Wall clock time and date at job start Tue Mar 31 2020 09:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86797 * 120.00096 * 2 1 4 4 H 1.48501 * 109.47201 * 85.01137 * 3 2 1 5 5 H 1.48495 * 109.47093 * 205.01123 * 3 2 1 6 6 H 1.48502 * 109.47368 * 325.01475 * 3 2 1 7 7 C 1.40032 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99699 * 187.20379 * 7 2 1 9 9 C 1.41428 * 119.99997 * 7.19881 * 7 2 1 10 10 C 1.40466 * 119.77415 * 187.17957 * 9 7 2 11 11 C 1.39331 * 118.83037 * 180.02562 * 10 9 7 12 12 C 1.48358 * 120.81953 * 179.97438 * 11 10 9 13 13 C 1.39389 * 120.09718 * 0.02562 * 12 11 10 14 14 C 1.37938 * 119.90287 * 180.02562 * 13 12 11 15 15 C 1.38581 * 120.09543 * 359.97438 * 14 13 12 16 16 F 1.35103 * 119.90311 * 179.97438 * 15 14 13 17 17 C 1.38541 * 120.19379 * 0.02562 * 15 14 13 18 18 C 1.50700 * 119.95053 * 180.02562 * 17 15 14 19 19 F 1.39906 * 109.47162 * 180.02562 * 18 17 15 20 20 F 1.39897 * 109.47502 * 299.99903 * 18 17 15 21 21 F 1.39903 * 109.47163 * 60.00166 * 18 17 15 22 22 C 1.37978 * 120.09846 * 359.72348 * 17 15 14 23 23 C 1.40053 * 118.35624 * 0.02562 * 11 10 9 24 24 C 1.38491 * 119.42007 * 359.97438 * 23 11 10 25 25 N 1.31482 * 121.15185 * 359.71893 * 24 23 11 26 26 H 0.97003 * 119.99942 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.58293 * 359.97438 * 10 9 7 28 28 H 1.07998 * 120.04389 * 359.97438 * 13 12 11 29 29 H 1.07999 * 119.94933 * 179.97438 * 14 13 12 30 30 H 1.08001 * 120.05692 * 180.27818 * 22 17 15 31 31 H 1.07993 * 120.28627 * 180.02562 * 23 11 10 32 32 H 1.08008 * 119.42257 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1073 1.3948 5 1 3.5877 1.4120 -0.5919 6 1 1.4956 2.6200 -0.8028 7 6 2.0075 -1.2127 0.0005 8 1 3.0811 -1.2164 0.1178 9 6 1.3087 -2.4328 -0.1524 10 6 1.9909 -3.6512 -0.0006 11 6 1.2834 -4.8413 -0.1560 12 6 1.9600 -6.1531 -0.0060 13 6 3.3200 -6.2077 0.2947 14 6 3.9452 -7.4295 0.4328 15 6 3.2231 -8.6015 0.2736 16 9 3.8395 -9.7961 0.4093 17 6 1.8712 -8.5519 -0.0253 18 6 1.0911 -9.8298 -0.1967 19 9 -0.2422 -9.5262 -0.4923 20 9 1.6422 -10.5757 -1.2441 21 9 1.1491 -10.5739 0.9866 22 6 1.2366 -7.3341 -0.1601 23 6 -0.0822 -4.7687 -0.4585 24 6 -0.6842 -3.5287 -0.5926 25 7 0.0026 -2.4186 -0.4355 26 1 -0.4850 0.8401 -0.0004 27 1 3.0456 -3.6652 0.2317 28 1 3.8835 -5.2947 0.4185 29 1 4.9989 -7.4727 0.6654 30 1 0.1818 -7.2962 -0.3887 31 1 -0.6607 -5.6717 -0.5853 32 1 -1.7372 -3.4727 -0.8263 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241097206.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:12 Heat of formation + Delta-G solvation = -141.509878 kcal Electronic energy + Delta-G solvation = -24404.088299 eV Core-core repulsion = 20021.816546 eV Total energy + Delta-G solvation = -4382.271753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.27013 -49.10663 -47.70909 -47.68127 -39.52704 -37.91553 -33.90429 -32.70469 -31.97537 -30.17547 -28.72030 -26.40980 -25.64868 -23.40561 -22.86143 -21.12860 -20.79527 -18.67345 -18.57249 -18.46375 -17.62895 -17.01569 -16.21569 -15.80556 -15.76641 -15.07028 -14.74805 -14.55427 -14.54109 -14.11505 -14.10906 -13.92502 -13.84229 -13.75654 -13.37421 -13.21594 -12.93831 -12.90614 -12.42741 -12.11987 -11.79883 -11.44873 -11.32346 -11.14940 -10.81527 -10.51223 -10.01467 -9.74568 -9.44548 -9.25608 -7.84332 -7.75918 -7.71651 -6.60325 -4.67154 0.65307 0.94155 2.53843 2.60016 2.63254 3.01807 3.03855 3.07869 3.56891 3.65390 3.82011 3.84371 4.04449 4.32403 4.60904 4.62406 4.88428 5.04770 5.15298 5.47283 5.74055 5.75554 5.80858 5.90682 6.01408 6.19662 6.32275 6.51247 6.64344 6.74133 6.97580 7.12676 7.32765 7.46295 7.79447 8.07355 8.49224 8.73629 9.93556 10.16644 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.028079 B = 0.003201 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.963624 B = 8745.078179 C = 9558.669212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.071 3.929 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.260 1.260 6 H -0.274 1.274 7 C -0.430 4.430 8 H 0.086 0.914 9 C 0.256 3.744 10 C -0.249 4.249 11 C -0.007 4.007 12 C -0.021 4.021 13 C -0.056 4.056 14 C -0.150 4.150 15 C 0.128 3.872 16 F -0.131 7.131 17 C -0.220 4.220 18 C 0.514 3.486 19 F -0.173 7.173 20 F -0.175 7.175 21 F -0.175 7.175 22 C -0.044 4.044 23 C -0.304 4.304 24 C 0.129 3.871 25 N -0.483 5.483 26 H 0.276 0.724 27 H 0.105 0.895 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.099 0.901 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 -12.070 0.389 12.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.155 4.155 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.184 1.184 6 H -0.199 1.199 7 C -0.461 4.461 8 H 0.104 0.896 9 C 0.131 3.869 10 C -0.272 4.272 11 C -0.013 4.013 12 C -0.021 4.021 13 C -0.074 4.074 14 C -0.169 4.169 15 C 0.109 3.891 16 F -0.110 7.110 17 C -0.223 4.223 18 C 0.460 3.540 19 F -0.154 7.154 20 F -0.156 7.156 21 F -0.156 7.156 22 C -0.062 4.062 23 C -0.327 4.327 24 C -0.037 4.037 25 N -0.195 5.195 26 H 0.087 0.913 27 H 0.123 0.877 28 H 0.166 0.834 29 H 0.164 0.836 30 H 0.169 0.831 31 H 0.117 0.883 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.526 -11.171 0.320 11.719 hybrid contribution 0.701 -0.637 0.101 0.952 sum 4.227 -11.808 0.421 12.549 Atomic orbital electron populations 1.70055 1.07361 1.28270 1.27867 1.26055 0.94878 1.01214 0.93370 0.86304 0.80640 0.80757 0.79132 1.19424 1.18380 1.19926 1.19642 0.94916 0.89575 1.41991 0.89634 1.18530 0.88317 0.91624 0.88384 1.21847 0.99413 0.92517 1.13444 1.18429 0.93628 0.89792 0.99486 1.19112 0.92897 0.93157 0.96979 1.21490 0.94132 0.97736 0.94091 1.21066 1.01110 0.90494 1.04227 1.17277 0.89278 0.81526 1.01047 1.91535 1.82730 1.43619 1.93077 1.19924 0.93817 0.93799 1.14723 1.18049 0.77653 0.84132 0.74153 1.93183 1.35951 1.93018 1.93259 1.93219 1.85377 1.78669 1.58385 1.93221 1.96217 1.78764 1.47444 1.21079 1.01165 0.89198 0.94781 1.21326 0.94422 0.98212 1.18767 1.22453 0.98745 0.88455 0.94001 1.68659 1.07587 1.27332 1.15953 0.91290 0.87726 0.83420 0.83642 0.83127 0.88307 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.16 11.56 55.55 0.64 -17.52 16 2 C 0.07 1.71 5.47 -17.34 -0.09 1.61 16 3 Si 0.91 17.56 29.57 -169.99 -5.03 12.54 16 4 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 5 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.43 -10.77 9.13 -37.70 -0.34 -11.11 16 8 H 0.09 1.97 7.86 -52.49 -0.41 1.56 16 9 C 0.26 6.51 6.52 -85.02 -0.55 5.95 16 10 C -0.25 -5.49 9.22 -38.34 -0.35 -5.84 16 11 C -0.01 -0.15 5.91 -104.64 -0.62 -0.77 16 12 C -0.02 -0.35 5.88 -104.89 -0.62 -0.96 16 13 C -0.06 -0.79 9.44 -39.26 -0.37 -1.16 16 14 C -0.15 -1.84 10.01 -39.56 -0.40 -2.24 16 15 C 0.13 1.74 7.13 -39.34 -0.28 1.46 16 16 F -0.13 -1.78 16.44 2.25 0.04 -1.74 16 17 C -0.22 -3.12 5.37 -104.61 -0.56 -3.69 16 18 C 0.51 7.04 3.02 36.01 0.11 7.14 16 19 F -0.17 -2.32 15.97 2.25 0.04 -2.28 16 20 F -0.18 -2.42 17.04 2.25 0.04 -2.38 16 21 F -0.18 -2.42 17.05 2.25 0.04 -2.38 16 22 C -0.04 -0.66 8.83 -39.26 -0.35 -1.01 16 23 C -0.30 -6.21 9.51 -38.81 -0.37 -6.58 16 24 C 0.13 2.92 11.17 -17.61 -0.20 2.72 16 25 N -0.48 -12.56 7.95 -11.21 -0.09 -12.65 16 26 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 27 H 0.10 2.04 6.33 -52.49 -0.33 1.71 16 28 H 0.15 1.89 6.29 -52.49 -0.33 1.56 16 29 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.15 2.15 5.37 -52.49 -0.28 1.87 16 31 H 0.10 1.74 6.32 -52.49 -0.33 1.41 16 32 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 300.10 15.07 4.52 4.52 Total: -1.00 -26.95 300.10 -6.46 -33.41 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -1.67 Total: 2.94 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -4.99 Total: -14.46 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.55 Total: -30.16 kcal Atomic # 9 Polarization: -8.94 SS G_CDS: 0.15 Total: -8.79 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -26.95 -6.46 -33.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241097206.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.095 kcal (2) G-P(sol) polarization free energy of solvation -26.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds