Wall clock time and date at job start Tue Mar 31 2020 09:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86798 * 120.00326 * 2 1 4 4 H 1.48500 * 109.46698 * 275.40883 * 3 2 1 5 5 H 1.48497 * 109.46960 * 35.40657 * 3 2 1 6 6 H 1.48501 * 109.47284 * 155.40975 * 3 2 1 7 7 C 1.40030 * 119.99503 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00504 * 341.81382 * 7 2 1 9 9 C 1.41055 * 119.99678 * 161.80663 * 7 2 1 10 10 C 1.41303 * 120.55368 * 150.34676 * 9 7 2 11 11 C 1.36602 * 118.41208 * 179.97438 * 10 9 7 12 12 C 1.39895 * 119.47415 * 0.24956 * 11 10 9 13 13 C 1.47963 * 119.45615 * 179.72594 * 12 11 10 14 14 C 1.39639 * 120.13285 * 180.02562 * 13 12 11 15 15 C 1.37917 * 119.90386 * 180.02562 * 14 13 12 16 16 C 1.38379 * 120.17428 * 359.97438 * 15 14 13 17 17 C 1.50694 * 119.86575 * 180.02562 * 16 15 14 18 18 F 1.39894 * 109.47462 * 0.02562 * 17 16 15 19 19 F 1.39910 * 109.46801 * 120.00290 * 17 16 15 20 20 F 1.39896 * 109.47178 * 239.99840 * 17 16 15 21 21 C 1.38586 * 120.26653 * 0.02562 * 16 15 14 22 22 F 1.35095 * 119.95748 * 180.02562 * 21 16 15 23 23 C 1.38192 * 120.09291 * 359.72211 * 21 16 15 24 24 N 1.33027 * 121.09050 * 359.45451 * 12 11 10 25 25 C 1.31264 * 121.72922 * 0.58381 * 24 12 11 26 26 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.79146 * 359.95874 * 10 9 7 28 28 H 1.08002 * 120.26900 * 179.97438 * 11 10 9 29 29 H 1.08001 * 120.04422 * 359.97385 * 14 13 12 30 30 H 1.08005 * 119.91696 * 180.02562 * 15 14 13 31 31 H 1.08001 * 120.08754 * 180.30042 * 23 21 16 32 32 H 1.07999 * 119.80073 * 179.70522 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.3751 2.1122 -1.3939 5 1 1.5012 2.6169 0.8112 6 1 3.5920 1.4098 0.5826 7 6 2.0079 -1.2128 0.0005 8 1 1.5084 -2.1245 0.2928 9 6 3.3656 -1.2435 -0.3809 10 6 4.2426 -2.2091 0.1623 11 6 5.5486 -2.1994 -0.2381 12 6 5.9783 -1.2402 -1.1614 13 6 7.3943 -1.2261 -1.5902 14 6 7.8386 -0.2746 -2.5106 15 6 9.1594 -0.2662 -2.9075 16 6 10.0455 -1.1977 -2.3956 17 6 11.4873 -1.1818 -2.8336 18 9 11.6844 -0.1447 -3.7515 19 9 12.3106 -0.9815 -1.7203 20 9 11.8055 -2.4041 -3.4349 21 6 9.6122 -2.1452 -1.4817 22 9 10.4827 -3.0514 -0.9855 23 6 8.2924 -2.1605 -1.0724 24 7 5.1336 -0.3438 -1.6642 25 6 3.8699 -0.3119 -1.3106 26 1 -0.4850 0.8401 0.0004 27 1 3.8889 -2.9373 0.8772 28 1 6.2449 -2.9235 0.1582 29 1 7.1487 0.4530 -2.9118 30 1 9.5034 0.4699 -3.6191 31 1 7.9559 -2.8959 -0.3566 32 1 3.2125 0.4325 -1.7350 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241908952.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:35 Heat of formation + Delta-G solvation = -151.734349 kcal Electronic energy + Delta-G solvation = -24309.374624 eV Core-core repulsion = 19926.659505 eV Total energy + Delta-G solvation = -4382.715120 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.17952 -48.97335 -47.63978 -47.58206 -39.50526 -38.21339 -34.47862 -32.69374 -31.74434 -30.43545 -30.16004 -26.88166 -24.71859 -23.46615 -22.42217 -21.89692 -20.71599 -18.56333 -18.47879 -18.44578 -18.01542 -17.23627 -16.35611 -15.89273 -15.65641 -15.20037 -14.80571 -14.66810 -14.49901 -14.45726 -14.04414 -13.85915 -13.76761 -13.68367 -13.56797 -13.32990 -13.17430 -12.91392 -12.51163 -12.16722 -12.03894 -11.56439 -11.38950 -11.28806 -11.05555 -10.83482 -10.32386 -9.80093 -9.32869 -8.90716 -8.77425 -8.48353 -7.76807 -7.48396 -4.94139 0.68784 1.26875 2.16426 2.39759 2.67873 2.84938 2.96057 3.02532 3.54459 3.61577 3.72236 3.96069 4.16708 4.23409 4.44485 4.72681 4.98508 5.10616 5.28517 5.36673 5.49650 5.68530 5.89699 5.92729 6.00708 6.17182 6.21442 6.30148 6.54393 6.65325 6.79495 6.84861 7.12394 7.21999 7.54330 7.74396 8.04610 8.17228 9.05096 9.49324 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.031329 B = 0.003163 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.524103 B = 8849.946797 C = 9400.388766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.078 3.922 3 Si 0.914 3.086 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.243 1.243 7 C -0.396 4.396 8 H 0.101 0.899 9 C 0.046 3.954 10 C -0.186 4.186 11 C -0.092 4.092 12 C -0.035 4.035 13 C 0.087 3.913 14 C -0.130 4.130 15 C -0.042 4.042 16 C -0.262 4.262 17 C 0.516 3.484 18 F -0.178 7.178 19 F -0.178 7.178 20 F -0.178 7.178 21 C 0.156 3.844 22 F -0.133 7.133 23 C -0.179 4.179 24 N -0.426 5.426 25 C -0.021 4.021 26 H 0.296 0.704 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.570 0.151 -2.722 12.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.147 4.147 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.166 1.166 7 C -0.423 4.423 8 H 0.119 0.881 9 C 0.041 3.959 10 C -0.210 4.210 11 C -0.112 4.112 12 C -0.166 4.166 13 C 0.085 3.915 14 C -0.149 4.149 15 C -0.060 4.060 16 C -0.265 4.265 17 C 0.462 3.538 18 F -0.160 7.160 19 F -0.160 7.160 20 F -0.160 7.160 21 C 0.137 3.863 22 F -0.111 7.111 23 C -0.199 4.199 24 N -0.133 5.133 25 C -0.189 4.189 26 H 0.107 0.893 27 H 0.133 0.867 28 H 0.128 0.872 29 H 0.165 0.835 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.681 0.763 -3.277 13.120 hybrid contribution 0.150 -0.156 0.688 0.722 sum 12.831 0.607 -2.589 13.104 Atomic orbital electron populations 1.69640 1.08367 1.31687 1.29333 1.26417 0.94962 1.02536 0.90783 0.86246 0.81199 0.78771 0.79933 1.18399 1.20755 1.16595 1.19746 0.92687 0.96492 1.33389 0.88076 1.18734 0.93860 0.92493 0.90849 1.21038 0.92764 1.03538 1.03661 1.21290 0.96348 0.97138 0.96399 1.18548 0.91517 1.00537 1.05981 1.18637 0.91629 0.90639 0.90562 1.21331 0.94708 1.00234 0.98577 1.20767 0.92656 0.95546 0.97045 1.19821 0.92972 1.05058 1.08626 1.18082 0.87308 0.73533 0.74860 1.93141 1.95913 1.59146 1.67754 1.93211 1.75103 1.94763 1.52898 1.93208 1.94087 1.44609 1.84055 1.17036 0.87701 0.87533 0.94041 1.91524 1.68692 1.64949 1.85931 1.21095 0.90667 1.03191 1.04927 1.66854 1.03858 1.20147 1.22444 1.22476 0.91609 1.03458 1.01366 0.89250 0.86697 0.87176 0.83540 0.84159 0.83794 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.59 13.93 55.55 0.77 -16.82 16 2 C 0.08 1.75 5.41 -17.33 -0.09 1.65 16 3 Si 0.91 18.17 24.52 -169.99 -4.17 14.01 16 4 H -0.26 -4.99 6.71 56.52 0.38 -4.62 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.24 -5.12 6.86 56.52 0.39 -4.74 16 7 C -0.40 -9.23 9.58 -37.84 -0.36 -9.59 16 8 H 0.10 2.43 8.06 -52.49 -0.42 2.00 16 9 C 0.05 1.04 5.12 -106.64 -0.55 0.50 16 10 C -0.19 -3.80 9.87 -39.01 -0.39 -4.19 16 11 C -0.09 -1.74 9.38 -39.55 -0.37 -2.11 16 12 C -0.03 -0.69 6.74 -82.74 -0.56 -1.25 16 13 C 0.09 1.49 5.88 -104.90 -0.62 0.87 16 14 C -0.13 -2.02 9.57 -39.18 -0.38 -2.40 16 15 C -0.04 -0.57 9.41 -39.65 -0.37 -0.95 16 16 C -0.26 -3.78 5.39 -104.44 -0.56 -4.34 16 17 C 0.52 7.09 3.02 36.00 0.11 7.20 16 18 F -0.18 -2.27 15.96 2.25 0.04 -2.24 16 19 F -0.18 -2.52 17.04 2.25 0.04 -2.49 16 20 F -0.18 -2.52 17.04 2.25 0.04 -2.48 16 21 C 0.16 2.36 7.12 -39.47 -0.28 2.08 16 22 F -0.13 -1.99 16.44 2.25 0.04 -1.96 16 23 C -0.18 -2.76 9.39 -39.11 -0.37 -3.12 16 24 N -0.43 -9.23 9.39 -9.10 -0.09 -9.31 16 25 C -0.02 -0.47 8.37 -16.77 -0.14 -0.61 16 26 H 0.30 6.04 8.30 -40.82 -0.34 5.70 16 27 H 0.11 2.13 8.06 -52.49 -0.42 1.71 16 28 H 0.11 1.73 6.15 -52.49 -0.32 1.41 16 29 H 0.15 2.27 7.52 -52.49 -0.39 1.88 16 30 H 0.14 1.57 7.14 -52.48 -0.37 1.19 16 31 H 0.14 1.99 6.15 -52.49 -0.32 1.66 16 32 H 0.14 2.94 4.72 -52.49 -0.25 2.69 16 LS Contribution 295.33 15.07 4.45 4.45 Total: -1.00 -23.67 295.33 -5.48 -29.15 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -1.68 Total: 3.95 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -4.92 Total: -16.26 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.69 Total: -26.13 kcal Atomic # 9 Polarization: -9.31 SS G_CDS: 0.15 Total: -9.16 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -4.17 Total: 14.01 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -23.67 -5.48 -29.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241908952.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.583 kcal (2) G-P(sol) polarization free energy of solvation -23.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds