Wall clock time and date at job start Tue Mar 31 2020 09:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86801 * 120.00170 * 2 1 4 4 H 1.48500 * 109.47302 * 275.00167 * 3 2 1 5 5 H 1.48496 * 109.47090 * 35.00134 * 3 2 1 6 6 H 1.48497 * 109.47226 * 154.99888 * 3 2 1 7 7 C 1.39925 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00278 * 175.70707 * 7 2 1 9 9 C 1.41428 * 119.99789 * 355.69597 * 7 2 1 10 10 C 1.40750 * 120.17495 * 214.65442 * 9 7 2 11 11 C 1.37895 * 119.96462 * 180.02562 * 10 9 7 12 12 F 1.35099 * 119.83246 * 180.02562 * 11 10 9 13 13 C 1.38668 * 120.32819 * 0.02562 * 11 10 9 14 14 C 1.39648 * 120.35249 * 359.97438 * 13 11 10 15 15 C 1.48416 * 119.98634 * 179.97438 * 14 13 11 16 16 C 1.39325 * 120.53693 * 237.91206 * 15 14 13 17 17 N 1.31717 * 120.60185 * 179.97438 * 16 15 14 18 18 C 1.31925 * 121.84815 * 0.02562 * 17 16 15 19 19 C 1.38267 * 121.02449 * 0.02562 * 18 17 16 20 20 C 1.38456 * 119.28645 * 359.97438 * 19 18 17 21 21 C 1.50701 * 120.84118 * 180.02562 * 20 19 18 22 22 F 1.39893 * 109.47461 * 353.36973 * 21 20 19 23 23 F 1.39902 * 109.46803 * 113.36907 * 21 20 19 24 24 F 1.39901 * 109.46861 * 233.36371 * 21 20 19 25 25 C 1.38772 * 120.02653 * 0.25129 * 14 13 11 26 26 H 0.97005 * 119.99578 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.01241 * 0.05252 * 10 9 7 28 28 H 1.08006 * 119.82135 * 180.02562 * 13 11 10 29 29 H 1.08003 * 119.70107 * 359.97438 * 16 15 14 30 30 H 1.07995 * 119.48454 * 180.02562 * 18 17 16 31 31 H 1.08005 * 120.35504 * 179.97438 * 19 18 17 32 32 H 1.07999 * 120.16139 * 179.73946 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3842 2.1075 -1.3947 5 1 1.4967 2.6198 0.8031 6 1 3.5887 1.4120 0.5917 7 6 2.0079 -1.2118 -0.0005 8 1 3.0856 -1.2131 -0.0706 9 6 1.3037 -2.4349 0.0908 10 6 1.8620 -3.5222 0.7887 11 6 1.1719 -4.7129 0.8746 12 9 1.7100 -5.7548 1.5456 13 6 -0.0717 -4.8463 0.2758 14 6 -0.6383 -3.7762 -0.4199 15 6 -1.9695 -3.9280 -1.0583 16 6 -2.1264 -3.7186 -2.4267 17 7 -3.3072 -3.8534 -2.9946 18 6 -4.3788 -4.1879 -2.3017 19 6 -4.3053 -4.4117 -0.9392 20 6 -3.0858 -4.2823 -0.2965 21 6 -2.9655 -4.5186 1.1870 22 9 -4.2389 -4.7099 1.7336 23 9 -2.1840 -5.6562 1.4160 24 9 -2.3616 -3.4092 1.7885 25 6 0.0455 -2.5727 -0.5196 26 1 -0.4850 0.8401 0.0004 27 1 2.8302 -3.4238 1.2570 28 1 -0.6053 -5.7825 0.3486 29 1 -1.2721 -3.4431 -3.0274 30 1 -5.3283 -4.2883 -2.8065 31 1 -5.1896 -4.6846 -0.3824 32 1 -0.3888 -1.7451 -1.0607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242278009.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:31 Heat of formation + Delta-G solvation = -141.547710 kcal Electronic energy + Delta-G solvation = -25753.900475 eV Core-core repulsion = 21371.627081 eV Total energy + Delta-G solvation = -4382.273394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.86820 -47.85530 -47.45019 -47.20538 -40.15397 -37.50725 -34.08902 -33.12841 -31.95473 -29.64217 -28.53701 -26.34384 -25.61884 -23.72797 -22.43970 -21.09796 -20.54685 -18.49177 -18.25160 -18.13477 -17.62451 -16.08372 -15.88014 -15.41970 -15.24428 -15.05175 -14.83448 -14.59862 -14.51958 -14.14335 -14.03570 -13.70724 -13.64367 -13.41149 -13.38707 -13.33779 -12.83050 -12.21090 -12.01536 -11.83984 -11.72673 -11.35883 -11.15054 -10.63163 -10.56370 -10.35518 -10.00315 -9.83714 -9.56708 -9.36652 -8.96613 -7.65876 -7.40550 -6.83873 -4.65565 0.91628 1.08212 2.42618 2.58601 2.87874 2.99349 3.01282 3.06672 3.73204 3.82805 3.91966 4.25802 4.38225 4.47090 4.70639 4.87843 4.95117 5.09420 5.27895 5.38963 5.67023 5.77196 5.82556 6.07529 6.16066 6.40394 6.65772 6.67825 6.79632 7.04605 7.24306 7.38370 7.59023 7.80980 7.92899 7.97838 8.33881 8.61802 8.67348 10.06953 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.005895 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.112644 B = 4748.759054 C = 5622.651418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.082 0.918 9 C 0.122 3.878 10 C -0.238 4.238 11 C 0.111 3.889 12 F -0.164 7.164 13 C -0.251 4.251 14 C -0.056 4.056 15 C -0.004 4.004 16 C 0.112 3.888 17 N -0.462 5.462 18 C 0.081 3.919 19 C -0.128 4.128 20 C -0.139 4.139 21 C 0.511 3.489 22 F -0.185 7.185 23 F -0.167 7.167 24 F -0.157 7.157 25 C -0.119 4.119 26 H 0.282 0.718 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.170 0.830 30 H 0.162 0.838 31 H 0.145 0.855 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.576 -4.475 -1.911 9.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.145 4.145 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.120 3.880 10 C -0.258 4.258 11 C 0.092 3.908 12 F -0.143 7.143 13 C -0.271 4.271 14 C -0.057 4.057 15 C -0.006 4.006 16 C -0.046 4.046 17 N -0.170 5.170 18 C -0.076 4.076 19 C -0.148 4.148 20 C -0.149 4.149 21 C 0.457 3.543 22 F -0.166 7.166 23 F -0.148 7.148 24 F -0.138 7.138 25 C -0.138 4.138 26 H 0.093 0.907 27 H 0.127 0.873 28 H 0.135 0.865 29 H 0.187 0.813 30 H 0.179 0.821 31 H 0.163 0.837 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.847 -4.199 -2.743 9.313 hybrid contribution 0.430 0.409 1.503 1.616 sum -7.416 -3.790 -1.240 8.421 Atomic orbital electron populations 1.69708 1.07370 1.29355 1.36446 1.25917 0.94998 1.01461 0.92159 0.86109 0.80348 0.80101 0.79115 1.19348 1.20076 1.18489 1.19546 0.95008 0.89654 1.44456 0.89982 1.17351 0.91492 0.91498 0.87701 1.21212 1.02536 0.93900 1.08145 1.17330 0.93254 0.84161 0.96015 1.91355 1.86315 1.57667 1.78959 1.20688 0.97236 0.99936 1.09207 1.18093 0.91578 0.95437 1.00559 1.19817 0.93271 0.93187 0.94330 1.23068 0.95167 0.95299 0.91074 1.67639 0.99197 1.09864 1.40264 1.22699 0.97561 0.96837 0.90455 1.21902 0.96936 0.99322 0.96644 1.20524 0.95971 1.06145 0.92216 1.18059 0.73388 0.75105 0.87738 1.93130 1.40564 1.95194 1.87749 1.93184 1.74404 1.51827 1.95432 1.93315 1.83216 1.52302 1.85006 1.21735 0.96296 0.94691 1.01105 0.90657 0.87318 0.86496 0.81308 0.82070 0.83697 0.84353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.50 10.62 55.55 0.59 -18.91 16 2 C 0.07 1.68 5.42 -17.35 -0.09 1.59 16 3 Si 0.92 17.83 29.56 -169.99 -5.03 12.81 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.46 -11.25 9.04 -37.74 -0.34 -11.59 16 8 H 0.08 1.94 7.85 -52.49 -0.41 1.52 16 9 C 0.12 3.03 5.55 -106.87 -0.59 2.44 16 10 C -0.24 -5.63 9.76 -38.76 -0.38 -6.01 16 11 C 0.11 2.55 7.28 -39.55 -0.29 2.26 16 12 F -0.16 -3.60 17.26 2.25 0.04 -3.56 16 13 C -0.25 -5.45 7.86 -38.90 -0.31 -5.76 16 14 C -0.06 -1.19 4.10 -104.98 -0.43 -1.62 16 15 C 0.00 -0.07 5.36 -104.75 -0.56 -0.63 16 16 C 0.11 1.87 10.81 -17.20 -0.19 1.68 16 17 N -0.46 -7.11 10.35 -12.98 -0.13 -7.24 16 18 C 0.08 1.03 11.17 -17.50 -0.20 0.84 16 19 C -0.13 -1.72 9.49 -39.49 -0.37 -2.09 16 20 C -0.14 -2.34 5.43 -103.99 -0.56 -2.91 16 21 C 0.51 8.96 2.81 36.01 0.10 9.06 16 22 F -0.18 -2.83 16.10 2.25 0.04 -2.79 16 23 F -0.17 -3.03 13.52 2.25 0.03 -3.00 16 24 F -0.16 -3.22 16.10 2.25 0.04 -3.19 16 25 C -0.12 -2.80 8.26 -38.52 -0.32 -3.12 16 26 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 27 H 0.11 2.45 8.06 -52.49 -0.42 2.02 16 28 H 0.12 2.41 5.82 -52.48 -0.31 2.10 16 29 H 0.17 2.62 8.06 -52.48 -0.42 2.20 16 30 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.15 1.52 7.29 -52.48 -0.38 1.14 16 32 H 0.14 3.37 6.15 -52.49 -0.32 3.05 16 LS Contribution 296.72 15.07 4.47 4.47 Total: -1.00 -26.19 296.72 -6.31 -32.51 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -1.83 Total: 4.78 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -4.53 Total: -15.86 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.46 Total: -26.16 kcal Atomic # 9 Polarization: -12.69 SS G_CDS: 0.14 Total: -12.55 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.19 -6.31 -32.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242278009.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.042 kcal (2) G-P(sol) polarization free energy of solvation -26.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds