Wall clock time and date at job start Tue Mar 31 2020 09:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86792 * 120.00373 * 2 1 4 4 H 1.48504 * 109.47320 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47160 * 300.00114 * 3 2 1 6 6 H 1.48503 * 109.47399 * 60.00133 * 3 2 1 7 7 C 1.40020 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99859 * 180.02562 * 7 2 1 9 9 C 1.41370 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.40708 * 119.76899 * 180.02562 * 9 7 2 11 11 C 1.38262 * 119.19632 * 180.02562 * 10 9 7 12 12 C 1.38722 * 118.69054 * 0.02562 * 11 10 9 13 13 C 1.39897 * 119.46223 * 359.97438 * 12 11 10 14 14 C 1.48248 * 119.61062 * 180.02562 * 13 12 11 15 15 C 1.39407 * 120.14036 * 313.07910 * 14 13 12 16 16 C 1.37963 * 119.89976 * 179.97438 * 15 14 13 17 17 C 1.50697 * 119.90943 * 179.97438 * 16 15 14 18 18 F 1.39901 * 109.47500 * 89.99910 * 17 16 15 19 19 F 1.39899 * 109.47146 * 210.00356 * 17 16 15 20 20 F 1.39898 * 109.46865 * 329.99844 * 17 16 15 21 21 C 1.38390 * 120.18348 * 0.02562 * 16 15 14 22 22 C 1.38244 * 120.28601 * 359.97438 * 21 16 15 23 23 C 1.38298 * 120.09772 * 359.97438 * 22 21 16 24 24 F 1.35095 * 120.09062 * 180.02562 * 23 22 21 25 25 N 1.32262 * 120.77789 * 0.27944 * 13 12 11 26 26 H 0.97006 * 119.99330 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.40492 * 359.97438 * 10 9 7 28 28 H 1.07999 * 120.65846 * 179.97438 * 11 10 9 29 29 H 1.07993 * 120.26879 * 179.97438 * 12 11 10 30 30 H 1.08001 * 120.05264 * 0.26037 * 15 14 13 31 31 H 1.07998 * 119.85533 * 179.97438 * 21 16 15 32 32 H 1.07997 * 119.95197 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 3.7016 1.3462 -0.0006 5 1 1.8829 2.3964 -1.2125 6 1 1.8829 2.3964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0001 9 6 1.3006 -2.4369 -0.0005 10 6 2.0090 -3.6527 -0.0005 11 6 1.3057 -4.8431 -0.0011 12 6 -0.0807 -4.7974 -0.0022 13 6 -0.7284 -3.5574 -0.0021 14 6 -2.2099 -3.5048 -0.0027 15 6 -2.9383 -4.3027 -0.8837 16 6 -4.3170 -4.2502 -0.8797 17 6 -5.1046 -5.1122 -1.8324 18 9 -5.3824 -6.3426 -1.2273 19 9 -6.3046 -4.4711 -2.1579 20 9 -4.3579 -5.3230 -2.9965 21 6 -4.9786 -3.4074 -0.0038 22 6 -4.2639 -2.6129 0.8731 23 6 -2.8816 -2.6569 0.8798 24 9 -2.1833 -1.8808 1.7372 25 7 -0.0345 -2.4314 -0.0066 26 1 -0.4849 0.8401 0.0004 27 1 3.0891 -3.6560 -0.0010 28 1 1.8255 -5.7898 -0.0015 29 1 -0.6554 -5.7117 -0.0030 30 1 -2.4244 -4.9643 -1.5653 31 1 -6.0579 -3.3702 -0.0054 32 1 -4.7857 -1.9574 1.5546 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241096071.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:24 Heat of formation + Delta-G solvation = -140.335015 kcal Electronic energy + Delta-G solvation = -24945.499248 eV Core-core repulsion = 20563.278441 eV Total energy + Delta-G solvation = -4382.220807 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.10532 -48.27428 -47.62238 -47.56391 -39.17184 -37.90614 -33.82822 -32.20436 -31.38593 -30.52978 -29.06451 -25.80654 -25.57874 -23.56475 -22.23965 -21.22376 -20.59538 -18.44044 -18.35282 -18.17412 -17.40083 -17.10245 -15.98455 -15.48855 -15.02389 -14.72319 -14.61073 -14.44321 -14.40298 -14.09961 -14.02720 -13.84551 -13.73010 -13.60399 -13.43854 -12.97112 -12.73871 -12.42060 -12.17480 -12.04694 -11.62999 -11.27462 -11.13639 -10.96110 -10.83367 -10.53807 -10.01683 -9.51853 -9.06053 -8.74259 -8.23119 -7.74500 -7.56637 -6.48528 -4.60781 0.99497 1.22141 2.56819 2.72708 2.87718 3.05880 3.09711 3.12004 3.57657 3.78378 3.89659 4.08331 4.48087 4.51343 4.64962 4.88458 4.92994 5.16420 5.39864 5.69577 5.84118 5.91908 6.01259 6.13046 6.19776 6.37642 6.39705 6.62943 6.74720 6.89991 7.02234 7.19489 7.42892 7.59826 7.88798 8.11531 8.55852 8.80567 9.90485 10.22486 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.018328 B = 0.004304 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.386203 B = 6503.561136 C = 7164.057737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.068 3.932 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.427 4.427 8 H 0.086 0.914 9 C 0.254 3.746 10 C -0.267 4.267 11 C -0.058 4.058 12 C -0.297 4.297 13 C 0.166 3.834 14 C -0.042 4.042 15 C -0.031 4.031 16 C -0.209 4.209 17 C 0.514 3.486 18 F -0.179 7.179 19 F -0.180 7.180 20 F -0.177 7.177 21 C -0.051 4.051 22 C -0.168 4.168 23 C 0.172 3.828 24 F -0.105 7.105 25 N -0.458 5.458 26 H 0.273 0.727 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.711 -5.073 -0.597 10.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.327 5.327 2 C -0.158 4.158 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.457 4.457 8 H 0.104 0.896 9 C 0.129 3.871 10 C -0.291 4.291 11 C -0.082 4.082 12 C -0.321 4.321 13 C 0.021 3.979 14 C -0.043 4.043 15 C -0.050 4.050 16 C -0.211 4.211 17 C 0.460 3.540 18 F -0.161 7.161 19 F -0.161 7.161 20 F -0.158 7.158 21 C -0.070 4.070 22 C -0.187 4.187 23 C 0.151 3.849 24 F -0.083 7.083 25 N -0.170 5.170 26 H 0.084 0.916 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.260 -4.075 -0.594 11.055 hybrid contribution 0.832 -0.121 -0.037 0.842 sum -9.428 -4.196 -0.631 10.339 Atomic orbital electron populations 1.70134 1.07100 1.27783 1.27723 1.26073 0.94943 1.01112 0.93704 0.86274 0.80830 0.81169 0.78611 1.18387 1.19811 1.19779 1.19658 0.94334 0.89245 1.42498 0.89606 1.18520 0.87640 0.92141 0.88796 1.21818 0.98911 0.93500 1.14824 1.20775 0.93672 0.96802 0.96929 1.21100 0.94675 0.96196 1.20143 1.19382 0.90154 0.90726 0.97651 1.18815 0.93648 0.96180 0.95695 1.20815 0.91221 0.96658 0.96343 1.19736 0.94522 1.04172 1.02630 1.18213 0.77510 0.78569 0.79711 1.93212 1.94009 1.45614 1.83216 1.93168 1.48065 1.81638 1.93263 1.93196 1.76368 1.95181 1.51053 1.20621 1.00165 0.93318 0.92879 1.21010 0.92071 1.03019 1.02567 1.17925 0.89044 0.89150 0.88762 1.91626 1.79019 1.71324 1.66326 1.68848 1.07571 1.24568 1.16011 0.91592 0.88072 0.88209 0.88493 0.83969 0.84364 0.83923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.35 11.46 55.55 0.64 -17.72 16 2 C 0.07 1.68 5.50 -17.34 -0.10 1.59 16 3 Si 0.91 18.26 29.56 -169.99 -5.02 13.24 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.43 -11.13 9.14 -37.72 -0.34 -11.47 16 8 H 0.09 2.09 7.85 -52.49 -0.41 1.68 16 9 C 0.25 6.78 6.55 -85.01 -0.56 6.23 16 10 C -0.27 -6.38 9.83 -38.64 -0.38 -6.76 16 11 C -0.06 -1.26 10.15 -39.39 -0.40 -1.66 16 12 C -0.30 -6.49 9.47 -38.78 -0.37 -6.85 16 13 C 0.17 3.92 6.14 -82.95 -0.51 3.41 16 14 C -0.04 -0.83 5.62 -104.84 -0.59 -1.42 16 15 C -0.03 -0.52 8.76 -39.25 -0.34 -0.87 16 16 C -0.21 -3.02 5.45 -104.67 -0.57 -3.59 16 17 C 0.51 6.82 3.36 36.00 0.12 6.94 16 18 F -0.18 -2.35 17.30 2.25 0.04 -2.31 16 19 F -0.18 -2.27 16.45 2.25 0.04 -2.23 16 20 F -0.18 -2.47 16.45 2.25 0.04 -2.43 16 21 C -0.05 -0.67 9.39 -39.52 -0.37 -1.04 16 22 C -0.17 -2.44 10.02 -39.56 -0.40 -2.84 16 23 C 0.17 3.27 7.24 -39.05 -0.28 2.98 16 24 F -0.11 -2.31 16.36 2.25 0.04 -2.27 16 25 N -0.46 -12.21 7.17 -7.69 -0.06 -12.27 16 26 H 0.27 6.47 8.29 -40.82 -0.34 6.13 16 27 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 28 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.10 1.85 7.97 -52.49 -0.42 1.43 16 30 H 0.14 2.25 7.50 -52.49 -0.39 1.86 16 31 H 0.14 1.39 7.59 -52.49 -0.40 0.99 16 32 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 306.06 15.07 4.61 4.61 Total: -1.00 -28.21 306.06 -6.79 -35.00 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -2.02 Total: 1.74 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -5.09 Total: -15.37 kcal Atomic # 7 Polarization: -30.57 SS G_CDS: 0.58 Total: -29.98 kcal Atomic # 9 Polarization: -9.39 SS G_CDS: 0.15 Total: -9.24 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.02 Total: 13.24 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.21 -6.79 -35.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241096071.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.337 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds