Wall clock time and date at job start Tue Mar 31 2020 09:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30709 * 1 3 3 Si 1.86800 * 119.99852 * 2 1 4 4 H 1.48500 * 109.47167 * 274.97896 * 3 2 1 5 5 H 1.48501 * 109.47145 * 34.98444 * 3 2 1 6 6 H 1.48498 * 109.47190 * 154.98403 * 3 2 1 7 7 C 1.40106 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99691 * 186.31161 * 7 2 1 9 9 C 1.40988 * 120.00033 * 6.30592 * 7 2 1 10 10 C 1.40871 * 119.67941 * 173.67092 * 9 7 2 11 11 C 1.36685 * 119.25095 * 180.02562 * 10 9 7 12 12 C 1.40257 * 118.60740 * 359.97438 * 11 10 9 13 13 C 1.47972 * 120.34957 * 180.02562 * 12 11 10 14 14 C 1.39648 * 120.13689 * 180.02562 * 13 12 11 15 15 C 1.37922 * 119.90433 * 179.72430 * 14 13 12 16 16 C 1.38379 * 120.17161 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.86103 * 180.02562 * 16 15 14 18 18 F 1.39900 * 109.47456 * 0.02562 * 17 16 15 19 19 F 1.39903 * 109.47036 * 120.00479 * 17 16 15 20 20 F 1.39901 * 109.47042 * 239.99946 * 17 16 15 21 21 C 1.38597 * 120.26902 * 0.02562 * 16 15 14 22 22 F 1.35100 * 119.94833 * 180.02562 * 21 16 15 23 23 C 1.38176 * 120.09509 * 0.02562 * 21 16 15 24 24 C 1.40098 * 119.30885 * 0.27956 * 12 11 10 25 25 N 1.31191 * 120.68434 * 359.42046 * 24 12 11 26 26 H 0.96997 * 119.99926 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.37746 * 0.03981 * 10 9 7 28 28 H 1.08005 * 120.69770 * 180.02562 * 11 10 9 29 29 H 1.07994 * 120.04613 * 359.69519 * 14 13 12 30 30 H 1.08004 * 119.91122 * 180.02562 * 15 14 13 31 31 H 1.07995 * 120.08468 * 180.02562 * 23 21 16 32 32 H 1.07993 * 119.65282 * 179.72625 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.3833 2.1072 -1.3948 5 1 1.4951 2.6200 0.8027 6 1 3.5873 1.4121 0.5920 7 6 2.0076 -1.2133 0.0005 8 1 3.0828 -1.2161 0.1034 9 6 1.3091 -2.4307 -0.1330 10 6 2.0267 -3.6357 -0.2661 11 6 1.3406 -4.8107 -0.3956 12 6 -0.0615 -4.7739 -0.3906 13 6 -0.8428 -6.0230 -0.5276 14 6 -2.2386 -5.9811 -0.5226 15 6 -2.9621 -7.1477 -0.6564 16 6 -2.3084 -8.3593 -0.7960 17 6 -3.1058 -9.6297 -0.9422 18 9 -4.4718 -9.3294 -0.9081 19 9 -2.7930 -10.2388 -2.1622 20 9 -2.7928 -10.5001 0.1073 21 6 -0.9233 -8.4092 -0.8019 22 9 -0.2917 -9.5956 -0.9391 23 6 -0.1875 -7.2474 -0.6676 24 6 -0.7146 -3.5414 -0.2599 25 7 -0.0287 -2.4304 -0.1317 26 1 -0.4850 0.8400 -0.0004 27 1 3.1066 -3.6311 -0.2657 28 1 1.8671 -5.7481 -0.4987 29 1 -2.7508 -5.0366 -0.4137 30 1 -4.0416 -7.1153 -0.6529 31 1 0.8917 -7.2864 -0.6727 32 1 -1.7940 -3.5060 -0.2599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241914031.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:54 Heat of formation + Delta-G solvation = -146.109542 kcal Electronic energy + Delta-G solvation = -24188.269735 eV Core-core repulsion = 19805.798525 eV Total energy + Delta-G solvation = -4382.471210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.09568 -48.87566 -47.56020 -47.50022 -39.27472 -37.94971 -34.25432 -32.57646 -31.14166 -30.27634 -29.64123 -26.80466 -24.75551 -23.32629 -22.44366 -21.39654 -20.63850 -18.47924 -18.39721 -18.34518 -17.83994 -16.93783 -16.09170 -15.86040 -15.55172 -15.11125 -14.53374 -14.37988 -14.27738 -14.26025 -14.03642 -13.96875 -13.70981 -13.69200 -13.37003 -12.91638 -12.83146 -12.74574 -12.21645 -12.08751 -11.68967 -11.45933 -11.33992 -11.21782 -11.03950 -10.56972 -10.26686 -9.93549 -9.26295 -8.70667 -8.54124 -7.93304 -7.57372 -6.84149 -4.89101 0.86352 1.38253 2.43103 2.77946 2.81790 2.86671 2.90373 2.91477 3.63204 3.78562 3.83193 4.07249 4.30256 4.42492 4.54642 4.91441 5.18390 5.37037 5.45540 5.56511 5.71981 5.77977 6.02009 6.04774 6.16683 6.33668 6.40176 6.45941 6.69198 6.71346 6.96506 7.03851 7.27287 7.43750 7.65095 7.80780 8.19303 8.49119 9.70088 9.85595 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.037606 B = 0.002815 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.386760 B = 9942.721400 C =10507.477555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.688 5.688 2 C 0.058 3.942 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.387 4.387 8 H 0.093 0.907 9 C 0.248 3.752 10 C -0.267 4.267 11 C -0.029 4.029 12 C -0.296 4.296 13 C 0.099 3.901 14 C -0.166 4.166 15 C -0.031 4.031 16 C -0.280 4.280 17 C 0.517 3.483 18 F -0.180 7.180 19 F -0.180 7.180 20 F -0.180 7.180 21 C 0.163 3.837 22 F -0.135 7.135 23 C -0.195 4.195 24 C 0.173 3.827 25 N -0.489 5.489 26 H 0.282 0.718 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.801 -8.279 -0.992 9.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.306 5.306 2 C -0.171 4.171 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.415 4.415 8 H 0.111 0.889 9 C 0.126 3.874 10 C -0.289 4.289 11 C -0.051 4.051 12 C -0.302 4.302 13 C 0.098 3.902 14 C -0.184 4.184 15 C -0.049 4.049 16 C -0.283 4.283 17 C 0.463 3.537 18 F -0.161 7.161 19 F -0.161 7.161 20 F -0.161 7.161 21 C 0.143 3.857 22 F -0.114 7.114 23 C -0.214 4.214 24 C 0.001 3.999 25 N -0.200 5.200 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.316 -7.324 -0.888 8.548 hybrid contribution 0.786 -0.685 -0.180 1.058 sum -3.530 -8.009 -1.068 8.817 Atomic orbital electron populations 1.70095 1.07543 1.29014 1.23941 1.26288 0.95135 1.01889 0.93781 0.86142 0.80562 0.79816 0.79554 1.19002 1.19621 1.18095 1.19995 0.95383 0.89728 1.36408 0.88904 1.18714 0.88613 0.91983 0.88073 1.21469 0.99158 0.93694 1.14628 1.20689 0.92958 0.96938 0.94526 1.18938 0.93257 0.92256 1.25721 1.18870 0.92439 0.92047 0.86879 1.21209 0.93354 0.98160 1.05666 1.20660 1.00215 0.90115 0.93935 1.19682 0.92444 0.93753 1.22392 1.18097 0.77486 0.84294 0.73824 1.93133 1.33552 1.93175 1.96246 1.93201 1.92729 1.85067 1.45145 1.93201 1.92720 1.72177 1.58037 1.17128 0.88654 0.81309 0.98560 1.91511 1.82404 1.44631 1.92845 1.21076 1.00759 0.90367 1.09235 1.22826 0.98849 0.87730 0.90517 1.68827 1.07253 1.26040 1.17897 0.90686 0.87750 0.88005 0.84454 0.84437 0.84304 0.85530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.22 11.47 55.55 0.64 -15.58 16 2 C 0.06 1.30 5.49 -17.33 -0.10 1.21 16 3 Si 0.92 16.28 29.56 -169.99 -5.03 11.26 16 4 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 5 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 6 H -0.26 -4.49 7.11 56.52 0.40 -4.08 16 7 C -0.39 -9.13 9.11 -37.84 -0.34 -9.48 16 8 H 0.09 2.01 7.86 -52.48 -0.41 1.60 16 9 C 0.25 6.05 6.54 -84.98 -0.56 5.49 16 10 C -0.27 -5.84 9.76 -39.15 -0.38 -6.22 16 11 C -0.03 -0.57 9.46 -39.38 -0.37 -0.95 16 12 C -0.30 -5.91 5.92 -104.45 -0.62 -6.53 16 13 C 0.10 1.71 5.88 -104.89 -0.62 1.10 16 14 C -0.17 -2.51 9.44 -39.17 -0.37 -2.88 16 15 C -0.03 -0.43 9.41 -39.65 -0.37 -0.80 16 16 C -0.28 -4.23 5.39 -104.44 -0.56 -4.79 16 17 C 0.52 7.45 3.02 36.01 0.11 7.56 16 18 F -0.18 -2.39 15.96 2.25 0.04 -2.35 16 19 F -0.18 -2.67 17.04 2.25 0.04 -2.63 16 20 F -0.18 -2.67 17.04 2.25 0.04 -2.63 16 21 C 0.16 2.61 7.12 -39.47 -0.28 2.33 16 22 F -0.14 -2.17 16.44 2.25 0.04 -2.13 16 23 C -0.20 -3.19 9.42 -39.11 -0.37 -3.56 16 24 C 0.17 3.70 10.60 -17.13 -0.18 3.52 16 25 N -0.49 -12.07 7.86 -10.85 -0.09 -12.15 16 26 H 0.28 5.93 8.29 -40.82 -0.34 5.59 16 27 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 28 H 0.10 1.75 6.30 -52.48 -0.33 1.42 16 29 H 0.14 1.87 6.22 -52.49 -0.33 1.55 16 30 H 0.14 1.57 7.14 -52.48 -0.37 1.19 16 31 H 0.14 2.12 6.25 -52.49 -0.33 1.79 16 32 H 0.13 2.36 6.21 -52.49 -0.33 2.03 16 LS Contribution 299.59 15.07 4.51 4.51 Total: -1.00 -25.13 299.59 -6.48 -31.61 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -1.65 Total: 4.11 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -5.01 Total: -14.00 kcal Atomic # 7 Polarization: -28.28 SS G_CDS: 0.55 Total: -27.73 kcal Atomic # 9 Polarization: -9.91 SS G_CDS: 0.15 Total: -9.76 kcal Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.26 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -25.13 -6.48 -31.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241914031.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.502 kcal (2) G-P(sol) polarization free energy of solvation -25.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds