Wall clock time and date at job start Tue Mar 31 2020 09:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86802 * 120.00143 * 2 1 4 4 H 1.48496 * 109.47367 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46869 * 300.00370 * 3 2 1 6 6 H 1.48503 * 109.46940 * 59.99948 * 3 2 1 7 7 C 1.40016 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00007 * 180.02562 * 7 2 1 9 9 C 1.41377 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.40727 * 119.76809 * 180.02562 * 9 7 2 11 11 C 1.38250 * 119.18497 * 179.97438 * 10 9 7 12 12 C 1.38730 * 118.68842 * 359.97438 * 11 10 9 13 13 C 1.39858 * 119.46985 * 0.02562 * 12 11 10 14 14 C 1.48316 * 119.61021 * 179.97438 * 13 12 11 15 15 C 1.39407 * 120.11093 * 179.97438 * 14 13 12 16 16 C 1.37992 * 119.92392 * 179.97438 * 15 14 13 17 17 C 1.38320 * 120.15243 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.88485 * 180.02562 * 17 16 15 19 19 F 1.39894 * 109.47289 * 0.02562 * 18 17 16 20 20 F 1.39906 * 109.46554 * 119.99885 * 18 17 16 21 21 F 1.39901 * 109.46754 * 239.99522 * 18 17 16 22 22 C 1.38528 * 120.22649 * 359.97438 * 17 16 15 23 23 F 1.35096 * 119.96257 * 180.02562 * 22 17 16 24 24 C 1.38256 * 120.07240 * 359.78975 * 22 17 16 25 25 N 1.32253 * 120.78283 * 0.27286 * 13 12 11 26 26 H 0.97002 * 120.00335 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.40556 * 359.97438 * 10 9 7 28 28 H 1.07992 * 120.65365 * 179.97438 * 11 10 9 29 29 H 1.08007 * 120.26516 * 179.97438 * 12 11 10 30 30 H 1.08001 * 120.04198 * 359.95580 * 15 14 13 31 31 H 1.08003 * 119.92556 * 180.02562 * 16 15 14 32 32 H 1.07996 * 120.07570 * 180.23210 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0075 -1.2125 -0.0005 8 1 3.0876 -1.2125 -0.0001 9 6 1.3007 -2.4369 -0.0005 10 6 2.0093 -3.6528 -0.0005 11 6 1.3059 -4.8430 0.0000 12 6 -0.0807 -4.7971 0.0011 13 6 -0.7281 -3.5574 0.0010 14 6 -2.2103 -3.5048 0.0016 15 6 -2.8665 -2.2748 0.0021 16 6 -4.2457 -2.2303 0.0021 17 6 -4.9786 -3.4033 0.0021 18 6 -6.4846 -3.3477 0.0015 19 9 -6.9020 -2.0125 0.0004 20 9 -6.9744 -3.9899 -1.1409 21 9 -6.9754 -3.9894 1.1438 22 6 -4.3331 -4.6290 0.0016 23 9 -5.0543 -5.7714 0.0011 24 6 -2.9517 -4.6845 -0.0033 25 7 -0.0343 -2.4315 -0.0054 26 1 -0.4851 0.8400 0.0004 27 1 3.0892 -3.6560 -0.0010 28 1 1.8255 -5.7896 -0.0004 29 1 -0.6555 -5.7115 0.0011 30 1 -2.2960 -1.3577 0.0028 31 1 -4.7540 -1.2774 0.0021 32 1 -2.4484 -5.6400 -0.0075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241908547.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:26 Heat of formation + Delta-G solvation = -150.749621 kcal Electronic energy + Delta-G solvation = -24685.280667 eV Core-core repulsion = 20302.608248 eV Total energy + Delta-G solvation = -4382.672419 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.30671 -50.17314 -48.73777 -48.72028 -40.76722 -39.42866 -35.63580 -34.03166 -32.59926 -31.63911 -31.17828 -27.94480 -26.82968 -24.38729 -24.11459 -22.83582 -22.09018 -19.80479 -19.60574 -19.54113 -19.24301 -18.40067 -17.27225 -17.03791 -16.87085 -16.60874 -15.92935 -15.88181 -15.60889 -15.57730 -15.48760 -15.14992 -14.96765 -14.87741 -14.66980 -14.53034 -14.34696 -14.10005 -13.62933 -13.42457 -12.85611 -12.82622 -12.73773 -12.67553 -12.33728 -12.20075 -11.73147 -11.33487 -10.78518 -10.06626 -9.94545 -9.59068 -9.23038 -8.32270 -6.51453 -0.60742 0.03683 0.90663 1.14165 1.44468 1.50151 1.53127 1.57451 2.24016 2.33467 2.53509 2.75262 2.90897 2.95506 3.29184 3.44377 3.73657 3.93020 4.05816 4.15263 4.28357 4.44927 4.56213 4.72678 4.77042 4.85698 4.98055 5.00214 5.25359 5.42062 5.43929 5.65208 5.68862 5.82322 6.12589 6.25328 6.71477 6.93150 8.06050 8.43457 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.004046 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.967074 B = 6918.197844 C = 8313.655401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.030 3.970 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.464 4.464 8 H 0.088 0.912 9 C 0.222 3.778 10 C -0.283 4.283 11 C -0.058 4.058 12 C -0.292 4.292 13 C 0.141 3.859 14 C 0.026 3.974 15 C -0.103 4.103 16 C -0.042 4.042 17 C -0.232 4.232 18 C 0.521 3.479 19 F -0.169 7.169 20 F -0.177 7.177 21 F -0.177 7.177 22 C 0.140 3.860 23 F -0.128 7.128 24 C -0.141 4.141 25 N -0.491 5.491 26 H 0.281 0.719 27 H 0.112 0.888 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.149 0.851 31 H 0.168 0.832 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.953 -3.447 0.015 9.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.192 4.192 3 Si 0.804 3.196 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.495 4.495 8 H 0.106 0.894 9 C 0.096 3.904 10 C -0.306 4.306 11 C -0.082 4.082 12 C -0.315 4.315 13 C -0.002 4.002 14 C 0.025 3.975 15 C -0.122 4.122 16 C -0.060 4.060 17 C -0.235 4.235 18 C 0.467 3.533 19 F -0.150 7.150 20 F -0.158 7.158 21 F -0.158 7.158 22 C 0.120 3.880 23 F -0.106 7.106 24 C -0.160 4.160 25 N -0.204 5.204 26 H 0.092 0.908 27 H 0.130 0.870 28 H 0.156 0.844 29 H 0.150 0.850 30 H 0.167 0.833 31 H 0.186 0.814 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.599 -2.537 0.006 9.928 hybrid contribution 0.628 -0.397 0.005 0.743 sum -8.971 -2.934 0.011 9.438 Atomic orbital electron populations 1.70104 1.08534 1.29109 1.29149 1.26822 0.95774 1.04040 0.92586 0.85142 0.79388 0.76419 0.78694 1.18164 1.19266 1.19251 1.19977 0.94788 0.90291 1.44429 0.89383 1.18963 0.88366 0.93445 0.89638 1.22067 0.99757 0.93739 1.15010 1.21242 0.93974 0.97724 0.95246 1.21646 0.95220 0.97380 1.17292 1.20097 0.92323 0.90731 0.97054 1.18879 0.91597 0.93068 0.93932 1.21709 0.93705 0.99395 0.97416 1.21040 0.93230 0.97530 0.94200 1.20137 0.91802 0.95168 1.16383 1.17894 0.87750 0.73826 0.73840 1.93174 1.91536 1.34079 1.96214 1.93220 1.89574 1.81941 1.51070 1.93219 1.89549 1.81952 1.51077 1.17016 0.89384 0.80600 1.00984 1.91539 1.77556 1.47897 1.93620 1.21255 0.90783 1.00334 1.03657 1.68635 1.07791 1.26486 1.17458 0.90838 0.86963 0.84395 0.84957 0.83304 0.81425 0.81790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -36.54 11.11 21.83 0.24 -36.29 16 2 C 0.03 1.44 5.50 85.29 0.47 1.91 16 3 Si 0.98 35.86 29.56 68.60 2.03 37.89 16 4 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 5 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 6 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 7 C -0.46 -23.67 9.14 23.47 0.21 -23.45 16 8 H 0.09 4.24 7.85 -2.91 -0.02 4.21 16 9 C 0.22 11.53 6.55 40.27 0.26 11.79 16 10 C -0.28 -12.95 9.83 22.88 0.22 -12.73 16 11 C -0.06 -2.32 10.15 22.39 0.23 -2.09 16 12 C -0.29 -11.66 9.47 22.78 0.22 -11.44 16 13 C 0.14 6.30 6.74 42.16 0.28 6.58 16 14 C 0.03 0.99 5.88 -20.05 -0.12 0.88 16 15 C -0.10 -3.74 9.57 22.49 0.22 -3.52 16 16 C -0.04 -1.23 9.41 22.23 0.21 -1.02 16 17 C -0.23 -6.66 5.38 -19.77 -0.11 -6.76 16 18 C 0.52 13.75 3.02 71.24 0.22 13.96 16 19 F -0.17 -4.14 15.96 44.97 0.72 -3.42 16 20 F -0.18 -4.76 17.04 44.97 0.77 -3.99 16 21 F -0.18 -4.75 17.05 44.97 0.77 -3.99 16 22 C 0.14 4.15 7.12 22.34 0.16 4.31 16 23 F -0.13 -3.66 16.44 44.97 0.74 -2.92 16 24 C -0.14 -4.42 9.40 22.54 0.21 -4.20 16 25 N -0.49 -25.13 6.91 -178.19 -1.23 -26.36 16 26 H 0.28 12.29 8.29 -92.71 -0.77 11.52 16 27 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 28 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 29 H 0.13 4.30 6.17 -2.91 -0.02 4.28 16 30 H 0.15 6.14 7.18 -2.91 -0.02 6.12 16 31 H 0.17 3.98 7.14 -2.91 -0.02 3.96 16 32 H 0.16 4.47 6.17 -2.91 -0.02 4.45 16 Total: -1.00 -55.23 301.46 7.92 -47.31 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 1.20 Total: 17.57 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 2.69 Total: -25.79 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.99 Total: -62.66 kcal Atomic # 9 Polarization: -17.31 SS G_CDS: 2.99 Total: -14.32 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Total: -55.23 7.92 -47.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241908547.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.441 kcal (2) G-P(sol) polarization free energy of solvation -55.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds