Wall clock time and date at job start Tue Mar 31 2020 09:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86805 * 119.99762 * 2 1 4 4 H 1.48499 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47090 * 300.00427 * 3 2 1 6 6 H 1.48505 * 109.47040 * 60.00341 * 3 2 1 7 7 C 1.40039 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00099 * 197.27945 * 7 2 1 9 9 C 1.41527 * 120.00229 * 17.28439 * 7 2 1 10 10 C 1.41145 * 120.98442 * 23.18561 * 9 7 2 11 11 C 1.37743 * 119.07035 * 179.97438 * 10 9 7 12 12 N 1.31915 * 121.15748 * 359.97438 * 11 10 9 13 13 C 1.32791 * 122.21065 * 0.02562 * 12 11 10 14 14 C 1.48370 * 119.61613 * 179.97438 * 13 12 11 15 15 C 1.39375 * 120.11101 * 179.74637 * 14 13 12 16 16 C 1.38006 * 119.92776 * 179.69876 * 15 14 13 17 17 C 1.38303 * 120.14494 * 0.59379 * 16 15 14 18 18 C 1.50710 * 119.88631 * 179.70382 * 17 16 15 19 19 F 1.39898 * 109.46716 * 359.97293 * 18 17 16 20 20 F 1.39901 * 109.47096 * 119.97890 * 18 17 16 21 21 F 1.39898 * 109.46619 * 239.97786 * 18 17 16 22 22 C 1.38524 * 120.22531 * 359.67807 * 17 16 15 23 23 F 1.35099 * 119.96531 * 179.97438 * 22 17 16 24 24 C 1.38265 * 120.06955 * 0.02562 * 22 17 16 25 25 C 1.38901 * 120.77155 * 359.97438 * 13 12 11 26 26 H 0.97000 * 120.00712 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.46176 * 359.97438 * 10 9 7 28 28 H 1.07995 * 119.42267 * 179.71498 * 11 10 9 29 29 H 1.08007 * 120.03663 * 359.97234 * 15 14 13 30 30 H 1.07994 * 119.92439 * 180.27488 * 16 15 14 31 31 H 1.07998 * 120.07496 * 179.97438 * 24 22 17 32 32 H 1.08001 * 120.61841 * 180.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.7012 1.3465 -0.0006 5 1 1.8824 2.3965 -1.2124 6 1 1.8825 2.3965 1.2126 7 6 2.0076 -1.2127 -0.0005 8 1 3.0511 -1.2339 0.2773 9 6 1.3480 -2.4106 -0.3652 10 6 0.1903 -2.3860 -1.1723 11 6 -0.4198 -3.5755 -1.5039 12 7 0.0595 -4.7295 -1.0812 13 6 1.1448 -4.8091 -0.3202 14 6 1.6335 -6.1379 0.1233 15 6 2.7745 -6.2338 0.9179 16 6 3.2222 -7.4713 1.3334 17 6 2.5481 -8.6174 0.9530 18 6 3.0460 -9.9663 1.4047 19 9 4.1923 -9.8014 2.1895 20 9 2.0527 -10.6019 2.1574 21 9 3.3551 -10.7476 0.2861 22 6 1.4166 -8.5298 0.1588 23 9 0.7625 -9.6528 -0.2102 24 6 0.9566 -7.2942 -0.2577 25 6 1.8278 -3.6628 0.0655 26 1 -0.4851 0.8400 0.0004 27 1 -0.2114 -1.4475 -1.5249 28 1 -1.3086 -3.5630 -2.1174 29 1 3.3053 -5.3402 1.2117 30 1 4.1038 -7.5452 1.9528 31 1 0.0746 -7.2258 -0.8773 32 1 2.7105 -3.7304 0.6842 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241908805.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:33 Heat of formation + Delta-G solvation = -152.112178 kcal Electronic energy + Delta-G solvation = -24244.829628 eV Core-core repulsion = 19862.098124 eV Total energy + Delta-G solvation = -4382.731503 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.22918 -48.98053 -47.68753 -47.63048 -39.46208 -38.02342 -34.42235 -32.64061 -31.20105 -30.48540 -29.23575 -26.26543 -25.70845 -23.13698 -22.81331 -21.26627 -20.79346 -18.64248 -18.52667 -18.43270 -17.90965 -16.64132 -16.19660 -15.72825 -15.67339 -14.94092 -14.67661 -14.51022 -14.49855 -14.28282 -14.11337 -14.08726 -13.85712 -13.81017 -13.57170 -13.09197 -13.06431 -12.73049 -12.43981 -12.08655 -11.70562 -11.59451 -11.41095 -11.21218 -11.03324 -10.44290 -10.08853 -9.67072 -9.41633 -8.82990 -8.30632 -8.25372 -7.56340 -7.05573 -4.80580 0.64121 1.20306 2.49538 2.56659 2.60396 2.92095 2.96890 3.03252 3.62900 3.64049 3.71102 3.90204 4.13212 4.37027 4.47677 4.76004 4.77637 5.14351 5.34928 5.43621 5.65195 5.74825 5.90363 5.98906 6.15389 6.30704 6.54109 6.66131 6.76455 6.83087 6.88952 7.08448 7.20304 7.62338 7.84138 8.21869 8.49293 8.52129 9.28560 9.86430 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.027846 B = 0.003051 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.291147 B = 9175.800355 C = 9939.670088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.077 3.923 3 Si 0.914 3.086 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.451 4.451 8 H 0.085 0.915 9 C 0.122 3.878 10 C -0.202 4.202 11 C 0.089 3.911 12 N -0.560 5.560 13 C 0.134 3.866 14 C 0.056 3.944 15 C -0.126 4.126 16 C -0.047 4.047 17 C -0.241 4.241 18 C 0.515 3.485 19 F -0.177 7.177 20 F -0.176 7.176 21 F -0.176 7.176 22 C 0.144 3.856 23 F -0.130 7.130 24 C -0.133 4.133 25 C -0.239 4.239 26 H 0.286 0.714 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.157 0.843 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.683 -9.589 2.016 10.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.481 4.481 8 H 0.103 0.897 9 C 0.115 3.885 10 C -0.224 4.224 11 C -0.063 4.063 12 N -0.274 5.274 13 C 0.001 3.999 14 C 0.055 3.945 15 C -0.145 4.145 16 C -0.065 4.065 17 C -0.244 4.244 18 C 0.461 3.539 19 F -0.158 7.158 20 F -0.157 7.157 21 F -0.158 7.158 22 C 0.124 3.876 23 F -0.108 7.108 24 C -0.152 4.152 25 C -0.263 4.263 26 H 0.097 0.903 27 H 0.148 0.852 28 H 0.144 0.856 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.175 0.825 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.999 -10.289 1.765 11.179 hybrid contribution 0.601 1.208 0.294 1.381 sum 4.600 -9.080 2.059 10.385 Atomic orbital electron populations 1.69746 1.07833 1.29915 1.33012 1.26004 0.94794 1.01801 0.91737 0.86164 0.81007 0.80249 0.78868 1.18118 1.19418 1.19687 1.19673 0.98171 0.90740 1.39565 0.89693 1.17779 0.90867 0.92004 0.87886 1.22352 0.99945 0.98380 1.01722 1.21976 0.98157 0.88201 0.97973 1.67217 1.14089 1.29463 1.16675 1.18931 0.93707 0.89912 0.97319 1.18909 0.91806 0.92277 0.91513 1.21391 0.96762 0.97727 0.98596 1.20751 0.98495 0.90266 0.97030 1.19956 1.01462 0.93304 1.09650 1.18073 0.75217 0.85508 0.75091 1.93152 1.51604 1.95576 1.75470 1.93220 1.61543 1.83963 1.77019 1.93218 1.93105 1.77064 1.52368 1.17208 0.90820 0.83169 0.96375 1.91537 1.79944 1.49730 1.89632 1.21331 1.02580 0.88988 1.02290 1.21881 1.04058 0.92715 1.07638 0.90312 0.85244 0.85630 0.83539 0.83686 0.82533 0.87324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.26 10.90 55.55 0.61 -17.65 16 2 C 0.08 1.75 5.20 -17.35 -0.09 1.66 16 3 Si 0.91 16.81 29.59 -169.99 -5.03 11.78 16 4 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 5 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 6 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 7 C -0.45 -10.74 9.12 -37.65 -0.34 -11.09 16 8 H 0.08 1.92 7.91 -52.48 -0.41 1.51 16 9 C 0.12 2.96 5.61 -106.56 -0.60 2.36 16 10 C -0.20 -4.79 8.80 -38.66 -0.34 -5.13 16 11 C 0.09 1.97 11.15 -17.70 -0.20 1.77 16 12 N -0.56 -12.36 9.39 -9.94 -0.09 -12.45 16 13 C 0.13 2.84 6.73 -83.04 -0.56 2.28 16 14 C 0.06 0.99 5.87 -104.91 -0.62 0.37 16 15 C -0.13 -1.84 9.41 -39.24 -0.37 -2.21 16 16 C -0.05 -0.61 9.41 -39.64 -0.37 -0.98 16 17 C -0.24 -3.41 5.38 -104.49 -0.56 -3.97 16 18 C 0.52 6.90 3.02 36.01 0.11 7.00 16 19 F -0.18 -2.16 15.96 2.25 0.04 -2.13 16 20 F -0.18 -2.45 17.05 2.25 0.04 -2.41 16 21 F -0.18 -2.44 17.04 2.25 0.04 -2.40 16 22 C 0.14 2.22 7.12 -39.47 -0.28 1.94 16 23 F -0.13 -2.01 16.44 2.25 0.04 -1.98 16 24 C -0.13 -2.20 9.55 -39.18 -0.37 -2.58 16 25 C -0.24 -5.25 9.25 -38.35 -0.35 -5.60 16 26 H 0.29 6.02 8.29 -40.82 -0.34 5.68 16 27 H 0.13 3.12 6.16 -52.49 -0.32 2.80 16 28 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 29 H 0.15 1.95 6.17 -52.48 -0.32 1.63 16 30 H 0.15 1.47 7.14 -52.49 -0.37 1.10 16 31 H 0.16 2.65 7.53 -52.49 -0.40 2.25 16 32 H 0.11 2.11 6.18 -52.49 -0.32 1.79 16 LS Contribution 300.76 15.07 4.53 4.53 Total: -1.00 -25.00 300.76 -6.50 -31.50 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -1.71 Total: 5.39 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -4.95 Total: -14.18 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 0.51 Total: -30.11 kcal Atomic # 9 Polarization: -9.07 SS G_CDS: 0.15 Total: -8.92 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -5.03 Total: 11.78 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -25.00 -6.50 -31.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241908805.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.612 kcal (2) G-P(sol) polarization free energy of solvation -25.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds