Wall clock time and date at job start Tue Mar 31 2020 09:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30804 * 1 3 3 Si 1.86803 * 119.99500 * 2 1 4 4 H 1.48493 * 109.47169 * 269.99937 * 3 2 1 5 5 H 1.48504 * 109.47149 * 30.00264 * 3 2 1 6 6 H 1.48509 * 109.46852 * 150.00181 * 3 2 1 7 7 C 1.40048 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99585 * 163.30289 * 7 2 1 9 9 C 1.40818 * 119.99830 * 343.30789 * 7 2 1 10 10 C 1.40791 * 120.30246 * 335.61641 * 9 7 2 11 11 C 1.36355 * 120.02145 * 180.25417 * 10 9 7 12 12 C 1.39214 * 120.64592 * 359.79444 * 11 10 9 13 13 F 1.35096 * 119.69480 * 180.02562 * 12 11 10 14 14 C 1.38403 * 120.61194 * 359.96879 * 12 11 10 15 15 C 1.39048 * 119.95535 * 0.02562 * 14 12 11 16 16 C 1.47897 * 120.31550 * 179.97438 * 15 14 12 17 17 C 1.39641 * 120.56622 * 104.21784 * 16 15 14 18 18 N 1.31656 * 120.55490 * 180.28232 * 17 16 15 19 19 C 1.31951 * 121.88643 * 359.72378 * 18 17 16 20 20 C 1.38342 * 121.08548 * 359.97099 * 19 18 17 21 21 C 1.38368 * 119.31648 * 0.02788 * 20 19 18 22 22 C 1.50696 * 120.85566 * 179.97438 * 21 20 19 23 23 F 1.39903 * 109.47256 * 4.17973 * 22 21 20 24 24 F 1.39897 * 109.47446 * 244.17743 * 22 21 20 25 25 F 1.39907 * 109.47077 * 124.17947 * 22 21 20 26 26 H 0.96995 * 119.99765 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99128 * 0.02871 * 10 9 7 28 28 H 1.07995 * 119.67764 * 179.76789 * 11 10 9 29 29 H 1.07993 * 120.02181 * 180.02562 * 14 12 11 30 30 H 1.08005 * 119.71820 * 0.02691 * 17 16 15 31 31 H 1.07999 * 119.46192 * 179.97438 * 19 18 17 32 32 H 1.08004 * 120.34118 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.4894 2.0465 -1.4000 5 1 1.4393 2.6527 0.7001 6 1 3.5396 1.4403 0.7001 7 6 2.0083 -1.2128 -0.0005 8 1 3.0542 -1.2323 -0.2693 9 6 1.3488 -2.4068 0.3492 10 6 0.2023 -2.3722 1.1656 11 6 -0.4289 -3.5322 1.5050 12 6 0.0463 -4.7585 1.0483 13 9 -0.5943 -5.8959 1.3960 14 6 1.1682 -4.8229 0.2404 15 6 1.8314 -3.6555 -0.1213 16 6 3.0313 -3.7152 -0.9838 17 6 2.9553 -3.3591 -2.3319 18 7 4.0224 -3.4176 -3.1008 19 6 5.1955 -3.8046 -2.6368 20 6 5.3549 -4.1678 -1.3115 21 6 4.2643 -4.1239 -0.4610 22 6 4.3986 -4.5124 0.9888 23 9 5.7392 -4.7928 1.2742 24 9 3.6207 -5.6474 1.2415 25 9 3.9605 -3.4575 1.7967 26 1 -0.4849 0.8400 -0.0004 27 1 -0.1753 -1.4268 1.5262 28 1 -1.3057 -3.4995 2.1346 29 1 1.5283 -5.7793 -0.1088 30 1 2.0122 -3.0369 -2.7482 31 1 6.0451 -3.8385 -3.3026 32 1 6.3207 -4.4823 -0.9444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242279447.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:00 Heat of formation + Delta-G solvation = -146.067610 kcal Electronic energy + Delta-G solvation = -26086.593789 eV Core-core repulsion = 21704.124398 eV Total energy + Delta-G solvation = -4382.469391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.71892 -47.55247 -47.30025 -47.07241 -39.91892 -37.52317 -33.91720 -33.16392 -31.82652 -29.62369 -28.86480 -26.25953 -25.30741 -23.41179 -22.23612 -21.25680 -20.40593 -18.23895 -18.10505 -17.99466 -17.57557 -16.47705 -15.80649 -15.61495 -14.99750 -14.81627 -14.65530 -14.30758 -14.18923 -14.04037 -13.91103 -13.59567 -13.46344 -13.30024 -13.27864 -13.16089 -12.70042 -12.26404 -12.08285 -11.85365 -11.63669 -11.46246 -11.25351 -10.98988 -10.55542 -10.23699 -9.85641 -9.75528 -9.43138 -9.26078 -8.63537 -7.80690 -7.53310 -7.07487 -4.65169 1.16959 1.35969 2.41854 2.59397 2.93268 2.94986 3.02205 3.03583 3.72267 3.94593 4.07550 4.28169 4.41970 4.69507 4.85221 5.07369 5.17514 5.25239 5.39740 5.66355 5.85440 5.95009 6.00001 6.02091 6.27686 6.38580 6.71410 6.80560 6.90089 6.96058 7.18912 7.40204 7.64619 7.71298 7.92246 8.18162 8.26655 8.52122 8.60079 9.83811 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.010488 B = 0.008077 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.050856 B = 3465.883316 C = 4763.226845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.078 3.922 3 Si 0.908 3.092 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.437 4.437 8 H 0.080 0.920 9 C 0.137 3.863 10 C -0.135 4.135 11 C -0.118 4.118 12 C -0.046 4.046 13 F -0.172 7.172 14 C -0.078 4.078 15 C -0.206 4.206 16 C 0.034 3.966 17 C 0.118 3.882 18 N -0.466 5.466 19 C 0.073 3.927 20 C -0.132 4.132 21 C -0.150 4.150 22 C 0.513 3.487 23 F -0.187 7.187 24 F -0.172 7.172 25 F -0.160 7.160 26 H 0.287 0.713 27 H 0.132 0.868 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.167 0.833 31 H 0.158 0.842 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.980 -2.912 -1.154 7.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.143 4.143 3 Si 0.731 3.269 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.465 4.465 8 H 0.098 0.902 9 C 0.134 3.866 10 C -0.154 4.154 11 C -0.137 4.137 12 C -0.066 4.066 13 F -0.151 7.151 14 C -0.097 4.097 15 C -0.209 4.209 16 C 0.032 3.968 17 C -0.040 4.040 18 N -0.174 5.174 19 C -0.082 4.082 20 C -0.152 4.152 21 C -0.159 4.159 22 C 0.459 3.541 23 F -0.169 7.169 24 F -0.153 7.153 25 F -0.141 7.141 26 H 0.099 0.901 27 H 0.150 0.850 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.184 0.816 31 H 0.175 0.825 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.691 -2.558 -1.999 7.437 hybrid contribution 0.325 0.278 1.219 1.292 sum 7.016 -2.280 -0.780 7.418 Atomic orbital electron populations 1.69762 1.07686 1.30125 1.32395 1.25997 0.94786 1.01722 0.91796 0.86284 0.80848 0.80065 0.79694 1.19049 1.19683 1.18129 1.19517 0.97736 0.90816 1.38461 0.90183 1.17406 0.90575 0.90532 0.88056 1.20997 0.97904 0.96824 0.99690 1.20535 1.00110 0.91866 1.01201 1.17089 0.98290 0.81369 1.09819 1.91296 1.81858 1.50027 1.91929 1.20416 0.94631 0.96826 0.97839 1.18027 1.00216 0.93793 1.08858 1.19483 0.91837 0.91024 0.94457 1.23169 0.97079 0.94644 0.89128 1.67597 0.99360 1.11338 1.39123 1.22625 0.95544 0.97131 0.92933 1.21839 0.98542 0.99920 0.94922 1.20678 0.96280 1.06545 0.92374 1.18075 0.73010 0.75392 0.87664 1.93119 1.35162 1.93882 1.94731 1.93220 1.74905 1.52058 1.95153 1.93289 1.89179 1.56485 1.75124 0.90143 0.85048 0.87938 0.87901 0.81580 0.82513 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.82 10.87 55.55 0.60 -17.22 16 2 C 0.08 1.75 5.17 -17.31 -0.09 1.66 16 3 Si 0.91 17.24 29.59 -169.99 -5.03 12.21 16 4 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 7 C -0.44 -10.32 8.41 -37.93 -0.32 -10.64 16 8 H 0.08 1.89 7.25 -52.49 -0.38 1.51 16 9 C 0.14 3.26 5.59 -106.56 -0.60 2.67 16 10 C -0.14 -3.20 8.63 -39.30 -0.34 -3.54 16 11 C -0.12 -2.65 9.94 -39.90 -0.40 -3.05 16 12 C -0.05 -1.04 7.31 -39.16 -0.29 -1.33 16 13 F -0.17 -3.81 17.26 2.25 0.04 -3.77 16 14 C -0.08 -1.71 8.09 -39.22 -0.32 -2.03 16 15 C -0.21 -4.54 3.84 -104.24 -0.40 -4.94 16 16 C 0.03 0.67 4.07 -104.75 -0.43 0.25 16 17 C 0.12 2.18 10.84 -17.10 -0.19 2.00 16 18 N -0.47 -7.91 10.34 -12.88 -0.13 -8.04 16 19 C 0.07 1.05 11.17 -17.46 -0.20 0.85 16 20 C -0.13 -1.94 9.49 -39.50 -0.37 -2.31 16 21 C -0.15 -2.67 5.43 -103.91 -0.56 -3.23 16 22 C 0.51 9.28 2.91 36.00 0.10 9.39 16 23 F -0.19 -2.98 16.09 2.25 0.04 -2.95 16 24 F -0.17 -3.23 15.14 2.25 0.03 -3.20 16 25 F -0.16 -3.26 16.37 2.25 0.04 -3.22 16 26 H 0.29 5.99 8.29 -40.82 -0.34 5.66 16 27 H 0.13 3.15 6.09 -52.49 -0.32 2.83 16 28 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 29 H 0.10 2.12 7.75 -52.49 -0.41 1.71 16 30 H 0.17 3.01 8.06 -52.48 -0.42 2.59 16 31 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.14 1.65 7.27 -52.48 -0.38 1.27 16 LS Contribution 298.70 15.07 4.50 4.50 Total: -1.00 -25.12 298.70 -6.19 -31.31 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -1.89 Total: 4.62 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -4.38 Total: -14.25 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.47 Total: -25.26 kcal Atomic # 9 Polarization: -13.28 SS G_CDS: 0.15 Total: -13.13 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -25.12 -6.19 -31.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242279447.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.759 kcal (2) G-P(sol) polarization free energy of solvation -25.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds