Wall clock time and date at job start Tue Mar 31 2020 09:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30800 * 1 3 3 Si 1.86794 * 120.00212 * 2 1 4 4 H 1.48498 * 109.47151 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47132 * 300.00128 * 3 2 1 6 6 H 1.48497 * 109.47378 * 59.99992 * 3 2 1 7 7 C 1.40018 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99721 * 192.39371 * 7 2 1 9 9 C 1.41038 * 120.00103 * 12.39882 * 7 2 1 10 10 C 1.41315 * 120.55397 * 27.75330 * 9 7 2 11 11 C 1.36577 * 118.41761 * 179.72673 * 10 9 7 12 12 C 1.39938 * 119.46817 * 0.25380 * 11 10 9 13 13 C 1.47888 * 119.45143 * 179.97438 * 12 11 10 14 14 C 1.39637 * 120.16632 * 354.66584 * 13 12 11 15 15 C 1.37879 * 119.87716 * 179.97438 * 14 13 12 16 16 C 1.50703 * 119.89536 * 179.97438 * 15 14 13 17 17 F 1.39903 * 109.46848 * 89.99827 * 16 15 14 18 18 F 1.39900 * 109.47628 * 210.00221 * 16 15 14 19 19 F 1.39902 * 109.47189 * 330.00193 * 16 15 14 20 20 C 1.38458 * 120.21308 * 0.02562 * 15 14 13 21 21 C 1.38278 * 120.32451 * 359.97319 * 20 15 14 22 22 C 1.38240 * 120.12088 * 359.74721 * 21 20 15 23 23 F 1.35102 * 120.10774 * 180.27705 * 22 21 20 24 24 N 1.33036 * 121.08979 * 359.97438 * 12 11 10 25 25 C 1.31269 * 121.72499 * 0.02562 * 24 12 11 26 26 H 0.97001 * 120.00006 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.78909 * 359.97438 * 10 9 7 28 28 H 1.08003 * 120.26858 * 180.22889 * 11 10 9 29 29 H 1.07999 * 120.05916 * 359.95112 * 14 13 12 30 30 H 1.07993 * 119.84084 * 180.02562 * 20 15 14 31 31 H 1.08001 * 119.94128 * 180.02562 * 21 20 15 32 32 H 1.07995 * 119.79586 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6176 0.0000 4 1 3.7020 1.3463 -0.0006 5 1 1.8833 2.3964 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0080 -1.2126 0.0005 8 1 3.0691 -1.2234 0.2013 9 6 1.3275 -2.4199 -0.2612 10 6 0.1644 -2.4295 -1.0638 11 6 -0.4568 -3.6239 -1.2938 12 6 0.0673 -4.7923 -0.7294 13 6 -0.6060 -6.0853 -0.9782 14 6 -1.8149 -6.1242 -1.6758 15 6 -2.4372 -7.3330 -1.9049 16 6 -3.7423 -7.3754 -2.6573 17 9 -3.4872 -7.5124 -4.0260 18 9 -4.5017 -8.4632 -2.2132 19 9 -4.4496 -6.1897 -2.4312 20 6 -1.8675 -8.5081 -1.4449 21 6 -0.6706 -8.4796 -0.7531 22 6 -0.0320 -7.2758 -0.5208 23 9 1.1402 -7.2488 0.1503 24 7 1.1611 -4.7591 0.0271 25 6 1.7936 -3.6363 0.2771 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2216 -1.5147 -1.4887 28 1 -1.3456 -3.6663 -1.9059 29 1 -2.2619 -5.2090 -2.0350 30 1 -2.3599 -9.4517 -1.6280 31 1 -0.2315 -9.4000 -0.3974 32 1 2.6787 -3.6453 0.8959 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241095950.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:07 Heat of formation + Delta-G solvation = -148.496208 kcal Electronic energy + Delta-G solvation = -24460.100075 eV Core-core repulsion = 20077.525372 eV Total energy + Delta-G solvation = -4382.574703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.09967 -48.26514 -47.61943 -47.55681 -39.22243 -38.05949 -34.46425 -32.11971 -31.46687 -30.78203 -29.28246 -25.88525 -25.60189 -23.17302 -22.59432 -21.15934 -20.76034 -18.43459 -18.32055 -18.15937 -17.66131 -17.10111 -16.04579 -15.59338 -15.32746 -15.08886 -14.57100 -14.43771 -14.39166 -14.13195 -14.00433 -13.79875 -13.72643 -13.61377 -13.36317 -13.04976 -12.79974 -12.58566 -12.14837 -12.00914 -11.82209 -11.62353 -11.38488 -11.33911 -10.91746 -10.71613 -10.05146 -9.74201 -9.12949 -8.78871 -8.49685 -8.20491 -7.48406 -7.10598 -4.71907 0.95827 1.18043 2.43886 2.72899 2.82688 2.88480 2.93639 2.96721 3.62519 3.66266 3.78649 4.09403 4.39834 4.51841 4.53056 4.85980 4.98308 5.22151 5.39501 5.45925 5.68042 5.89712 6.02685 6.18265 6.23508 6.27349 6.49441 6.62740 6.71166 6.80367 6.96424 7.04910 7.48221 7.61925 7.70840 8.17043 8.36457 8.44598 9.38088 9.76595 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.003584 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.340419 B = 7809.803524 C = 8970.243730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.069 3.931 3 Si 0.920 3.080 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.426 4.426 8 H 0.090 0.910 9 C 0.072 3.928 10 C -0.140 4.140 11 C -0.116 4.116 12 C -0.022 4.022 13 C -0.010 4.010 14 C -0.064 4.064 15 C -0.192 4.192 16 C 0.512 3.488 17 F -0.179 7.179 18 F -0.180 7.180 19 F -0.177 7.177 20 C -0.077 4.077 21 C -0.156 4.156 22 C 0.132 3.868 23 F -0.111 7.111 24 N -0.436 5.436 25 C -0.009 4.009 26 H 0.288 0.712 27 H 0.129 0.871 28 H 0.103 0.897 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.828 -8.869 -3.666 10.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.152 4.152 3 Si 0.743 3.257 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.454 4.454 8 H 0.108 0.892 9 C 0.067 3.933 10 C -0.164 4.164 11 C -0.136 4.136 12 C -0.154 4.154 13 C -0.012 4.012 14 C -0.083 4.083 15 C -0.194 4.194 16 C 0.458 3.542 17 F -0.160 7.160 18 F -0.162 7.162 19 F -0.158 7.158 20 C -0.096 4.096 21 C -0.175 4.175 22 C 0.111 3.889 23 F -0.088 7.088 24 N -0.143 5.143 25 C -0.176 4.176 26 H 0.100 0.900 27 H 0.147 0.853 28 H 0.121 0.879 29 H 0.160 0.840 30 H 0.153 0.847 31 H 0.157 0.843 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.743 -9.474 -3.316 11.102 hybrid contribution -0.143 1.637 -0.321 1.674 sum -4.886 -7.837 -3.637 9.925 Atomic orbital electron populations 1.69760 1.07873 1.30248 1.31993 1.26132 0.94972 1.02120 0.91984 0.86047 0.80906 0.79758 0.78972 1.17959 1.19341 1.19512 1.19795 0.96915 0.90350 1.38376 0.89211 1.18693 0.92121 0.93814 0.88721 1.21333 0.98371 0.96679 1.00044 1.21265 0.99118 0.93349 0.99909 1.18468 0.98184 0.90188 1.08573 1.18724 0.93550 0.92096 0.96785 1.20797 0.93741 0.96814 0.96930 1.19715 0.96100 0.96364 1.07225 1.18272 0.85025 0.73418 0.77471 1.93214 1.94197 1.95516 1.33113 1.93164 1.78240 1.55546 1.89229 1.93196 1.80659 1.47537 1.94430 1.20527 0.95017 0.96899 0.97124 1.20957 0.96564 0.97146 1.02808 1.17900 0.83371 0.93231 0.94395 1.91575 1.43598 1.97085 1.76586 1.67069 1.05607 1.30574 1.11010 1.22546 1.02378 0.87995 1.04690 0.90039 0.85292 0.87933 0.84047 0.84660 0.84266 0.84992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.08 10.89 55.55 0.60 -17.47 16 2 C 0.07 1.54 5.25 -17.32 -0.09 1.45 16 3 Si 0.92 16.67 29.58 -169.99 -5.03 11.64 16 4 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 5 H -0.27 -4.81 7.11 56.52 0.40 -4.40 16 6 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 7 C -0.43 -10.13 9.07 -37.85 -0.34 -10.47 16 8 H 0.09 2.01 7.88 -52.49 -0.41 1.60 16 9 C 0.07 1.77 5.56 -106.64 -0.59 1.17 16 10 C -0.14 -3.36 8.71 -39.01 -0.34 -3.70 16 11 C -0.12 -2.58 9.37 -39.54 -0.37 -2.95 16 12 C -0.02 -0.49 6.73 -82.76 -0.56 -1.04 16 13 C -0.01 -0.19 5.88 -104.82 -0.62 -0.80 16 14 C -0.06 -1.05 8.75 -39.19 -0.34 -1.39 16 15 C -0.19 -2.77 5.45 -104.67 -0.57 -3.34 16 16 C 0.51 6.83 3.36 36.01 0.12 6.95 16 17 F -0.18 -2.40 17.30 2.25 0.04 -2.36 16 18 F -0.18 -2.27 16.45 2.25 0.04 -2.23 16 19 F -0.18 -2.47 16.45 2.25 0.04 -2.44 16 20 C -0.08 -0.99 9.39 -39.49 -0.37 -1.37 16 21 C -0.16 -2.17 10.01 -39.57 -0.40 -2.57 16 22 C 0.13 2.35 7.28 -38.98 -0.28 2.07 16 23 F -0.11 -2.18 15.32 2.25 0.03 -2.14 16 24 N -0.44 -10.46 8.31 -9.11 -0.08 -10.54 16 25 C -0.01 -0.22 10.97 -16.77 -0.18 -0.41 16 26 H 0.29 6.04 8.30 -40.82 -0.34 5.70 16 27 H 0.13 3.13 6.29 -52.49 -0.33 2.80 16 28 H 0.10 1.97 6.19 -52.48 -0.32 1.65 16 29 H 0.14 2.22 5.72 -52.49 -0.30 1.92 16 30 H 0.14 1.36 7.59 -52.49 -0.40 0.97 16 31 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.13 2.91 8.06 -52.49 -0.42 2.49 16 LS Contribution 299.50 15.07 4.51 4.51 Total: -1.00 -25.74 299.50 -6.52 -32.26 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -1.75 Total: 5.17 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -4.94 Total: -16.40 kcal Atomic # 7 Polarization: -28.54 SS G_CDS: 0.53 Total: -28.01 kcal Atomic # 9 Polarization: -9.32 SS G_CDS: 0.15 Total: -9.17 kcal Atomic # 14 Polarization: 16.67 SS G_CDS: -5.03 Total: 11.64 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -25.74 -6.52 -32.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241095950.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.238 kcal (2) G-P(sol) polarization free energy of solvation -25.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds