Wall clock time and date at job start Tue Mar 31 2020 09:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30777 * 1 3 3 Si 1.86800 * 119.99993 * 2 1 4 4 H 1.48495 * 109.47362 * 270.37476 * 3 2 1 5 5 H 1.48504 * 109.47234 * 30.37552 * 3 2 1 6 6 H 1.48500 * 109.47503 * 150.37037 * 3 2 1 7 7 C 1.40060 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00188 * 343.02335 * 7 2 1 9 9 C 1.40873 * 119.99837 * 163.02073 * 7 2 1 10 10 C 1.41111 * 120.72203 * 330.75583 * 9 7 2 11 11 C 1.36890 * 118.39943 * 179.97438 * 10 9 7 12 12 C 1.38871 * 119.80536 * 0.02562 * 11 10 9 13 13 N 1.31746 * 121.50931 * 359.73924 * 12 11 10 14 14 C 1.32612 * 121.71227 * 0.53034 * 13 12 11 15 15 C 1.47743 * 119.99195 * 179.75279 * 14 13 12 16 16 C 1.39700 * 120.16962 * 130.18055 * 15 14 13 17 17 C 1.37865 * 119.87460 * 179.72283 * 16 15 14 18 18 C 1.38471 * 120.21198 * 0.02562 * 17 16 15 19 19 C 1.38288 * 120.34318 * 359.97081 * 18 17 16 20 20 C 1.50702 * 119.93680 * 180.02562 * 19 18 17 21 21 F 1.39896 * 109.46974 * 0.02562 * 20 19 18 22 22 F 1.39891 * 109.47303 * 120.00153 * 20 19 18 23 23 F 1.39898 * 109.46797 * 240.00308 * 20 19 18 24 24 C 1.38226 * 120.12569 * 0.04971 * 19 18 17 25 25 F 1.35104 * 120.10782 * 179.97438 * 24 19 18 26 26 H 0.97002 * 119.99811 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.80498 * 359.95867 * 10 9 7 28 28 H 1.07995 * 120.09530 * 180.02562 * 11 10 9 29 29 H 1.07998 * 119.24743 * 180.02562 * 12 11 10 30 30 H 1.08007 * 120.06378 * 359.70107 * 16 15 14 31 31 H 1.07998 * 119.89482 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.82890 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.4814 2.0510 -1.4000 5 1 1.4432 2.6504 0.7080 6 1 3.5432 1.4380 0.6922 7 6 2.0081 -1.2129 0.0005 8 1 1.5034 -2.1278 0.2740 9 6 3.3708 -1.2396 -0.3557 10 6 3.8982 -0.2932 -1.2598 11 6 5.2291 -0.3627 -1.5723 12 6 6.0216 -1.3499 -1.0013 13 7 5.5242 -2.2279 -0.1544 14 6 4.2427 -2.2191 0.1864 15 6 3.7240 -3.2253 1.1359 16 6 2.9570 -2.8257 2.2329 17 6 2.4713 -3.7703 3.1119 18 6 2.7418 -5.1133 2.9110 19 6 3.5001 -5.5188 1.8279 20 6 3.7885 -6.9830 1.6178 21 9 3.1880 -7.7277 2.6385 22 9 3.2734 -7.3870 0.3815 23 9 5.1714 -7.1934 1.6380 24 6 3.9945 -4.5837 0.9381 25 9 4.7357 -4.9802 -0.1196 26 1 -0.4850 0.8401 0.0004 27 1 3.2670 0.4675 -1.6950 28 1 5.6616 0.3481 -2.2608 29 1 7.0706 -1.3962 -1.2539 30 1 2.7451 -1.7787 2.3924 31 1 1.8779 -3.4617 3.9599 32 1 2.3579 -5.8481 3.6032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241155770.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:31 Heat of formation + Delta-G solvation = -146.887319 kcal Electronic energy + Delta-G solvation = -25483.997584 eV Core-core repulsion = 21101.492648 eV Total energy + Delta-G solvation = -4382.504937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.01367 -48.45330 -47.47830 -47.41066 -39.28539 -38.09108 -34.27257 -32.60624 -31.60231 -30.95912 -29.07563 -25.95351 -25.63593 -23.42804 -22.09685 -21.60474 -20.69269 -18.31751 -18.30972 -18.15726 -17.74243 -16.85896 -16.26009 -15.90398 -15.32539 -15.13400 -14.66030 -14.56029 -14.26808 -14.26083 -13.88204 -13.80828 -13.60066 -13.59827 -13.44322 -12.92671 -12.69165 -12.58640 -12.37803 -12.19148 -11.98513 -11.63186 -11.44845 -11.05638 -10.91765 -10.45169 -10.14369 -9.70949 -9.07581 -8.67563 -8.52862 -8.29738 -7.74280 -7.30212 -4.83190 1.13976 1.33476 2.23223 2.48662 2.82223 2.86519 2.97363 3.06446 3.67237 3.74482 3.86054 4.13973 4.27994 4.50690 4.59935 5.01630 5.09334 5.23650 5.35278 5.51385 5.83779 5.88649 5.91926 6.09262 6.17549 6.27613 6.40831 6.56935 6.63635 6.70532 6.88513 7.06266 7.23885 7.35723 7.57394 7.95114 8.18683 8.36894 9.19455 9.68684 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.019064 B = 0.005162 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.352739 B = 5423.420688 C = 6323.446919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.084 3.916 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.245 1.245 7 C -0.423 4.423 8 H 0.102 0.898 9 C 0.067 3.933 10 C -0.208 4.208 11 C -0.114 4.114 12 C -0.036 4.036 13 N -0.432 5.432 14 C 0.017 3.983 15 C -0.010 4.010 16 C -0.031 4.031 17 C -0.137 4.137 18 C -0.064 4.064 19 C -0.233 4.233 20 C 0.515 3.485 21 F -0.179 7.179 22 F -0.176 7.176 23 F -0.176 7.176 24 C 0.155 3.845 25 F -0.119 7.119 26 H 0.292 0.708 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.148 0.852 31 H 0.136 0.864 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.344 -4.463 5.060 7.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.139 4.139 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.168 1.168 7 C -0.451 4.451 8 H 0.120 0.880 9 C 0.062 3.938 10 C -0.233 4.233 11 C -0.134 4.134 12 C -0.196 4.196 13 N -0.139 5.139 14 C -0.122 4.122 15 C -0.012 4.012 16 C -0.050 4.050 17 C -0.155 4.155 18 C -0.082 4.082 19 C -0.236 4.236 20 C 0.461 3.539 21 F -0.160 7.160 22 F -0.157 7.157 23 F -0.157 7.157 24 C 0.134 3.866 25 F -0.097 7.097 26 H 0.103 0.897 27 H 0.132 0.868 28 H 0.125 0.875 29 H 0.147 0.853 30 H 0.165 0.835 31 H 0.154 0.846 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.644 -5.048 5.364 7.826 hybrid contribution -0.197 1.121 -0.861 1.427 sum 2.447 -3.927 4.503 6.457 Atomic orbital electron populations 1.69643 1.08136 1.31051 1.31572 1.26263 0.94817 1.01907 0.90935 0.86341 0.80905 0.79441 0.79592 1.19085 1.21189 1.16843 1.19525 0.92159 0.96361 1.37010 0.88028 1.18356 0.93744 0.91208 0.90501 1.21217 0.95768 1.03659 1.02699 1.21414 0.94723 0.98255 0.99043 1.21713 0.99003 0.96717 1.02130 1.67081 1.13761 1.22351 1.10698 1.19070 0.89307 1.00755 1.03104 1.18432 0.97988 0.89378 0.95406 1.21535 0.91858 1.01248 0.90382 1.21047 1.01850 0.91870 1.00762 1.20778 0.95393 0.97162 0.94903 1.19835 1.10853 0.90498 1.02386 1.18094 0.74339 0.87587 0.73886 1.93132 1.83656 1.79165 1.60086 1.93219 1.86798 1.92035 1.43639 1.93217 1.30536 1.95827 1.96137 1.17418 0.92565 0.91892 0.84680 1.91538 1.73564 1.90981 1.53643 0.89725 0.86770 0.87500 0.85324 0.83475 0.84575 0.84353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.35 13.93 55.55 0.77 -17.57 16 2 C 0.08 1.92 5.44 -17.32 -0.09 1.82 16 3 Si 0.91 18.39 24.53 -169.99 -4.17 14.22 16 4 H -0.26 -5.22 6.46 56.52 0.37 -4.85 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.25 -5.12 6.99 56.52 0.40 -4.73 16 7 C -0.42 -10.09 7.55 -37.90 -0.29 -10.38 16 8 H 0.10 2.55 6.94 -52.48 -0.36 2.18 16 9 C 0.07 1.58 5.13 -106.41 -0.55 1.04 16 10 C -0.21 -4.65 7.31 -38.98 -0.28 -4.93 16 11 C -0.11 -2.33 10.03 -39.84 -0.40 -2.73 16 12 C -0.04 -0.76 11.16 -17.35 -0.19 -0.95 16 13 N -0.43 -10.01 9.83 -9.18 -0.09 -10.10 16 14 C 0.02 0.40 6.13 -82.24 -0.50 -0.10 16 15 C -0.01 -0.21 5.08 -104.84 -0.53 -0.75 16 16 C -0.03 -0.56 8.03 -39.17 -0.31 -0.88 16 17 C -0.14 -2.00 10.03 -39.63 -0.40 -2.39 16 18 C -0.06 -0.92 9.43 -39.48 -0.37 -1.30 16 19 C -0.23 -3.98 5.37 -104.61 -0.56 -4.55 16 20 C 0.52 8.28 3.02 36.01 0.11 8.38 16 21 F -0.18 -2.53 15.96 2.25 0.04 -2.49 16 22 F -0.18 -2.98 17.05 2.25 0.04 -2.94 16 23 F -0.18 -2.92 17.05 2.25 0.04 -2.88 16 24 C 0.16 3.11 7.08 -38.96 -0.28 2.84 16 25 F -0.12 -2.57 15.67 2.25 0.04 -2.54 16 26 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 27 H 0.11 2.47 4.51 -52.49 -0.24 2.23 16 28 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.13 2.32 8.06 -52.49 -0.42 1.89 16 30 H 0.15 2.63 7.28 -52.48 -0.38 2.25 16 31 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.14 1.59 7.14 -52.49 -0.37 1.21 16 LS Contribution 293.69 15.07 4.43 4.43 Total: -1.00 -25.99 293.69 -5.37 -31.36 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -1.80 Total: 3.39 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -4.65 Total: -14.87 kcal Atomic # 7 Polarization: -28.36 SS G_CDS: 0.68 Total: -27.67 kcal Atomic # 9 Polarization: -11.00 SS G_CDS: 0.15 Total: -10.85 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.17 Total: 14.22 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -25.99 -5.37 -31.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241155770.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.532 kcal (2) G-P(sol) polarization free energy of solvation -25.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds