Wall clock time and date at job start Tue Mar 31 2020 09:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30698 * 1 3 3 Si 1.86797 * 119.99902 * 2 1 4 4 H 1.48501 * 109.47140 * 269.99501 * 3 2 1 5 5 H 1.48495 * 109.47437 * 29.99484 * 3 2 1 6 6 H 1.48507 * 109.47192 * 149.99836 * 3 2 1 7 7 C 1.40147 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99622 * 180.02562 * 7 2 1 9 9 C 1.40790 * 120.00396 * 0.02562 * 7 2 1 10 10 N 1.33702 * 119.93800 * 0.02562 * 9 7 2 11 11 C 1.31274 * 121.63478 * 179.97438 * 10 9 7 12 12 C 1.39070 * 121.34914 * 359.97438 * 11 10 9 13 13 C 1.38366 * 119.72924 * 359.97438 * 12 11 10 14 14 C 1.39714 * 118.47276 * 0.02562 * 13 12 11 15 15 C 1.47763 * 120.65349 * 180.02562 * 14 13 12 16 16 C 1.39703 * 120.17047 * 64.97130 * 15 14 13 17 17 C 1.37863 * 119.87357 * 180.02562 * 16 15 14 18 18 C 1.50696 * 119.89616 * 179.97438 * 17 16 15 19 19 F 1.39904 * 109.47271 * 89.99665 * 18 17 16 20 20 F 1.39895 * 109.47163 * 209.99976 * 18 17 16 21 21 F 1.39899 * 109.47102 * 329.99857 * 18 17 16 22 22 C 1.38477 * 120.21018 * 0.02562 * 17 16 15 23 23 C 1.38300 * 120.34579 * 359.97438 * 22 17 16 24 24 C 1.38214 * 120.12317 * 359.76045 * 23 22 17 25 25 F 1.35106 * 120.11010 * 180.27504 * 24 23 22 26 26 H 0.97002 * 120.00046 * 0.02562 * 1 2 3 27 27 H 1.08007 * 119.32934 * 179.72132 * 11 10 9 28 28 H 1.07997 * 120.13628 * 179.97438 * 12 11 10 29 29 H 1.07996 * 120.76591 * 180.02562 * 13 12 11 30 30 H 1.08008 * 120.06405 * 359.97438 * 16 15 14 31 31 H 1.08001 * 119.82825 * 179.97438 * 22 17 16 32 32 H 1.08002 * 119.93656 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4885 2.0464 -1.4001 5 1 1.4384 2.6527 0.6999 6 1 3.5385 1.4402 0.7001 7 6 2.0076 -1.2138 0.0005 8 1 3.0877 -1.2137 0.0010 9 6 1.3037 -2.4330 0.0005 10 7 -0.0333 -2.4316 -0.0005 11 6 -0.7230 -3.5485 -0.0010 12 6 -0.0927 -4.7882 -0.0011 13 6 1.2894 -4.8551 -0.0011 14 6 2.0141 -3.6607 -0.0005 15 6 3.4917 -3.6760 -0.0010 16 6 4.1881 -4.1934 -1.0960 17 6 5.5666 -4.2052 -1.0898 18 6 6.3183 -4.7638 -2.2705 19 9 6.5636 -3.7413 -3.1934 20 9 7.5345 -5.3021 -1.8367 21 9 5.5546 -5.7665 -2.8775 22 6 6.2628 -3.7063 -0.0017 23 6 5.5824 -3.1920 1.0870 24 6 4.2005 -3.1683 1.0933 25 9 3.5362 -2.6607 2.1546 26 1 -0.4850 0.8401 -0.0004 27 1 -1.8022 -3.5039 0.0027 28 1 -0.6794 -5.6948 -0.0011 29 1 1.7962 -5.8088 -0.0015 30 1 3.6475 -4.5843 -1.9455 31 1 7.3427 -3.7189 -0.0032 32 1 6.1321 -2.8042 1.9320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241099006.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:08 Heat of formation + Delta-G solvation = -141.456071 kcal Electronic energy + Delta-G solvation = -25267.695601 eV Core-core repulsion = 20885.426181 eV Total energy + Delta-G solvation = -4382.269420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.05038 -48.31096 -47.57890 -47.49783 -39.09070 -37.85973 -33.80969 -32.56962 -31.29763 -30.40812 -28.83478 -25.85275 -25.57192 -23.39002 -21.95671 -21.49874 -20.52773 -18.37729 -18.29693 -17.97287 -17.62306 -17.08280 -16.01508 -15.68113 -15.00267 -14.86676 -14.47634 -14.39192 -14.33992 -14.19476 -13.98928 -13.78518 -13.67883 -13.51763 -13.37733 -12.88689 -12.74686 -12.29554 -12.09679 -12.04590 -11.63291 -11.33609 -11.24880 -11.15977 -10.84182 -10.50544 -10.09341 -9.53006 -8.90949 -8.65020 -8.23795 -7.74467 -7.58680 -6.58177 -4.70226 1.09428 1.38845 2.55164 2.77334 2.84335 3.00481 3.03580 3.12576 3.63685 3.82742 3.85443 4.15631 4.55173 4.57229 4.61826 4.97561 5.08948 5.38530 5.50618 5.71133 5.95401 5.96313 6.03163 6.13911 6.29812 6.34125 6.45345 6.55563 6.72841 6.91524 7.04470 7.17999 7.39287 7.55778 7.85731 8.04820 8.45974 8.74228 9.92631 10.11860 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.005501 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.991535 B = 5088.760517 C = 5916.965411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.703 5.703 2 C 0.069 3.931 3 Si 0.904 3.096 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.410 4.410 8 H 0.082 0.918 9 C 0.275 3.725 10 N -0.479 5.479 11 C 0.138 3.862 12 C -0.321 4.321 13 C -0.024 4.024 14 C -0.255 4.255 15 C -0.002 4.002 16 C -0.048 4.048 17 C -0.201 4.201 18 C 0.512 3.488 19 F -0.178 7.178 20 F -0.182 7.182 21 F -0.178 7.178 22 C -0.067 4.067 23 C -0.162 4.162 24 C 0.140 3.860 25 F -0.118 7.118 26 H 0.277 0.723 27 H 0.121 0.879 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.746 -5.027 -0.927 11.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.158 4.158 3 Si 0.727 3.273 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.439 4.439 8 H 0.100 0.900 9 C 0.152 3.848 10 N -0.190 5.190 11 C -0.031 4.031 12 C -0.344 4.344 13 C -0.048 4.048 14 C -0.260 4.260 15 C -0.004 4.004 16 C -0.067 4.067 17 C -0.202 4.202 18 C 0.458 3.542 19 F -0.159 7.159 20 F -0.163 7.163 21 F -0.160 7.160 22 C -0.085 4.085 23 C -0.181 4.181 24 C 0.120 3.880 25 F -0.096 7.096 26 H 0.088 0.912 27 H 0.138 0.862 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.150 -4.010 -0.912 10.032 hybrid contribution 0.766 -0.157 -0.037 0.783 sum 9.917 -4.167 -0.949 10.798 Atomic orbital electron populations 1.70094 1.07283 1.28300 1.26648 1.26120 0.94939 1.01310 0.93456 0.86355 0.80720 0.80602 0.79577 1.19065 1.19761 1.18238 1.19571 0.94312 0.89454 1.40574 0.89952 1.18452 0.87995 0.90571 0.87803 1.68777 1.06853 1.26580 1.16835 1.22656 0.98935 0.88816 0.92728 1.21211 0.94433 0.97984 1.20803 1.20840 0.93861 0.95400 0.94694 1.19037 0.89170 0.95043 1.22764 1.18711 0.94283 0.96035 0.91380 1.20989 0.91234 0.96598 0.97866 1.19789 0.94837 1.09993 0.95627 1.18282 0.77075 0.75692 0.83112 1.93221 1.94503 1.59536 1.68689 1.93158 1.46779 1.86739 1.89620 1.93182 1.75530 1.62281 1.84967 1.20559 0.99908 0.96469 0.91579 1.20954 0.92350 1.04364 1.00394 1.18151 0.89549 0.95463 0.84836 1.91553 1.80979 1.83792 1.53326 0.91207 0.86154 0.88426 0.88407 0.84387 0.84655 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.05 11.46 55.56 0.64 -17.41 16 2 C 0.07 1.70 5.50 -17.32 -0.10 1.61 16 3 Si 0.90 18.22 29.56 -169.99 -5.02 13.20 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.41 -10.53 8.03 -37.90 -0.30 -10.83 16 8 H 0.08 2.03 6.02 -52.48 -0.32 1.72 16 9 C 0.27 7.16 6.46 -84.71 -0.55 6.62 16 10 N -0.48 -12.73 7.85 -10.91 -0.09 -12.81 16 11 C 0.14 3.21 11.17 -17.48 -0.20 3.01 16 12 C -0.32 -6.85 10.10 -39.23 -0.40 -7.25 16 13 C -0.02 -0.50 9.88 -38.98 -0.39 -0.89 16 14 C -0.26 -5.88 5.07 -104.08 -0.53 -6.41 16 15 C 0.00 -0.05 4.48 -104.83 -0.47 -0.52 16 16 C -0.05 -0.84 9.10 -39.17 -0.36 -1.20 16 17 C -0.20 -3.04 5.45 -104.67 -0.57 -3.61 16 18 C 0.51 7.14 3.36 36.00 0.12 7.27 16 19 F -0.18 -2.58 17.30 2.25 0.04 -2.54 16 20 F -0.18 -2.35 16.45 2.25 0.04 -2.31 16 21 F -0.18 -2.54 16.45 2.25 0.04 -2.50 16 22 C -0.07 -0.92 9.39 -39.47 -0.37 -1.29 16 23 C -0.16 -2.42 10.01 -39.57 -0.40 -2.81 16 24 C 0.14 2.64 5.98 -38.96 -0.23 2.40 16 25 F -0.12 -2.49 16.13 2.25 0.04 -2.45 16 26 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 27 H 0.12 2.46 8.06 -52.48 -0.42 2.03 16 28 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.14 2.31 7.59 -52.48 -0.40 1.91 16 31 H 0.14 1.46 7.59 -52.49 -0.40 1.07 16 32 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 302.22 15.07 4.55 4.55 Total: -1.00 -27.50 302.22 -6.43 -33.93 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -1.94 Total: 2.25 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -4.73 Total: -13.90 kcal Atomic # 7 Polarization: -30.78 SS G_CDS: 0.55 Total: -30.23 kcal Atomic # 9 Polarization: -9.96 SS G_CDS: 0.15 Total: -9.81 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.20 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.50 -6.43 -33.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241099006.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.526 kcal (2) G-P(sol) polarization free energy of solvation -27.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds