Wall clock time and date at job start Tue Mar 31 2020 09:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48498 * 109.46646 * 240.00090 * 3 2 1 5 5 H 1.48497 * 109.46782 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00057 * 3 2 1 7 7 C 1.40037 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99630 * 179.97438 * 7 2 1 9 9 C 1.41430 * 120.00173 * 0.27906 * 7 2 1 10 10 C 1.40461 * 119.77883 * 179.45022 * 9 7 2 11 11 C 1.39327 * 118.83045 * 179.73341 * 10 9 7 12 12 C 1.48342 * 120.82205 * 180.23367 * 11 10 9 13 13 C 1.39363 * 120.13660 * 130.02149 * 12 11 10 14 14 C 1.37978 * 119.90274 * 179.74834 * 13 12 11 15 15 C 1.50706 * 119.91076 * 180.28152 * 14 13 12 16 16 F 1.39900 * 109.47169 * 180.25389 * 15 14 13 17 17 F 1.39902 * 109.46866 * 300.25233 * 15 14 13 18 18 F 1.39895 * 109.47090 * 60.25040 * 15 14 13 19 19 C 1.38370 * 120.17714 * 0.52838 * 14 13 12 20 20 C 1.38241 * 120.27642 * 359.72767 * 19 14 13 21 21 C 1.38288 * 120.09216 * 0.02562 * 20 19 14 22 22 F 1.35102 * 120.08721 * 179.97438 * 21 20 19 23 23 C 1.40062 * 118.35569 * 0.52821 * 11 10 9 24 24 C 1.38481 * 119.42197 * 359.73312 * 23 11 10 25 25 N 1.31487 * 121.14986 * 359.97438 * 24 23 11 26 26 H 0.96991 * 119.99866 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.57967 * 359.97438 * 10 9 7 28 28 H 1.08003 * 120.04529 * 359.97438 * 13 12 11 29 29 H 1.08001 * 119.85887 * 179.69702 * 19 14 13 30 30 H 1.08003 * 119.95269 * 179.97438 * 20 19 14 31 31 H 1.08003 * 120.28788 * 179.70778 * 23 11 10 32 32 H 1.07996 * 119.42959 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0877 -1.2127 0.0001 9 6 1.3005 -2.4376 -0.0049 10 6 2.0076 -3.6512 -0.0160 11 6 1.2912 -4.8462 -0.0155 12 6 1.9929 -6.1531 -0.0218 13 6 1.6453 -7.1384 0.9005 14 6 2.2977 -8.3541 0.8869 15 6 1.9176 -9.4220 1.8801 16 9 2.7147 -10.5535 1.6762 17 9 2.1135 -8.9415 3.1793 18 9 0.5717 -9.7623 1.7068 19 6 3.3034 -8.5937 -0.0328 20 6 3.6578 -7.6197 -0.9475 21 6 3.0080 -6.3990 -0.9473 22 9 3.3547 -5.4470 -1.8410 23 6 -0.1080 -4.7829 -0.0152 24 6 -0.7331 -3.5473 -0.0099 25 7 -0.0360 -2.4324 -0.0045 26 1 -0.4849 0.8400 -0.0004 27 1 3.0875 -3.6579 -0.0209 28 1 0.8640 -6.9518 1.6224 29 1 3.8139 -9.5454 -0.0356 30 1 4.4438 -7.8121 -1.6628 31 1 -0.6943 -5.6900 -0.0196 32 1 -1.8120 -3.4983 -0.0101 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241099647.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:16 Heat of formation + Delta-G solvation = -141.334411 kcal Electronic energy + Delta-G solvation = -24466.679129 eV Core-core repulsion = 20084.414985 eV Total energy + Delta-G solvation = -4382.264144 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.24145 -48.76012 -47.77671 -47.67741 -39.37077 -37.97243 -33.90528 -32.66018 -31.62142 -30.09921 -29.07790 -26.00957 -25.67689 -23.60991 -22.47892 -21.30151 -20.76515 -18.55319 -18.54857 -18.48756 -17.45572 -17.10547 -16.21641 -15.69803 -15.42460 -14.80852 -14.59661 -14.56097 -14.47985 -14.19050 -14.14311 -13.97744 -13.85616 -13.80536 -13.61157 -13.22257 -12.84967 -12.58175 -12.37766 -12.19398 -11.76744 -11.44193 -11.22891 -11.02983 -10.88980 -10.50884 -10.08600 -9.54682 -9.23009 -9.03584 -7.99198 -7.76130 -7.68212 -6.48794 -4.61880 0.72117 1.00290 2.54310 2.66376 2.70343 3.04694 3.06803 3.13048 3.38133 3.61849 3.89084 3.92732 4.20520 4.34575 4.62053 4.69726 4.72624 5.00439 5.17039 5.59473 5.70218 5.79807 5.91880 5.97823 5.98600 6.12093 6.35078 6.58557 6.66030 6.74960 7.02469 7.19325 7.38851 7.50919 7.85188 8.13093 8.54757 8.80852 10.00660 10.23230 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.022938 B = 0.003455 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.397350 B = 8102.051839 C = 8585.629656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.427 4.427 8 H 0.084 0.916 9 C 0.254 3.746 10 C -0.240 4.240 11 C -0.013 4.013 12 C -0.048 4.048 13 C -0.032 4.032 14 C -0.200 4.200 15 C 0.513 3.487 16 F -0.180 7.180 17 F -0.176 7.176 18 F -0.176 7.176 19 C -0.058 4.058 20 C -0.158 4.158 21 C 0.140 3.860 22 F -0.120 7.120 23 C -0.301 4.301 24 C 0.127 3.873 25 N -0.480 5.480 26 H 0.275 0.725 27 H 0.101 0.899 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.097 0.903 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.647 -14.265 0.860 15.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.157 4.157 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.458 4.458 8 H 0.102 0.898 9 C 0.130 3.870 10 C -0.263 4.263 11 C -0.019 4.019 12 C -0.049 4.049 13 C -0.051 4.051 14 C -0.201 4.201 15 C 0.459 3.541 16 F -0.161 7.161 17 F -0.157 7.157 18 F -0.157 7.157 19 C -0.076 4.076 20 C -0.176 4.176 21 C 0.120 3.880 22 F -0.098 7.098 23 C -0.324 4.324 24 C -0.038 4.038 25 N -0.193 5.193 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.162 0.838 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.115 0.885 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.052 -13.267 0.856 13.898 hybrid contribution 0.787 -0.209 -0.010 0.814 sum 4.839 -13.476 0.846 14.343 Atomic orbital electron populations 1.70113 1.07215 1.28079 1.27988 1.26076 0.94936 1.01141 0.93573 0.86363 0.80100 0.80285 0.79985 1.18853 1.20121 1.18850 1.19622 0.94317 0.89354 1.42546 0.89757 1.18527 0.88320 0.91567 0.88587 1.21802 0.98512 0.92344 1.13609 1.18320 0.93343 0.89393 1.00866 1.19088 0.95448 0.95571 0.94757 1.20860 0.97466 0.89922 0.96827 1.19863 1.03773 0.95541 1.00964 1.18200 0.74656 0.80903 0.80341 1.93147 1.74008 1.54060 1.94872 1.93229 1.94784 1.87959 1.39736 1.93222 1.34200 1.93010 1.95306 1.20737 0.94712 0.99498 0.92653 1.21017 1.02494 0.92257 1.01869 1.17982 0.94889 0.86442 0.88676 1.91575 1.90502 1.62703 1.64982 1.21258 0.92711 0.98257 1.20167 1.22463 0.98917 0.88468 0.93979 1.68738 1.07192 1.26812 1.16508 0.91404 0.88090 0.83848 0.83849 0.83691 0.88454 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.66 11.46 55.55 0.64 -18.02 16 2 C 0.07 1.71 5.50 -17.34 -0.10 1.62 16 3 Si 0.91 18.25 29.56 -169.99 -5.02 13.23 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.43 -11.25 9.14 -37.69 -0.34 -11.60 16 8 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 9 C 0.25 6.83 6.55 -85.02 -0.56 6.27 16 10 C -0.24 -5.76 8.70 -38.34 -0.33 -6.09 16 11 C -0.01 -0.28 5.33 -104.65 -0.56 -0.84 16 12 C -0.05 -0.84 5.52 -104.83 -0.58 -1.42 16 13 C -0.03 -0.49 9.09 -39.26 -0.36 -0.84 16 14 C -0.20 -2.56 5.37 -104.67 -0.56 -3.12 16 15 C 0.51 6.17 3.31 36.01 0.12 6.29 16 16 F -0.18 -1.98 15.96 2.25 0.04 -1.95 16 17 F -0.18 -2.25 17.23 2.25 0.04 -2.21 16 18 F -0.18 -2.21 17.24 2.25 0.04 -2.17 16 19 C -0.06 -0.65 9.42 -39.53 -0.37 -1.02 16 20 C -0.16 -1.91 10.02 -39.56 -0.40 -2.31 16 21 C 0.14 2.24 7.18 -39.08 -0.28 1.96 16 22 F -0.12 -2.14 15.95 2.25 0.04 -2.10 16 23 C -0.30 -6.47 9.67 -38.81 -0.38 -6.84 16 24 C 0.13 2.99 11.17 -17.61 -0.20 2.80 16 25 N -0.48 -12.96 7.85 -11.21 -0.09 -13.05 16 26 H 0.27 6.51 8.29 -40.82 -0.34 6.17 16 27 H 0.10 2.31 7.84 -52.49 -0.41 1.90 16 28 H 0.14 2.08 8.06 -52.48 -0.42 1.65 16 29 H 0.14 1.21 7.14 -52.49 -0.37 0.83 16 30 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 32 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 305.89 15.07 4.61 4.61 Total: -1.00 -28.20 305.89 -6.63 -34.82 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -2.02 Total: 1.99 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -4.89 Total: -15.15 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: 0.55 Total: -31.07 kcal Atomic # 9 Polarization: -8.58 SS G_CDS: 0.15 Total: -8.43 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.02 Total: 13.23 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.20 -6.63 -34.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241099647.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.510 kcal (2) G-P(sol) polarization free energy of solvation -28.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds