Wall clock time and date at job start Tue Mar 31 2020 09:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30770 * 1 3 3 Si 1.86800 * 120.00146 * 2 1 4 4 H 1.48502 * 109.46978 * 270.89550 * 3 2 1 5 5 H 1.48494 * 109.47237 * 30.89189 * 3 2 1 6 6 H 1.48500 * 109.47186 * 150.89602 * 3 2 1 7 7 C 1.40079 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99362 * 342.37677 * 7 2 1 9 9 C 1.40879 * 120.00223 * 162.37845 * 7 2 1 10 10 C 1.41130 * 120.71930 * 330.64977 * 9 7 2 11 11 C 1.36890 * 118.39549 * 180.24441 * 10 9 7 12 12 C 1.38870 * 119.79708 * 359.75675 * 11 10 9 13 13 N 1.31745 * 121.50434 * 359.97438 * 12 11 10 14 14 C 1.32579 * 121.72230 * 0.02562 * 13 12 11 15 15 C 1.47821 * 119.99184 * 179.97438 * 14 13 12 16 16 C 1.39701 * 120.13681 * 316.81916 * 15 14 13 17 17 C 1.37906 * 119.89895 * 180.02562 * 16 15 14 18 18 C 1.38387 * 120.17601 * 0.02562 * 17 16 15 19 19 C 1.50707 * 119.85689 * 179.97438 * 18 17 16 20 20 F 1.39894 * 109.46967 * 359.97438 * 19 18 17 21 21 F 1.39901 * 109.46663 * 119.99635 * 19 18 17 22 22 F 1.39897 * 109.47139 * 239.99482 * 19 18 17 23 23 C 1.38589 * 120.28161 * 359.97370 * 18 17 16 24 24 F 1.35104 * 119.95031 * 180.02562 * 23 18 17 25 25 C 1.38170 * 120.10036 * 359.76516 * 23 18 17 26 26 H 0.97000 * 119.99458 * 0.02562 * 1 2 3 27 27 H 1.08006 * 120.80516 * 0.02562 * 10 9 7 28 28 H 1.08001 * 120.09593 * 179.73068 * 11 10 9 29 29 H 1.07989 * 119.24575 * 180.02562 * 12 11 10 30 30 H 1.07996 * 120.05163 * 359.97252 * 16 15 14 31 31 H 1.07996 * 119.91475 * 180.02562 * 17 16 15 32 32 H 1.08000 * 120.08822 * 180.26252 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 2.4703 2.0573 -1.3999 5 1 1.4488 2.6471 0.7188 6 1 3.5486 1.4347 0.6810 7 6 2.0081 -1.2131 -0.0005 8 1 1.5060 -2.1265 0.2822 9 6 3.3673 -1.2416 -0.3699 10 6 3.8855 -0.3008 -1.2853 11 6 5.2121 -0.3753 -1.6146 12 6 6.0104 -1.3585 -1.0448 13 7 5.5216 -2.2305 -0.1867 14 6 4.2460 -2.2133 0.1745 15 6 3.7379 -3.2105 1.1401 16 6 4.1172 -4.5505 1.0295 17 6 3.6398 -5.4768 1.9327 18 6 2.7858 -5.0826 2.9478 19 6 2.2680 -6.1010 3.9305 20 9 2.7856 -7.3611 3.6125 21 9 2.6662 -5.7456 5.2237 22 9 0.8710 -6.1417 3.8675 23 6 2.4048 -3.7552 3.0644 24 9 1.5712 -3.3776 4.0583 25 6 2.8805 -2.8165 2.1691 26 1 -0.4849 0.8401 -0.0004 27 1 3.2500 0.4575 -1.7184 28 1 5.6365 0.3281 -2.3157 29 1 7.0559 -1.4089 -1.3105 30 1 4.7825 -4.8606 0.2373 31 1 3.9331 -6.5127 1.8477 32 1 2.5868 -1.7814 2.2627 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241908120.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:35 Heat of formation + Delta-G solvation = -148.874010 kcal Electronic energy + Delta-G solvation = -25166.528926 eV Core-core repulsion = 20783.937841 eV Total energy + Delta-G solvation = -4382.591086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.01854 -48.67006 -47.48518 -47.41770 -39.42572 -38.02792 -34.35803 -32.69624 -31.67781 -30.27120 -29.76618 -26.41928 -25.22853 -22.93061 -22.58270 -21.62235 -20.67694 -18.35014 -18.31635 -18.23919 -17.79098 -17.14370 -16.15516 -15.75301 -15.37696 -15.15179 -14.79791 -14.41397 -14.29363 -14.28694 -13.88853 -13.82316 -13.66483 -13.60820 -13.50347 -13.29614 -12.81732 -12.61444 -12.36537 -12.17141 -11.91954 -11.63164 -11.38134 -11.12507 -10.98390 -10.51392 -10.18389 -9.75057 -9.15891 -8.61982 -8.51952 -8.40883 -7.84677 -7.35236 -4.88130 0.97186 1.53318 2.16493 2.42273 2.83075 2.83689 2.95530 3.03630 3.63468 3.77165 3.88242 4.15288 4.22286 4.41303 4.60367 4.96290 5.06587 5.20956 5.46625 5.68469 5.76283 5.79073 5.95370 6.07905 6.13658 6.27652 6.35512 6.43619 6.59177 6.84046 6.87022 7.07438 7.19574 7.31144 7.50324 7.89799 8.11320 8.30245 9.10364 9.62928 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.017542 B = 0.004974 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.775913 B = 5627.865869 C = 6754.174514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.081 3.919 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.419 4.419 8 H 0.105 0.895 9 C 0.064 3.936 10 C -0.205 4.205 11 C -0.113 4.113 12 C -0.037 4.037 13 N -0.433 5.433 14 C 0.007 3.993 15 C 0.086 3.914 16 C -0.123 4.123 17 C -0.052 4.052 18 C -0.248 4.248 19 C 0.516 3.484 20 F -0.179 7.179 21 F -0.178 7.178 22 F -0.177 7.177 23 C 0.144 3.856 24 F -0.132 7.132 25 C -0.132 4.132 26 H 0.294 0.706 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.130 0.870 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.741 -4.775 2.905 6.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.446 4.446 8 H 0.122 0.878 9 C 0.059 3.941 10 C -0.230 4.230 11 C -0.133 4.133 12 C -0.198 4.198 13 N -0.140 5.140 14 C -0.132 4.132 15 C 0.085 3.915 16 C -0.142 4.142 17 C -0.070 4.070 18 C -0.251 4.251 19 C 0.461 3.539 20 F -0.161 7.161 21 F -0.160 7.160 22 F -0.158 7.158 23 C 0.124 3.876 24 F -0.110 7.110 25 C -0.151 4.151 26 H 0.105 0.895 27 H 0.132 0.868 28 H 0.126 0.874 29 H 0.148 0.852 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.933 -5.314 3.336 7.405 hybrid contribution -0.674 1.385 -0.219 1.556 sum 3.259 -3.928 3.117 5.981 Atomic orbital electron populations 1.69639 1.08212 1.31278 1.30445 1.26313 0.94860 1.02062 0.91018 0.86325 0.81034 0.79364 0.79585 1.18966 1.20989 1.16764 1.19637 0.92453 0.96554 1.35913 0.87764 1.18368 0.93727 0.91266 0.90725 1.21254 0.95908 1.03607 1.02272 1.21428 0.94665 0.98243 0.98991 1.21714 0.99052 0.97039 1.01975 1.67007 1.13964 1.22633 1.10359 1.19193 0.89451 1.01417 1.03106 1.18400 0.90598 0.92046 0.90469 1.21305 1.01191 0.91865 0.99871 1.20674 0.93890 1.00446 0.91981 1.19880 1.10000 0.92403 1.02809 1.18108 0.75538 0.80168 0.80041 1.93132 1.86795 1.43456 1.92682 1.93204 1.90544 1.91761 1.40451 1.93217 1.29734 1.96524 1.96325 1.17105 0.91525 0.91404 0.87525 1.91526 1.68833 1.91879 1.58761 1.21448 0.99178 1.00799 0.93705 0.89536 0.86757 0.87446 0.85232 0.84479 0.84264 0.82550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.29 13.93 55.55 0.77 -17.52 16 2 C 0.08 1.87 5.43 -17.31 -0.09 1.77 16 3 Si 0.91 18.33 24.55 -169.99 -4.17 14.16 16 4 H -0.26 -5.10 6.48 56.52 0.37 -4.73 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 6 H -0.24 -5.10 7.01 56.52 0.40 -4.70 16 7 C -0.42 -9.89 7.20 -37.89 -0.27 -10.16 16 8 H 0.10 2.60 6.73 -52.49 -0.35 2.25 16 9 C 0.06 1.47 5.11 -106.41 -0.54 0.92 16 10 C -0.21 -4.39 7.33 -38.97 -0.29 -4.68 16 11 C -0.11 -2.17 10.03 -39.84 -0.40 -2.57 16 12 C -0.04 -0.73 11.16 -17.36 -0.19 -0.92 16 13 N -0.43 -9.17 10.15 -9.17 -0.09 -9.26 16 14 C 0.01 0.15 6.43 -82.24 -0.53 -0.37 16 15 C 0.09 1.70 5.26 -104.92 -0.55 1.15 16 16 C -0.12 -2.10 9.66 -39.16 -0.38 -2.48 16 17 C -0.05 -0.79 9.41 -39.65 -0.37 -1.16 16 18 C -0.25 -4.13 5.39 -104.43 -0.56 -4.70 16 19 C 0.52 8.03 3.02 36.01 0.11 8.14 16 20 F -0.18 -2.53 15.96 2.25 0.04 -2.49 16 21 F -0.18 -2.82 17.04 2.25 0.04 -2.78 16 22 F -0.18 -2.89 17.04 2.25 0.04 -2.85 16 23 C 0.14 2.65 7.12 -39.48 -0.28 2.37 16 24 F -0.13 -2.45 16.43 2.25 0.04 -2.42 16 25 C -0.13 -2.58 7.85 -39.09 -0.31 -2.89 16 26 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 27 H 0.11 2.39 4.58 -52.48 -0.24 2.15 16 28 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.13 2.12 8.06 -52.49 -0.42 1.69 16 30 H 0.14 2.18 8.06 -52.49 -0.42 1.75 16 31 H 0.14 1.72 7.14 -52.49 -0.37 1.34 16 32 H 0.16 3.20 6.75 -52.49 -0.35 2.84 16 LS Contribution 293.74 15.07 4.43 4.43 Total: -1.00 -24.29 293.74 -5.34 -29.63 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -1.77 Total: 4.66 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -4.66 Total: -15.57 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.68 Total: -26.78 kcal Atomic # 9 Polarization: -10.68 SS G_CDS: 0.15 Total: -10.53 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -4.17 Total: 14.16 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -24.29 -5.34 -29.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241908120.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.241 kcal (2) G-P(sol) polarization free energy of solvation -24.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds