Wall clock time and date at job start Tue Mar 31 2020 09:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86800 * 119.99531 * 2 1 4 4 H 1.48506 * 109.46601 * 239.99974 * 3 2 1 5 5 H 1.48496 * 109.47392 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47490 * 119.99781 * 3 2 1 7 7 C 1.40175 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99494 * 164.79164 * 7 2 1 9 9 C 1.40930 * 120.00490 * 344.78927 * 7 2 1 10 10 C 1.41122 * 121.10634 * 334.75354 * 9 7 2 11 11 C 1.36488 * 119.10737 * 180.33773 * 10 9 7 12 12 N 1.32205 * 121.50474 * 359.66039 * 11 10 9 13 13 C 1.31678 * 122.50369 * 0.02562 * 12 11 10 14 14 C 1.39299 * 120.66148 * 0.02562 * 13 12 11 15 15 C 1.47860 * 120.78143 * 179.97438 * 14 13 12 16 16 C 1.39698 * 120.13663 * 310.00055 * 15 14 13 17 17 C 1.37905 * 119.89456 * 179.97438 * 16 15 14 18 18 C 1.38382 * 120.17902 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.86058 * 180.02562 * 18 17 16 20 20 F 1.39905 * 109.46898 * 0.02562 * 19 18 17 21 21 F 1.39898 * 109.47522 * 119.99930 * 19 18 17 22 22 F 1.39906 * 109.47233 * 240.00229 * 19 18 17 23 23 C 1.38603 * 120.28107 * 0.02562 * 18 17 16 24 24 F 1.35100 * 119.94916 * 179.97438 * 23 18 17 25 25 C 1.38166 * 120.09683 * 359.97438 * 23 18 17 26 26 H 0.96996 * 120.00695 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.44970 * 0.02562 * 10 9 7 28 28 H 1.07994 * 119.24873 * 179.68200 * 11 10 9 29 29 H 1.08001 * 119.67131 * 180.02562 * 13 12 11 30 30 H 1.07997 * 120.04849 * 359.95138 * 16 15 14 31 31 H 1.08004 * 119.90460 * 179.72357 * 17 16 15 32 32 H 1.08004 * 120.08424 * 179.97438 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6964 -1.2126 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6966 1.2124 7 6 2.0077 -1.2139 0.0005 8 1 3.0594 -1.2303 -0.2448 9 6 1.3402 -2.4130 0.3213 10 6 0.1821 -2.4095 1.1276 11 6 -0.4279 -3.5953 1.4186 12 7 0.0377 -4.7433 0.9570 13 6 1.1092 -4.8172 0.1951 14 6 1.8082 -3.6662 -0.1612 15 6 3.0120 -3.7462 -1.0161 16 6 4.0355 -4.6443 -0.7040 17 6 5.1558 -4.7151 -1.5051 18 6 5.2683 -3.8995 -2.6173 19 6 6.4954 -3.9832 -3.4881 20 9 7.3677 -4.9481 -2.9730 21 9 6.1214 -4.3399 -4.7881 22 9 7.1362 -2.7398 -3.5118 23 6 4.2573 -3.0058 -2.9338 24 9 4.3744 -2.2122 -4.0209 25 6 3.1299 -2.9252 -2.1392 26 1 -0.4851 0.8399 -0.0004 27 1 -0.2134 -1.4815 1.5135 28 1 -1.3114 -3.5958 2.0397 29 1 1.4494 -5.7798 -0.1570 30 1 3.9497 -5.2818 0.1635 31 1 5.9492 -5.4062 -1.2615 32 1 2.3423 -2.2285 -2.3857 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241916385.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:25 Heat of formation + Delta-G solvation = -155.141670 kcal Electronic energy + Delta-G solvation = -25075.088622 eV Core-core repulsion = 20692.225749 eV Total energy + Delta-G solvation = -4382.862872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.06636 -48.73931 -47.53250 -47.46881 -39.27531 -37.94118 -34.47696 -32.83365 -30.67342 -30.30330 -29.27845 -26.53557 -25.32415 -22.75274 -22.56284 -21.54750 -20.54521 -18.40069 -18.36626 -18.27880 -17.82703 -16.79098 -16.02257 -15.70271 -15.40810 -14.78890 -14.68290 -14.52281 -14.41759 -14.34273 -14.01172 -13.93837 -13.66454 -13.65983 -13.29630 -12.95969 -12.82186 -12.44987 -12.38238 -12.03224 -11.65929 -11.51350 -11.38225 -11.29863 -11.03492 -10.53740 -10.06783 -9.69810 -9.09032 -8.59011 -8.25784 -8.12569 -7.70374 -7.13653 -4.89311 1.00653 1.47533 2.45403 2.62078 2.79350 2.88156 2.90904 3.06724 3.65189 3.76570 3.84258 4.10874 4.37144 4.39195 4.55674 5.02581 5.23797 5.36784 5.44044 5.61045 5.66283 5.95211 6.10843 6.11928 6.34734 6.40587 6.57237 6.63698 6.75816 6.96258 7.07305 7.08933 7.23801 7.55709 7.79919 8.14753 8.40169 8.42899 9.37274 9.73857 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.014239 B = 0.005229 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.018259 B = 5353.181936 C = 6788.823904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.078 3.922 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.438 4.438 8 H 0.088 0.912 9 C 0.149 3.851 10 C -0.205 4.205 11 C 0.085 3.915 12 N -0.576 5.576 13 C 0.144 3.856 14 C -0.258 4.258 15 C 0.093 3.907 16 C -0.145 4.145 17 C -0.046 4.046 18 C -0.256 4.256 19 C 0.516 3.484 20 F -0.180 7.180 21 F -0.179 7.179 22 F -0.178 7.178 23 C 0.145 3.855 24 F -0.134 7.134 25 C -0.141 4.141 26 H 0.290 0.710 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.689 -3.102 -2.972 8.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.106 0.894 9 C 0.141 3.859 10 C -0.226 4.226 11 C -0.061 4.061 12 N -0.290 5.290 13 C -0.016 4.016 14 C -0.264 4.264 15 C 0.091 3.909 16 C -0.164 4.164 17 C -0.064 4.064 18 C -0.259 4.259 19 C 0.461 3.539 20 F -0.161 7.161 21 F -0.160 7.160 22 F -0.159 7.159 23 C 0.126 3.874 24 F -0.112 7.112 25 C -0.160 4.160 26 H 0.101 0.899 27 H 0.146 0.854 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.994 -3.647 -2.782 8.364 hybrid contribution 0.973 1.826 -0.620 2.160 sum 7.967 -1.821 -3.402 8.852 Atomic orbital electron populations 1.69703 1.07855 1.30493 1.31299 1.26060 0.94826 1.01886 0.91673 0.86286 0.80324 0.79356 0.80722 1.18299 1.19832 1.18304 1.19669 0.97662 0.90507 1.38874 0.89416 1.17696 0.90128 0.90960 0.87116 1.21955 0.99820 0.98437 1.02427 1.21783 0.98035 0.88760 0.97537 1.67364 1.15754 1.29157 1.16768 1.22113 0.91061 0.95613 0.92850 1.19399 1.01432 0.95556 1.10015 1.18755 0.92269 0.89603 0.90237 1.21378 0.93031 1.01291 1.00674 1.20665 0.98192 0.96045 0.91516 1.19831 0.96050 1.07290 1.02689 1.18119 0.83500 0.73585 0.78647 1.93135 1.71882 1.64278 1.86794 1.93204 1.91372 1.91785 1.39630 1.93213 1.83536 1.42696 1.96475 1.17219 0.94823 0.90254 0.85143 1.91519 1.96099 1.71819 1.51763 1.21470 0.97191 1.02435 0.94874 0.89898 0.85379 0.86139 0.85731 0.84667 0.84372 0.83055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.48 10.92 55.56 0.61 -16.88 16 2 C 0.08 1.72 5.22 -17.31 -0.09 1.63 16 3 Si 0.91 16.89 29.59 -169.99 -5.03 11.86 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 6 H -0.26 -4.81 7.11 56.52 0.40 -4.40 16 7 C -0.44 -10.07 7.31 -37.84 -0.28 -10.35 16 8 H 0.09 1.98 6.72 -52.48 -0.35 1.63 16 9 C 0.15 3.48 5.59 -106.26 -0.59 2.88 16 10 C -0.20 -4.75 8.72 -39.12 -0.34 -5.09 16 11 C 0.09 1.87 11.09 -18.02 -0.20 1.67 16 12 N -0.58 -12.77 10.32 -13.37 -0.14 -12.91 16 13 C 0.14 2.97 10.71 -17.22 -0.18 2.79 16 14 C -0.26 -5.49 5.54 -104.04 -0.58 -6.06 16 15 C 0.09 1.72 4.99 -104.90 -0.52 1.20 16 16 C -0.15 -2.26 9.55 -39.16 -0.37 -2.64 16 17 C -0.05 -0.66 9.41 -39.65 -0.37 -1.03 16 18 C -0.26 -4.06 5.39 -104.43 -0.56 -4.62 16 19 C 0.52 7.72 3.02 36.01 0.11 7.83 16 20 F -0.18 -2.44 15.96 2.25 0.04 -2.40 16 21 F -0.18 -2.74 17.04 2.25 0.04 -2.70 16 22 F -0.18 -2.79 17.04 2.25 0.04 -2.75 16 23 C 0.15 2.55 7.12 -39.47 -0.28 2.27 16 24 F -0.13 -2.39 16.44 2.25 0.04 -2.35 16 25 C -0.14 -2.64 8.07 -39.10 -0.32 -2.95 16 26 H 0.29 5.98 8.29 -40.82 -0.34 5.64 16 27 H 0.13 3.02 6.24 -52.49 -0.33 2.69 16 28 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 29 H 0.13 2.21 8.05 -52.49 -0.42 1.79 16 30 H 0.14 1.86 8.05 -52.49 -0.42 1.44 16 31 H 0.14 1.59 7.14 -52.48 -0.37 1.21 16 32 H 0.15 3.02 7.39 -52.48 -0.39 2.63 16 LS Contribution 300.28 15.07 4.53 4.53 Total: -1.00 -24.22 300.28 -6.31 -30.54 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -1.84 Total: 5.54 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -4.58 Total: -12.47 kcal Atomic # 7 Polarization: -30.26 SS G_CDS: 0.47 Total: -29.79 kcal Atomic # 9 Polarization: -10.35 SS G_CDS: 0.15 Total: -10.20 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -24.22 -6.31 -30.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241916385.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.606 kcal (2) G-P(sol) polarization free energy of solvation -24.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds