Wall clock time and date at job start Tue Mar 31 2020 09:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30770 * 1 3 3 Si 1.86800 * 120.00146 * 2 1 4 4 H 1.48502 * 109.46978 * 270.89550 * 3 2 1 5 5 H 1.48494 * 109.47237 * 30.89189 * 3 2 1 6 6 H 1.48500 * 109.47186 * 150.89602 * 3 2 1 7 7 C 1.40079 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99362 * 342.37677 * 7 2 1 9 9 C 1.40879 * 120.00223 * 162.37845 * 7 2 1 10 10 C 1.41130 * 120.71930 * 330.64977 * 9 7 2 11 11 C 1.36890 * 118.39549 * 180.24441 * 10 9 7 12 12 C 1.38870 * 119.79708 * 359.75675 * 11 10 9 13 13 N 1.31745 * 121.50434 * 359.97438 * 12 11 10 14 14 C 1.32579 * 121.72230 * 0.02562 * 13 12 11 15 15 C 1.47821 * 119.99184 * 179.97438 * 14 13 12 16 16 C 1.39701 * 120.13681 * 316.81916 * 15 14 13 17 17 C 1.37906 * 119.89895 * 180.02562 * 16 15 14 18 18 C 1.38387 * 120.17601 * 0.02562 * 17 16 15 19 19 C 1.50707 * 119.85689 * 179.97438 * 18 17 16 20 20 F 1.39894 * 109.46967 * 359.97438 * 19 18 17 21 21 F 1.39901 * 109.46663 * 119.99635 * 19 18 17 22 22 F 1.39897 * 109.47139 * 239.99482 * 19 18 17 23 23 C 1.38589 * 120.28161 * 359.97370 * 18 17 16 24 24 F 1.35104 * 119.95031 * 180.02562 * 23 18 17 25 25 C 1.38170 * 120.10036 * 359.76516 * 23 18 17 26 26 H 0.97000 * 119.99458 * 0.02562 * 1 2 3 27 27 H 1.08006 * 120.80516 * 0.02562 * 10 9 7 28 28 H 1.08001 * 120.09593 * 179.73068 * 11 10 9 29 29 H 1.07989 * 119.24575 * 180.02562 * 12 11 10 30 30 H 1.07996 * 120.05163 * 359.97252 * 16 15 14 31 31 H 1.07996 * 119.91475 * 180.02562 * 17 16 15 32 32 H 1.08000 * 120.08822 * 180.26252 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 2.4703 2.0573 -1.3999 5 1 1.4488 2.6471 0.7188 6 1 3.5486 1.4347 0.6810 7 6 2.0081 -1.2131 -0.0005 8 1 1.5060 -2.1265 0.2822 9 6 3.3673 -1.2416 -0.3699 10 6 3.8855 -0.3008 -1.2853 11 6 5.2121 -0.3753 -1.6146 12 6 6.0104 -1.3585 -1.0448 13 7 5.5216 -2.2305 -0.1867 14 6 4.2460 -2.2133 0.1745 15 6 3.7379 -3.2105 1.1401 16 6 4.1172 -4.5505 1.0295 17 6 3.6398 -5.4768 1.9327 18 6 2.7858 -5.0826 2.9478 19 6 2.2680 -6.1010 3.9305 20 9 2.7856 -7.3611 3.6125 21 9 2.6662 -5.7456 5.2237 22 9 0.8710 -6.1417 3.8675 23 6 2.4048 -3.7552 3.0644 24 9 1.5712 -3.3776 4.0583 25 6 2.8805 -2.8165 2.1691 26 1 -0.4849 0.8401 -0.0004 27 1 3.2500 0.4575 -1.7184 28 1 5.6365 0.3281 -2.3157 29 1 7.0559 -1.4089 -1.3105 30 1 4.7825 -4.8606 0.2373 31 1 3.9331 -6.5127 1.8477 32 1 2.5868 -1.7814 2.2627 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241908120.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:35 Heat of formation + Delta-G solvation = -160.041352 kcal Electronic energy + Delta-G solvation = -25167.013179 eV Core-core repulsion = 20783.937841 eV Total energy + Delta-G solvation = -4383.075338 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.28378 -50.13509 -48.71241 -48.70330 -40.97092 -39.51416 -36.03066 -34.16907 -33.33652 -31.69505 -31.28211 -27.97341 -26.71820 -24.42702 -24.02932 -23.18431 -22.18696 -19.71481 -19.58414 -19.55479 -19.41670 -18.62052 -17.72086 -17.23882 -16.86177 -16.69619 -16.37593 -15.76177 -15.65320 -15.55827 -15.26469 -15.16037 -15.13213 -14.89906 -14.86102 -14.75613 -14.35031 -14.12916 -13.92527 -13.68445 -13.36064 -13.26048 -12.78333 -12.68923 -12.49069 -12.07155 -11.82424 -11.41142 -10.65863 -10.23580 -10.04402 -9.93393 -9.41962 -9.04504 -6.61913 -0.47388 0.11537 0.58186 0.78321 1.20398 1.34789 1.42470 1.54054 2.00046 2.33828 2.54960 2.57867 2.81986 3.03308 3.31658 3.43633 3.53591 3.80776 4.10672 4.22923 4.24364 4.31440 4.50388 4.61406 4.64128 4.79115 4.87359 4.98387 5.01500 5.27456 5.38859 5.58530 5.61438 5.72581 5.86840 6.15822 6.45749 6.57742 7.47913 7.99727 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.017542 B = 0.004974 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.775913 B = 5627.865869 C = 6754.174514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.052 3.948 3 Si 0.957 3.043 4 H -0.246 1.246 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.445 4.445 8 H 0.074 0.926 9 C 0.047 3.953 10 C -0.219 4.219 11 C -0.111 4.111 12 C -0.028 4.028 13 N -0.447 5.447 14 C -0.001 4.001 15 C 0.062 3.938 16 C -0.116 4.116 17 C -0.034 4.034 18 C -0.244 4.244 19 C 0.522 3.478 20 F -0.165 7.165 21 F -0.179 7.179 22 F -0.181 7.181 23 C 0.132 3.868 24 F -0.138 7.138 25 C -0.142 4.142 26 H 0.300 0.700 27 H 0.117 0.883 28 H 0.149 0.851 29 H 0.168 0.832 30 H 0.153 0.847 31 H 0.179 0.821 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.105 -5.489 2.192 8.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.167 4.167 3 Si 0.780 3.220 4 H -0.171 1.171 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.473 4.473 8 H 0.092 0.908 9 C 0.043 3.957 10 C -0.245 4.245 11 C -0.131 4.131 12 C -0.188 4.188 13 N -0.154 5.154 14 C -0.139 4.139 15 C 0.061 3.939 16 C -0.135 4.135 17 C -0.052 4.052 18 C -0.247 4.247 19 C 0.468 3.532 20 F -0.146 7.146 21 F -0.160 7.160 22 F -0.163 7.163 23 C 0.112 3.888 24 F -0.116 7.116 25 C -0.162 4.162 26 H 0.111 0.889 27 H 0.135 0.865 28 H 0.167 0.833 29 H 0.185 0.815 30 H 0.171 0.829 31 H 0.196 0.804 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.291 -6.039 2.624 9.106 hybrid contribution -1.201 1.464 -0.006 1.893 sum 5.090 -4.575 2.618 7.327 Atomic orbital electron populations 1.69664 1.09200 1.32215 1.33101 1.26858 0.95289 1.04087 0.90463 0.85642 0.79320 0.76748 0.80295 1.17114 1.20141 1.18171 1.19444 0.93267 0.95998 1.38588 0.90802 1.18574 0.93585 0.92323 0.91264 1.21465 0.97285 1.03520 1.02212 1.21858 0.93606 0.98629 0.98962 1.22494 1.00758 0.95591 1.00003 1.67121 1.13381 1.23634 1.11279 1.19494 0.89728 1.01541 1.03130 1.18510 0.91615 0.93212 0.90586 1.21479 1.00861 0.90799 1.00379 1.21049 0.92074 1.01859 0.90203 1.20089 1.09587 0.91786 1.03231 1.17883 0.75282 0.80338 0.79695 1.93162 1.86535 1.42370 1.92547 1.93208 1.90513 1.91848 1.40423 1.93214 1.30178 1.96562 1.96324 1.17199 0.91912 0.92179 0.87505 1.91504 1.69096 1.92075 1.58931 1.21285 0.99943 1.00272 0.94709 0.88878 0.86506 0.83348 0.81462 0.82906 0.80359 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.57 13.93 21.85 0.30 -40.27 16 2 C 0.05 2.50 5.43 85.30 0.46 2.96 16 3 Si 0.96 38.05 24.55 68.60 1.68 39.73 16 4 H -0.25 -8.99 6.48 99.48 0.64 -8.34 16 5 H -0.28 -10.42 7.11 99.48 0.71 -9.72 16 6 H -0.26 -10.66 7.01 99.48 0.70 -9.96 16 7 C -0.44 -22.13 7.20 23.36 0.17 -21.96 16 8 H 0.07 3.99 6.73 -2.91 -0.02 3.97 16 9 C 0.05 2.19 5.11 -21.03 -0.11 2.09 16 10 C -0.22 -9.14 7.33 22.66 0.17 -8.97 16 11 C -0.11 -3.90 10.03 22.10 0.22 -3.68 16 12 C -0.03 -0.99 11.16 84.86 0.95 -0.04 16 13 N -0.45 -18.07 10.15 -182.93 -1.86 -19.93 16 14 C 0.00 -0.06 6.43 42.47 0.27 0.22 16 15 C 0.06 2.47 5.26 -20.06 -0.11 2.37 16 16 C -0.12 -3.78 9.66 22.54 0.22 -3.56 16 17 C -0.03 -0.96 9.41 22.23 0.21 -0.75 16 18 C -0.24 -7.82 5.39 -19.74 -0.11 -7.92 16 19 C 0.52 15.31 3.02 71.24 0.22 15.53 16 20 F -0.16 -4.14 15.96 44.97 0.72 -3.42 16 21 F -0.18 -5.37 17.04 44.97 0.77 -4.60 16 22 F -0.18 -5.72 17.04 44.97 0.77 -4.95 16 23 C 0.13 4.92 7.12 22.34 0.16 5.08 16 24 F -0.14 -5.28 16.43 44.97 0.74 -4.54 16 25 C -0.14 -5.82 7.85 22.59 0.18 -5.64 16 26 H 0.30 13.33 8.29 -92.71 -0.77 12.56 16 27 H 0.12 4.74 4.58 -2.91 -0.01 4.73 16 28 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 29 H 0.17 4.61 8.06 -2.92 -0.02 4.59 16 30 H 0.15 4.46 8.06 -2.91 -0.02 4.43 16 31 H 0.18 3.60 7.14 -2.91 -0.02 3.58 16 32 H 0.14 6.01 6.75 -2.91 -0.02 5.99 16 Total: -1.00 -53.64 293.74 7.16 -46.48 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 1.14 Total: 15.78 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 2.90 Total: -24.28 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -1.55 Total: -60.20 kcal Atomic # 9 Polarization: -20.51 SS G_CDS: 2.99 Total: -17.52 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 1.68 Total: 39.73 kcal Total: -53.64 7.16 -46.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241908120.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.557 kcal (2) G-P(sol) polarization free energy of solvation -53.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds