Wall clock time and date at job start Tue Mar 31 2020 09:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30722 * 1 3 3 Si 1.86802 * 120.00012 * 2 1 4 4 H 1.48495 * 109.47005 * 240.00045 * 3 2 1 5 5 H 1.48501 * 109.47273 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47067 * 119.99762 * 3 2 1 7 7 C 1.40092 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00153 * 180.02562 * 7 2 1 9 9 C 1.40967 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.40892 * 119.67951 * 180.02562 * 9 7 2 11 11 C 1.36659 * 119.25803 * 179.72321 * 10 9 7 12 12 C 1.40292 * 118.60293 * 0.50089 * 11 10 9 13 13 C 1.47916 * 120.35014 * 179.77496 * 12 11 10 14 14 C 1.39640 * 120.15680 * 309.72318 * 13 12 11 15 15 C 1.37886 * 119.87181 * 179.97438 * 14 13 12 16 16 C 1.38458 * 120.21098 * 0.02562 * 15 14 13 17 17 C 1.38294 * 120.32602 * 359.97438 * 16 15 14 18 18 C 1.50707 * 119.94016 * 179.97438 * 17 16 15 19 19 F 1.39892 * 109.47100 * 0.02562 * 18 17 16 20 20 F 1.39897 * 109.46718 * 120.00163 * 18 17 16 21 21 F 1.39898 * 109.47155 * 240.00066 * 18 17 16 22 22 C 1.38229 * 120.12242 * 359.74361 * 17 16 15 23 23 F 1.35097 * 120.10710 * 180.27599 * 22 17 16 24 24 C 1.40134 * 119.30471 * 359.49799 * 12 11 10 25 25 N 1.31176 * 120.68091 * 0.25510 * 24 12 11 26 26 H 0.97000 * 120.00080 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.36588 * 359.95709 * 10 9 7 28 28 H 1.07995 * 120.69898 * 180.27283 * 11 10 9 29 29 H 1.07993 * 120.06512 * 359.95142 * 14 13 12 30 30 H 1.08000 * 119.89426 * 180.02562 * 15 14 13 31 31 H 1.07999 * 119.83669 * 180.02562 * 16 15 14 32 32 H 1.07999 * 119.65270 * 180.27673 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.0949 1.6964 -1.2125 5 1 1.2763 2.7465 0.0006 6 1 3.0949 1.6964 1.2125 7 6 2.0077 -1.2132 0.0005 8 1 3.0877 -1.2133 0.0010 9 6 1.3028 -2.4340 0.0016 10 6 2.0141 -3.6502 0.0027 11 6 1.3221 -4.8287 0.0095 12 6 -0.0801 -4.7842 0.0045 13 6 -0.8676 -6.0363 0.0065 14 6 -0.5846 -7.0445 -0.9173 15 6 -1.3221 -8.2095 -0.9098 16 6 -2.3422 -8.3824 0.0103 17 6 -2.6297 -7.3895 0.9290 18 6 -3.7423 -7.5866 1.9262 19 9 -4.3307 -8.8400 1.7266 20 9 -3.2235 -7.5167 3.2235 21 9 -4.7051 -6.5863 1.7544 22 6 -1.8952 -6.2185 0.9374 23 9 -2.1726 -5.2510 1.8386 24 6 -0.7269 -3.5410 0.0033 25 7 -0.0350 -2.4266 0.0020 26 1 -0.4850 0.8400 -0.0004 27 1 3.0941 -3.6511 0.0020 28 1 1.8437 -5.7743 0.0149 29 1 0.2100 -6.9118 -1.6365 30 1 -1.1033 -8.9896 -1.6239 31 1 -2.9158 -9.2975 0.0110 32 1 -1.8061 -3.5002 0.0040 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241157573.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:41 Heat of formation + Delta-G solvation = -142.411661 kcal Electronic energy + Delta-G solvation = -24751.735676 eV Core-core repulsion = 20369.424819 eV Total energy + Delta-G solvation = -4382.310857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.13802 -48.63177 -47.60484 -47.53204 -39.13614 -37.97488 -34.07033 -32.47554 -31.14243 -30.69771 -29.04226 -25.97792 -25.82321 -22.80354 -22.37933 -21.53484 -20.68526 -18.44678 -18.43186 -18.17616 -17.69019 -17.02119 -16.06742 -15.75438 -15.32312 -15.12122 -14.61330 -14.41242 -14.31152 -14.25398 -14.15204 -14.00059 -13.71985 -13.70366 -13.01169 -12.87476 -12.68500 -12.43921 -12.20822 -12.13732 -11.75856 -11.44125 -11.28572 -11.17983 -10.91119 -10.54947 -10.15443 -9.64497 -9.16941 -8.76874 -8.38952 -7.75284 -7.54503 -6.61927 -4.73401 0.92940 1.19188 2.52722 2.68977 2.94112 2.97419 2.99078 3.03605 3.57975 3.72289 3.77881 4.01219 4.34153 4.45855 4.54686 4.92184 5.05112 5.26853 5.31632 5.68150 5.78792 5.92426 5.96075 6.03443 6.14947 6.29454 6.45074 6.59268 6.67546 6.88727 6.88945 7.20021 7.37354 7.53055 7.81996 7.99007 8.40991 8.69339 9.90733 10.07460 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.025283 B = 0.003530 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.186987 B = 7930.932281 C = 8634.197310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.697 5.697 2 C 0.063 3.937 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.406 4.406 8 H 0.088 0.912 9 C 0.253 3.747 10 C -0.272 4.272 11 C -0.028 4.028 12 C -0.295 4.295 13 C -0.003 4.003 14 C -0.075 4.075 15 C -0.127 4.127 16 C -0.080 4.080 17 C -0.219 4.219 18 C 0.513 3.487 19 F -0.179 7.179 20 F -0.175 7.175 21 F -0.174 7.174 22 C 0.133 3.867 23 F -0.120 7.120 24 C 0.169 3.831 25 N -0.487 5.487 26 H 0.279 0.721 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.697 -12.152 -0.756 12.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.317 5.317 2 C -0.165 4.165 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.436 4.436 8 H 0.106 0.894 9 C 0.130 3.870 10 C -0.295 4.295 11 C -0.051 4.051 12 C -0.301 4.301 13 C -0.005 4.005 14 C -0.094 4.094 15 C -0.145 4.145 16 C -0.099 4.099 17 C -0.221 4.221 18 C 0.459 3.541 19 F -0.160 7.160 20 F -0.156 7.156 21 F -0.155 7.155 22 C 0.113 3.887 23 F -0.099 7.099 24 C -0.001 4.001 25 N -0.198 5.198 26 H 0.090 0.910 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.154 0.846 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.293 -11.083 -0.682 11.905 hybrid contribution 0.498 -0.066 0.389 0.635 sum -3.795 -11.150 -0.293 11.782 Atomic orbital electron populations 1.70108 1.07401 1.28636 1.25528 1.26210 0.95029 1.01553 0.93730 0.86286 0.80107 0.79850 0.80132 1.18675 1.19931 1.18672 1.19771 0.94672 0.89589 1.39551 0.89358 1.18675 0.88526 0.91989 0.87809 1.21399 0.98907 0.93447 1.15702 1.20509 0.92294 0.96841 0.95481 1.18766 0.93177 0.91293 1.26851 1.18937 0.93432 0.95492 0.92619 1.21470 0.98913 0.92178 0.96792 1.21047 0.96045 0.98155 0.99243 1.20722 0.97858 0.97509 0.93779 1.19919 1.00984 0.98435 1.02751 1.18127 0.81874 0.73732 0.80384 1.93136 1.85546 1.42374 1.94957 1.93226 1.86615 1.95950 1.39840 1.93230 1.65755 1.61244 1.95307 1.17521 0.96674 0.85034 0.89491 1.91558 1.92456 1.61232 1.64605 1.22687 0.98524 0.87567 0.91291 1.68812 1.07074 1.25950 1.17961 0.90973 0.87963 0.88415 0.84556 0.84849 0.84400 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.82 11.44 55.55 0.64 -17.19 16 2 C 0.06 1.51 5.50 -17.33 -0.10 1.42 16 3 Si 0.91 17.53 29.56 -169.99 -5.02 12.50 16 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.41 -10.29 9.12 -37.85 -0.35 -10.63 16 8 H 0.09 2.05 7.85 -52.49 -0.41 1.63 16 9 C 0.25 6.61 6.55 -84.98 -0.56 6.05 16 10 C -0.27 -6.29 9.76 -39.15 -0.38 -6.67 16 11 C -0.03 -0.59 9.60 -39.38 -0.38 -0.97 16 12 C -0.30 -6.31 5.35 -104.45 -0.56 -6.87 16 13 C 0.00 -0.05 5.50 -104.81 -0.58 -0.63 16 14 C -0.08 -1.07 9.54 -39.19 -0.37 -1.44 16 15 C -0.13 -1.47 10.03 -39.63 -0.40 -1.87 16 16 C -0.08 -0.99 9.43 -39.48 -0.37 -1.36 16 17 C -0.22 -3.30 5.37 -104.60 -0.56 -3.86 16 18 C 0.51 7.53 3.03 36.01 0.11 7.64 16 19 F -0.18 -2.30 15.96 2.25 0.04 -2.26 16 20 F -0.18 -2.73 17.03 2.25 0.04 -2.69 16 21 F -0.17 -2.72 17.06 2.25 0.04 -2.68 16 22 C 0.13 2.36 7.00 -38.98 -0.27 2.09 16 23 F -0.12 -2.40 15.13 2.25 0.03 -2.37 16 24 C 0.17 4.05 10.06 -17.12 -0.17 3.88 16 25 N -0.49 -13.07 7.83 -10.84 -0.08 -13.15 16 26 H 0.28 6.43 8.29 -40.82 -0.34 6.10 16 27 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 28 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.14 1.75 8.05 -52.49 -0.42 1.33 16 30 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.14 1.33 7.14 -52.49 -0.37 0.96 16 32 H 0.12 2.70 7.82 -52.49 -0.41 2.29 16 LS Contribution 304.50 15.07 4.59 4.59 Total: -1.00 -27.62 304.50 -6.69 -34.31 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -2.02 Total: 2.16 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -4.93 Total: -13.21 kcal Atomic # 7 Polarization: -30.89 SS G_CDS: 0.55 Total: -30.34 kcal Atomic # 9 Polarization: -10.15 SS G_CDS: 0.15 Total: -10.01 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.02 Total: 12.50 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.62 -6.69 -34.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241157573.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.100 kcal (2) G-P(sol) polarization free energy of solvation -27.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds