Wall clock time and date at job start Tue Mar 31 2020 09:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86794 * 120.00513 * 2 1 4 4 H 1.48498 * 109.47176 * 270.00114 * 3 2 1 5 5 H 1.48506 * 109.46863 * 30.00341 * 3 2 1 6 6 H 1.48503 * 109.47412 * 149.99680 * 3 2 1 7 7 C 1.40153 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99645 * 179.97438 * 7 2 1 9 9 C 1.40790 * 120.00042 * 0.28150 * 7 2 1 10 10 N 1.33712 * 119.93825 * 359.71647 * 9 7 2 11 11 C 1.31271 * 121.63111 * 179.97438 * 10 9 7 12 12 C 1.39077 * 121.35237 * 0.02882 * 11 10 9 13 13 C 1.38366 * 119.72848 * 359.97438 * 12 11 10 14 14 C 1.39719 * 118.47234 * 359.74591 * 13 12 11 15 15 C 1.47757 * 120.65271 * 180.24723 * 14 13 12 16 16 C 1.39708 * 120.16771 * 64.99724 * 15 14 13 17 17 C 1.37867 * 119.86695 * 179.79246 * 16 15 14 18 18 C 1.38477 * 120.21477 * 0.46114 * 17 16 15 19 19 C 1.38300 * 120.34468 * 359.79349 * 18 17 16 20 20 C 1.50698 * 119.93845 * 179.97438 * 19 18 17 21 21 F 1.39895 * 109.47068 * 359.97438 * 20 19 18 22 22 F 1.39899 * 109.46977 * 119.97899 * 20 19 18 23 23 F 1.39898 * 109.47001 * 239.97673 * 20 19 18 24 24 C 1.38216 * 120.12501 * 359.97281 * 19 18 17 25 25 F 1.35095 * 120.11054 * 179.97438 * 24 19 18 26 26 H 0.97005 * 119.99603 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.32377 * 179.97438 * 11 10 9 28 28 H 1.07995 * 120.13369 * 179.97438 * 12 11 10 29 29 H 1.08002 * 120.76507 * 180.02562 * 13 12 11 30 30 H 1.07995 * 120.06954 * 359.97438 * 16 15 14 31 31 H 1.08001 * 119.89303 * 180.23086 * 17 16 15 32 32 H 1.07996 * 119.82645 * 179.76150 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2411 1.6176 0.0000 4 1 2.4886 2.0463 -1.4001 5 1 1.4386 2.6526 0.7001 6 1 3.5386 1.4400 0.7001 7 6 2.0076 -1.2138 0.0005 8 1 3.0876 -1.2138 0.0001 9 6 1.3036 -2.4330 -0.0049 10 7 -0.0335 -2.4315 -0.0049 11 6 -0.7232 -3.5484 -0.0103 12 6 -0.0929 -4.7881 -0.0159 13 6 1.2892 -4.8552 -0.0162 14 6 2.0140 -3.6607 -0.0163 15 6 3.4914 -3.6760 -0.0221 16 6 4.1839 -4.1913 -1.1206 17 6 5.5625 -4.1987 -1.1213 18 6 6.2626 -3.7059 -0.0329 19 6 5.5861 -3.1986 1.0615 20 6 6.3571 -2.6651 2.2413 21 9 7.7289 -2.7900 1.9969 22 9 6.0387 -1.3167 2.4352 23 9 6.0193 -3.3935 3.3869 24 6 4.2041 -3.1799 1.0751 25 9 3.5435 -2.6847 2.1445 26 1 -0.4850 0.8401 0.0004 27 1 -1.8023 -3.5037 -0.0097 28 1 -0.6797 -5.6947 -0.0199 29 1 1.7960 -5.8089 -0.0208 30 1 3.6404 -4.5804 -1.9689 31 1 6.0983 -4.5935 -1.9719 32 1 7.3425 -3.7182 -0.0385 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241159043.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:42 Heat of formation + Delta-G solvation = -138.792118 kcal Electronic energy + Delta-G solvation = -25761.508719 eV Core-core repulsion = 21379.354817 eV Total energy + Delta-G solvation = -4382.153902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.99887 -48.38378 -47.46905 -47.38431 -39.05396 -37.83893 -33.79842 -32.73748 -31.10377 -30.42331 -28.68663 -25.94057 -25.71714 -23.16525 -22.03873 -21.38759 -20.54451 -18.30369 -18.28424 -18.01527 -17.61240 -16.86021 -16.02531 -15.63299 -15.06235 -14.95323 -14.54024 -14.36367 -14.27438 -14.17883 -14.06006 -13.86548 -13.57928 -13.56290 -12.92915 -12.78256 -12.57025 -12.27082 -12.09679 -12.01234 -11.65937 -11.30681 -11.21796 -11.13605 -10.84961 -10.49966 -10.08733 -9.51407 -9.02457 -8.57238 -8.21273 -7.73204 -7.57678 -6.57112 -4.69132 1.09981 1.39531 2.56315 2.79613 2.87044 3.02916 3.07527 3.14716 3.69208 3.85719 3.86553 4.15984 4.51887 4.60886 4.61339 5.05879 5.19234 5.39509 5.44935 5.71201 5.90135 5.96114 6.06512 6.20901 6.30268 6.39643 6.47652 6.61248 6.74302 6.92732 7.03486 7.18581 7.40011 7.55721 7.86431 8.06267 8.47007 8.75234 9.93410 10.12776 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.012738 B = 0.006759 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.680448 B = 4141.883231 C = 5357.405257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.703 5.703 2 C 0.070 3.930 3 Si 0.901 3.099 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.408 4.408 8 H 0.082 0.918 9 C 0.274 3.726 10 N -0.479 5.479 11 C 0.138 3.862 12 C -0.322 4.322 13 C -0.023 4.023 14 C -0.256 4.256 15 C -0.002 4.002 16 C -0.067 4.067 17 C -0.134 4.134 18 C -0.074 4.074 19 C -0.229 4.229 20 C 0.513 3.487 21 F -0.180 7.180 22 F -0.172 7.172 23 F -0.176 7.176 24 C 0.157 3.843 25 F -0.113 7.113 26 H 0.277 0.723 27 H 0.121 0.879 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.752 -4.898 -0.817 10.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.158 4.158 3 Si 0.724 3.276 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.437 4.437 8 H 0.100 0.900 9 C 0.151 3.849 10 N -0.190 5.190 11 C -0.031 4.031 12 C -0.345 4.345 13 C -0.047 4.047 14 C -0.261 4.261 15 C -0.004 4.004 16 C -0.085 4.085 17 C -0.152 4.152 18 C -0.092 4.092 19 C -0.231 4.231 20 C 0.459 3.541 21 F -0.161 7.161 22 F -0.153 7.153 23 F -0.158 7.158 24 C 0.137 3.863 25 F -0.091 7.091 26 H 0.088 0.912 27 H 0.138 0.862 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.159 -3.846 -0.719 9.960 hybrid contribution 0.762 0.049 0.418 0.871 sum 9.921 -3.797 -0.302 10.627 Atomic orbital electron populations 1.70094 1.07278 1.28311 1.26587 1.26111 0.94933 1.01316 0.93412 0.86390 0.80999 0.80608 0.79586 1.19050 1.19696 1.17983 1.19577 0.94310 0.89470 1.40383 0.89989 1.18459 0.88000 0.90589 0.87844 1.68781 1.06854 1.26581 1.16806 1.22655 0.98928 0.88822 0.92737 1.21204 0.94431 0.97965 1.20944 1.20821 0.93831 0.95333 0.94752 1.19034 0.89173 0.95041 1.22835 1.18779 0.94273 0.96006 0.91298 1.21483 0.93601 0.96505 0.96959 1.21006 0.94119 1.01738 0.98340 1.20720 1.00178 0.96663 0.91616 1.19930 0.92867 1.12699 0.97629 1.18125 0.77079 0.76005 0.82895 1.93127 1.32938 1.95783 1.94284 1.93247 1.92500 1.33945 1.95647 1.93212 1.92104 1.77466 1.52992 1.17581 0.87523 0.95882 0.85333 1.91578 1.80862 1.84156 1.52502 0.91205 0.86171 0.88452 0.88433 0.84680 0.84913 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.21 11.46 55.56 0.64 -17.58 16 2 C 0.07 1.75 5.50 -17.32 -0.10 1.65 16 3 Si 0.90 18.67 29.56 -169.99 -5.02 13.65 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.41 -10.64 8.05 -37.90 -0.31 -10.95 16 8 H 0.08 2.08 6.03 -52.49 -0.32 1.76 16 9 C 0.27 7.19 6.46 -84.71 -0.55 6.64 16 10 N -0.48 -12.77 7.85 -10.90 -0.09 -12.86 16 11 C 0.14 3.21 11.17 -17.48 -0.20 3.02 16 12 C -0.32 -6.85 10.10 -39.22 -0.40 -7.25 16 13 C -0.02 -0.49 9.88 -38.98 -0.39 -0.87 16 14 C -0.26 -5.90 5.07 -104.08 -0.53 -6.43 16 15 C 0.00 -0.04 4.47 -104.83 -0.47 -0.51 16 16 C -0.07 -1.08 9.75 -39.17 -0.38 -1.46 16 17 C -0.13 -1.76 10.03 -39.63 -0.40 -2.16 16 18 C -0.07 -1.02 9.43 -39.47 -0.37 -1.39 16 19 C -0.23 -3.91 5.37 -104.61 -0.56 -4.47 16 20 C 0.51 8.46 3.02 36.00 0.11 8.57 16 21 F -0.18 -2.58 15.96 2.25 0.04 -2.54 16 22 F -0.17 -3.11 17.05 2.25 0.04 -3.07 16 23 F -0.18 -2.98 17.05 2.25 0.04 -2.94 16 24 C 0.16 3.16 5.80 -38.96 -0.23 2.93 16 25 F -0.11 -2.57 15.35 2.25 0.03 -2.53 16 26 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 27 H 0.12 2.46 8.06 -52.48 -0.42 2.03 16 28 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 31 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 32 H 0.14 1.52 7.14 -52.49 -0.37 1.15 16 LS Contribution 301.47 15.07 4.54 4.54 Total: -1.00 -28.35 301.47 -6.47 -34.83 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -1.94 Total: 1.18 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -4.75 Total: -12.67 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.55 Total: -30.43 kcal Atomic # 9 Polarization: -11.24 SS G_CDS: 0.15 Total: -11.09 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.35 -6.47 -34.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241159043.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.964 kcal (2) G-P(sol) polarization free energy of solvation -28.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds