7 2 1 10 10 C 1.41150 * 120.98927 * 27.05799 * 9 7 2 11 11 C 1.37728 * 119.08302 * 180.02562 * 10 9 7 12 12 N 1.31931 * 121.15644 * 359.74631 * 11 10 9 13 13 C 1.32807 * 122.20169 * 0.52894 * 12 11 10 14 14 C 1.48319 * 119.61220 * 179.74979 * 13 12 11 15 15 C 1.39359 * 120.13537 * 174.36689 * 14 13 12 16 16 C 1.37983 * 119.90443 * 179.72169 * 15 14 13 17 17 C 1.50696 * 119.91102 * 179.97438 * 16 15 14 18 18 F 1.39907 * 109.46937 * 90.00317 * 17 16 15 19 19 F 1.39899 * 109.47189 * 209.99730 * 17 16 15 20 20 F 1.39895 * 109.47585 * 330.00348 * 17 16 15 21 21 C 1.38370 * 120.17515 * 0.02562 * 16 15 14 22 22 C 1.38242 * 120.28063 * 359.97438 * 21 16 15 23 23 C 1.38293 * 120.09234 * 359.97438 * 22 21 16 24 24 F 1.35101 * 120.09067 * 180.02562 * 23 22 21 25 25 C 1.38927 * 120.77009 * 359.46715 * 13 12 11 26 26 H 0.96998 * 120.00230 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.45756 * 0.02562 * 10 9 7 28 28 H 1.08002 * 119.42092 * 179.97438 * 11 10 9 29 29 H 1.08005 * 120.05035 * 359.69775 * 15 14 13 30 30 H 1.08004 * 119.85956 * 179.97438 * 21 16 15 31 31 H 1.08002 * 119.95567 * 180.02562 * 22 21 16 32 32 H 1.07992 * 120.61836 * 180.23252 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8825 2.3965 -1.2124 6 1 1.8825 2.3965 1.2124 7 6 2.0077 -1.2128 0.0005 8 1 3.0688 -1.2236 0.2013 9 6 1.3248 -2.4243 -0.2621 10 6 0.1542 -2.4425 -1.0506 11 6 -0.4792 -3.6436 -1.2808 12 7 -0.0077 -4.7705 -0.7825 13 6 1.0862 -4.8088 -0.0303 14 6 1.5625 -6.1074 0.5051 15 6 2.7706 -6.1785 1.1960 16 6 3.2064 -7.3880 1.6971 17 6 4.5131 -7.4653 2.4437 18 9 4.2848 -7.2481 3.8068 19 9 5.0800 -8.7312 2.2617 20 9 5.3874 -6.4882 1.9559 21 6 2.4472 -8.5304 1.5149 22 6 1.2475 -8.4684 0.8307 23 6 0.7995 -7.2619 0.3246 24 9 -0.3731 -7.2012 -0.3436 25 6 1.7929 -3.6474 0.2559 26 1 -0.4850 0.8400 0.0004 27 1 -0.2394 -1.5272 -1.4675 28 1 -1.3755 -3.6638 -1.8830 29 1 3.3653 -5.2883 1.3387 30 1 2.7933 -9.4746 1.9089 31 1 0.6589 -9.3632 0.6919 32 1 2.6842 -3.6818 0.8647 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241095702.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:05 Heat of formation + Delta-G solvation = -146.488734 kcal Electronic energy + Delta-G solvation = -24576.959107 eV Core-core repulsion = 20194.471455 eV Total energy + Delta-G solvation = -4382.487653 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.14572 -48.43308 -47.66868 -47.59535 -39.35763 -38.06043 -34.30379 -32.30541 -31.56787 -30.80666 -28.51690 -26.18834 -25.65561 -23.73195 -22.35734 -21.22967 -20.72827 -18.51544 -18.45405 -18.37360 -17.27916 -17.14016 -16.12668 -15.52457 -15.24148 -14.94282 -14.58510 -14.50205 -14.45909 -14.18577 -14.05568 -13.85138 -13.76480 -13.67592 -13.44093 -13.10252 -12.83636 -12.73306 -12.53667 -12.14281 -11.71298 -11.52839 -11.37596 -11.04428 -10.99001 -10.37383 -10.01586 -9.59753 -9.32544 -8.92517 -8.17492 -8.13128 -7.42048 -6.93276 -4.73272 0.81109 1.04232 2.58184 2.64681 2.66316 2.97489 3.02662 3.08790 3.57588 3.71119 3.78422 4.01766 4.35848 4.43235 4.56649 4.72644 4.79308 5.04231 5.25486 5.49913 5.54812 5.78014 5.94453 6.02349 6.13431 6.18991 6.57546 6.70855 6.74035 6.87200 6.97944 7.16334 7.26872 7.71423 7.92523 8.30290 8.57344 8.61685 9.36723 9.98498 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.014884 B = 0.004243 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.750706 B = 6597.405605 C = 8236.819487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.454 4.454 8 H 0.084 0.916 9 C 0.125 3.875 10 C -0.197 4.197 11 C 0.088 3.912 12 N -0.549 5.549 13 C 0.139 3.861 14 C -0.046 4.046 15 C -0.036 4.036 16 C -0.203 4.203 17 C 0.513 3.487 18 F -0.177 7.177 19 F -0.180 7.180 20 F -0.175 7.175 21 C -0.054 4.054 22 C -0.166 4.166 23 C 0.158 3.842 24 F -0.105 7.105 25 C -0.242 4.242 26 H 0.284 0.716 27 H 0.129 0.871 28 H 0.126 0.874 29 H 0.149 0.851 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.885 -11.113 3.044 12.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.486 4.486 8 H 0.102 0.898 9 C 0.118 3.882 10 C -0.219 4.219 11 C -0.065 4.065 12 N -0.263 5.263 13 C 0.006 3.994 14 C -0.048 4.048 15 C -0.055 4.055 16 C -0.205 4.205 17 C 0.459 3.541 18 F -0.159 7.159 19 F -0.161 7.161 20 F -0.156 7.156 21 C -0.072 4.072 22 C -0.185 4.185 23 C 0.137 3.863 24 F -0.082 7.082 25 C -0.265 4.265 26 H 0.095 0.905 27 H 0.147 0.853 28 H 0.143 0.857 29 H 0.167 0.833 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.193 -11.724 2.843 12.771 hybrid contribution 0.712 1.676 0.259 1.839 sum 4.905 -10.048 3.101 11.604 Atomic orbital electron populations 1.69735 1.07683 1.29632 1.34435 1.25971 0.94855 1.01626 0.91876 0.86143 0.80880 0.80341 0.78751 1.18221 1.19529 1.19757 1.19640 0.96592 0.90178 1.42152 0.89837 1.17770 0.91044 0.91994 0.87435 1.22356 0.99590 0.98079 1.01910 1.22003 0.98193 0.88409 0.97883 1.67408 1.13848 1.30262 1.14830 1.18813 0.93602 0.89771 0.97254 1.18883 0.94047 0.92677 0.99192 1.20938 0.94561 0.96844 0.93126 1.19779 0.96284 0.96703 1.07739 1.18197 0.84933 0.73476 0.77467 1.93226 1.94672 1.94498 1.33473 1.93168 1.86685 1.41131 1.95144 1.93205 1.71730 1.63016 1.87689 1.20652 0.93033 0.97309 0.96210 1.21029 0.98025 0.97239 1.02222 1.17933 0.82750 0.93256 0.92315 1.91607 1.43233 1.96854 1.76552 1.21862 1.03723 0.93217 1.07748 0.90500 0.85282 0.85678 0.83349 0.84233 0.83844 0.87572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.27 10.88 55.55 0.60 -18.66 16 2 C 0.08 1.80 5.26 -17.34 -0.09 1.70 16 3 Si 0.91 17.62 29.58 -169.99 -5.03 12.59 16 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.45 -11.34 9.12 -37.65 -0.34 -11.68 16 8 H 0.08 1.99 7.88 -52.49 -0.41 1.58 16 9 C 0.13 3.18 5.58 -106.56 -0.59 2.59 16 10 C -0.20 -4.89 8.76 -38.66 -0.34 -5.23 16 11 C 0.09 2.04 11.15 -17.70 -0.20 1.84 16 12 N -0.55 -12.95 8.32 -9.95 -0.08 -13.03 16 13 C 0.14 3.14 6.72 -83.04 -0.56 2.58 16 14 C -0.05 -0.86 5.88 -104.84 -0.62 -1.48 16 15 C -0.04 -0.57 8.75 -39.26 -0.34 -0.91 16 16 C -0.20 -2.77 5.45 -104.67 -0.57 -3.34 16 17 C 0.51 6.57 3.36 36.00 0.12 6.69 16 18 F -0.18 -2.33 17.30 2.25 0.04 -2.29 16 19 F -0.18 -2.14 16.45 2.25 0.04 -2.10 16 20 F -0.18 -2.38 16.45 2.25 0.04 -2.35 16 21 C -0.05 -0.64 9.39 -39.53 -0.37 -1.01 16 22 C -0.17 -2.13 10.02 -39.56 -0.40 -2.53 16 23 C 0.16 2.67 7.27 -39.07 -0.28 2.39 16 24 F -0.10 -1.97 15.33 2.25 0.03 -1.93 16 25 C -0.24 -5.65 9.24 -38.34 -0.35 -6.00 16 26 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 27 H 0.13 3.24 6.27 -52.48 -0.33 2.91 16 28 H 0.13 2.56 8.06 -52.49 -0.42 2.14 16 29 H 0.15 2.32 5.75 -52.48 -0.30 2.02 16 30 H 0.14 1.24 7.59 -52.48 -0.40 0.85 16 31 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.11 2.24 6.22 -52.49 -0.33 1.92 16 LS Contribution 299.71 15.07 4.52 4.52 Total: -1.00 -26.84 299.71 -6.53 -33.37 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -1.75 Total: 4.27 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -4.94 Total: -14.38 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.52 Total: -31.69 kcal Atomic # 9 Polarization: -8.82 SS G_CDS: 0.15 Total: -8.67 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -26.84 -6.53 -33.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241095702.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.119 kcal (2) G-P(sol) polarization free energy of solvation -26.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds