Wall clock time and date at job start Tue Mar 31 2020 09:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48498 * 109.46646 * 240.00090 * 3 2 1 5 5 H 1.48497 * 109.46782 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00057 * 3 2 1 7 7 C 1.40037 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99630 * 179.97438 * 7 2 1 9 9 C 1.41430 * 120.00173 * 0.27906 * 7 2 1 10 10 C 1.40461 * 119.77883 * 179.45022 * 9 7 2 11 11 C 1.39327 * 118.83045 * 179.73341 * 10 9 7 12 12 C 1.48342 * 120.82205 * 180.23367 * 11 10 9 13 13 C 1.39353 * 120.13992 * 310.02929 * 12 11 10 14 14 C 1.37988 * 119.90312 * 179.69665 * 13 12 11 15 15 C 1.38367 * 120.17674 * 0.57123 * 14 13 12 16 16 C 1.38244 * 120.27571 * 359.72283 * 15 14 13 17 17 C 1.50706 * 119.95182 * 179.97438 * 16 15 14 18 18 F 1.39892 * 109.47081 * 359.97438 * 17 16 15 19 19 F 1.39899 * 109.46770 * 119.98179 * 17 16 15 20 20 F 1.39895 * 109.46996 * 239.98137 * 17 16 15 21 21 C 1.38293 * 120.09496 * 359.97438 * 16 15 14 22 22 F 1.35097 * 120.08875 * 179.97438 * 21 16 15 23 23 C 1.40062 * 118.35569 * 0.52821 * 11 10 9 24 24 C 1.38481 * 119.42197 * 359.73312 * 23 11 10 25 25 N 1.31487 * 121.14986 * 359.97438 * 24 23 11 26 26 H 0.96991 * 119.99866 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.57967 * 359.97438 * 10 9 7 28 28 H 1.07998 * 120.04698 * 359.96828 * 13 12 11 29 29 H 1.08003 * 119.90595 * 180.27633 * 14 13 12 30 30 H 1.07997 * 119.86231 * 179.69625 * 15 14 13 31 31 H 1.08003 * 120.28788 * 179.70778 * 23 11 10 32 32 H 1.07996 * 119.42941 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0877 -1.2127 0.0001 9 6 1.3005 -2.4376 -0.0049 10 6 2.0076 -3.6512 -0.0160 11 6 1.2912 -4.8462 -0.0155 12 6 1.9929 -6.1531 -0.0218 13 6 3.0026 -6.4007 -0.9498 14 6 3.6564 -7.6158 -0.9473 15 6 3.3042 -8.5933 -0.0334 16 6 2.2995 -8.3578 0.8865 17 6 1.9214 -9.4277 1.8782 18 9 2.7195 -10.5579 1.6717 19 9 2.1176 -8.9491 3.1780 20 9 0.5758 -9.7693 1.7052 21 6 1.6410 -7.1417 0.8981 22 9 0.6589 -6.9119 1.7969 23 6 -0.1080 -4.7829 -0.0152 24 6 -0.7331 -3.5473 -0.0099 25 7 -0.0360 -2.4324 -0.0045 26 1 -0.4849 0.8400 -0.0004 27 1 3.0875 -3.6579 -0.0209 28 1 3.2759 -5.6410 -1.6672 29 1 4.4420 -7.8061 -1.6636 30 1 3.8159 -9.5443 -0.0392 31 1 -0.6943 -5.6900 -0.0196 32 1 -1.8120 -3.4984 -0.0092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241157523.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:45 Heat of formation + Delta-G solvation = -139.462423 kcal Electronic energy + Delta-G solvation = -24722.045177 eV Core-core repulsion = 20339.862208 eV Total energy + Delta-G solvation = -4382.182969 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.25907 -48.84674 -47.72442 -47.64985 -39.33745 -37.96989 -33.92840 -32.84787 -31.40426 -30.10176 -28.99030 -26.20164 -25.71921 -23.50237 -22.39218 -21.28860 -20.82575 -18.63743 -18.55079 -18.48527 -17.26518 -17.14938 -16.19945 -15.65718 -15.55098 -15.02020 -14.71280 -14.51862 -14.41104 -14.26130 -14.13889 -14.11238 -13.83259 -13.82852 -13.22954 -13.14006 -12.70156 -12.56219 -12.46705 -12.19349 -11.75893 -11.39745 -11.23786 -11.06909 -10.89751 -10.54110 -10.09140 -9.57692 -9.30870 -8.95936 -7.98699 -7.76169 -7.68591 -6.49137 -4.62928 0.73850 0.97800 2.52152 2.67223 2.70236 3.04002 3.05609 3.12370 3.42212 3.58586 3.85061 3.88334 4.14384 4.33208 4.65188 4.71310 4.86771 5.04074 5.09510 5.52887 5.73668 5.83268 5.87024 5.98136 6.10912 6.21897 6.38199 6.56617 6.65162 6.75241 7.01624 7.18483 7.38473 7.50754 7.84404 8.11839 8.54413 8.79754 10.00304 10.22890 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.026689 B = 0.003423 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.871947 B = 8177.443628 C = 8570.646639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.429 4.429 8 H 0.084 0.916 9 C 0.254 3.746 10 C -0.246 4.246 11 C -0.012 4.012 12 C -0.048 4.048 13 C -0.052 4.052 14 C -0.132 4.132 15 C -0.061 4.061 16 C -0.227 4.227 17 C 0.515 3.485 18 F -0.177 7.177 19 F -0.173 7.173 20 F -0.174 7.174 21 C 0.156 3.844 22 F -0.116 7.116 23 C -0.294 4.294 24 C 0.128 3.872 25 N -0.479 5.479 26 H 0.275 0.725 27 H 0.103 0.897 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.096 0.904 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.851 -13.648 -0.875 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.157 4.157 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.461 4.461 8 H 0.102 0.898 9 C 0.129 3.871 10 C -0.269 4.269 11 C -0.018 4.018 12 C -0.048 4.048 13 C -0.070 4.070 14 C -0.150 4.150 15 C -0.079 4.079 16 C -0.229 4.229 17 C 0.460 3.540 18 F -0.158 7.158 19 F -0.155 7.155 20 F -0.155 7.155 21 C 0.136 3.864 22 F -0.094 7.094 23 C -0.317 4.317 24 C -0.037 4.037 25 N -0.192 5.192 26 H 0.086 0.914 27 H 0.121 0.879 28 H 0.162 0.838 29 H 0.158 0.842 30 H 0.161 0.839 31 H 0.114 0.886 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.193 -12.685 -0.797 13.730 hybrid contribution 0.506 -0.354 0.387 0.728 sum 5.698 -13.039 -0.410 14.236 Atomic orbital electron populations 1.70114 1.07217 1.28080 1.27998 1.26075 0.94928 1.01132 0.93590 0.86369 0.80093 0.80349 0.79941 1.18879 1.20139 1.18870 1.19601 0.94266 0.89338 1.42850 0.89760 1.18536 0.88341 0.91584 0.88602 1.21779 0.98453 0.92206 1.14508 1.18325 0.93246 0.89490 1.00727 1.19165 0.97023 0.93918 0.94744 1.21494 0.92366 0.96902 0.96225 1.21122 1.01054 0.93182 0.99597 1.20836 0.94089 1.00254 0.92733 1.19946 1.05306 0.94439 1.03225 1.18047 0.74794 0.80847 0.80272 1.93146 1.73910 1.53937 1.94836 1.93238 1.94755 1.88006 1.39457 1.93231 1.34052 1.92929 1.95286 1.17347 0.87423 0.92438 0.89170 1.91580 1.58550 1.94685 1.64579 1.21290 0.92909 0.98281 1.19238 1.22462 0.98944 0.88416 0.93901 1.68742 1.07226 1.26788 1.16421 0.91399 0.87900 0.83787 0.84224 0.83907 0.88622 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.58 11.46 55.55 0.64 -17.94 16 2 C 0.07 1.70 5.50 -17.34 -0.10 1.60 16 3 Si 0.91 18.02 29.56 -169.99 -5.02 12.99 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.43 -11.09 9.14 -37.69 -0.34 -11.44 16 8 H 0.08 2.01 7.85 -52.49 -0.41 1.60 16 9 C 0.25 6.71 6.55 -85.02 -0.56 6.16 16 10 C -0.25 -5.74 9.37 -38.34 -0.36 -6.10 16 11 C -0.01 -0.25 5.33 -104.65 -0.56 -0.81 16 12 C -0.05 -0.84 5.52 -104.83 -0.58 -1.41 16 13 C -0.05 -0.72 9.55 -39.26 -0.37 -1.09 16 14 C -0.13 -1.42 10.03 -39.63 -0.40 -1.82 16 15 C -0.06 -0.69 9.42 -39.53 -0.37 -1.06 16 16 C -0.23 -3.21 5.37 -104.60 -0.56 -3.77 16 17 C 0.51 7.05 3.03 36.01 0.11 7.16 16 18 F -0.18 -2.11 15.96 2.25 0.04 -2.07 16 19 F -0.17 -2.56 17.05 2.25 0.04 -2.52 16 20 F -0.17 -2.52 17.05 2.25 0.04 -2.48 16 21 C 0.16 2.66 7.01 -39.07 -0.27 2.39 16 22 F -0.12 -2.19 15.16 2.25 0.03 -2.16 16 23 C -0.29 -6.53 9.00 -38.81 -0.35 -6.88 16 24 C 0.13 3.07 11.17 -17.61 -0.20 2.87 16 25 N -0.48 -12.94 7.85 -11.21 -0.09 -13.03 16 26 H 0.27 6.49 8.29 -40.82 -0.34 6.15 16 27 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 28 H 0.14 1.85 8.05 -52.49 -0.42 1.42 16 29 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 30 H 0.14 1.22 7.14 -52.49 -0.37 0.84 16 31 H 0.10 1.96 7.86 -52.48 -0.41 1.55 16 32 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 LS Contribution 304.76 15.07 4.59 4.59 Total: -1.00 -28.54 304.76 -6.67 -35.21 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -2.02 Total: 1.62 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -4.91 Total: -14.21 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: 0.55 Total: -30.97 kcal Atomic # 9 Polarization: -9.38 SS G_CDS: 0.15 Total: -9.23 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.02 Total: 12.99 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.54 -6.67 -35.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241157523.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.250 kcal (2) G-P(sol) polarization free energy of solvation -28.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds