Wall clock time and date at job start Tue Mar 31 2020 09:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86809 * 119.99648 * 2 1 4 4 H 1.48500 * 109.47015 * 274.65119 * 3 2 1 5 5 H 1.48500 * 109.47149 * 34.65103 * 3 2 1 6 6 H 1.48496 * 109.47099 * 154.65000 * 3 2 1 7 7 C 1.40002 * 120.00378 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99949 * 162.13612 * 7 2 1 9 9 C 1.41036 * 119.99810 * 342.13270 * 7 2 1 10 10 C 1.40971 * 120.10126 * 155.00705 * 9 7 2 11 11 C 1.36233 * 119.92642 * 180.02562 * 10 9 7 12 12 C 1.39932 * 120.14240 * 359.97438 * 11 10 9 13 13 C 1.47960 * 119.89295 * 179.97438 * 12 11 10 14 14 C 1.39621 * 120.56598 * 65.25515 * 13 12 11 15 15 N 1.31665 * 120.55966 * 180.28543 * 14 13 12 16 16 C 1.31952 * 121.87713 * 359.73557 * 15 14 13 17 17 C 1.38339 * 121.08624 * 359.97438 * 16 15 14 18 18 C 1.38364 * 119.31320 * 0.02562 * 17 16 15 19 19 C 1.50705 * 120.85451 * 179.97438 * 18 17 16 20 20 F 1.39897 * 109.46790 * 0.02562 * 19 18 17 21 21 F 1.39899 * 109.47228 * 239.99952 * 19 18 17 22 22 F 1.39903 * 109.46858 * 119.99952 * 19 18 17 23 23 C 1.40142 * 120.20898 * 0.26370 * 12 11 10 24 24 F 1.35100 * 119.96224 * 179.72212 * 23 12 11 25 25 C 1.36488 * 120.07237 * 359.47405 * 23 12 11 26 26 H 0.96998 * 120.00305 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.03703 * 359.97438 * 10 9 7 28 28 H 1.07999 * 119.92897 * 179.97438 * 11 10 9 29 29 H 1.07998 * 119.71713 * 359.97438 * 14 13 12 30 30 H 1.07999 * 119.45313 * 180.02562 * 16 15 14 31 31 H 1.07998 * 120.34166 * 180.02562 * 17 16 15 32 32 H 1.07997 * 120.07244 * 180.25952 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6179 0.0000 4 1 2.3911 2.1033 -1.3955 5 1 1.4920 2.6224 0.7960 6 1 3.5852 1.4140 0.5994 7 6 2.0081 -1.2124 0.0005 8 1 3.0491 -1.2350 -0.2864 9 6 1.3540 -2.4042 0.3758 10 6 1.8234 -3.6470 -0.0958 11 6 1.1885 -4.7960 0.2686 12 6 0.0718 -4.7452 1.1103 13 6 -0.6139 -5.9964 1.5020 14 6 0.0390 -6.9475 2.2886 15 7 -0.5693 -8.0634 2.6324 16 6 -1.8072 -8.3261 2.2585 17 6 -2.5240 -7.4322 1.4833 18 6 -1.9302 -6.2444 1.0949 19 6 -2.6789 -5.2460 0.2500 20 9 -3.9616 -5.7339 -0.0215 21 9 -1.9921 -5.0442 -0.9520 22 9 -2.7782 -4.0328 0.9397 23 6 -0.4028 -3.5125 1.5785 24 9 -1.4847 -3.4688 2.3864 25 6 0.2299 -2.3564 1.2233 26 1 -0.4850 0.8400 -0.0004 27 1 2.6849 -3.6882 -0.7458 28 1 1.5478 -5.7481 -0.0930 29 1 1.0533 -6.7686 2.6134 30 1 -2.2685 -9.2538 2.5633 31 1 -3.5367 -7.6592 1.1844 32 1 -0.1334 -1.4068 1.5875 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242279587.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:41:14 Heat of formation + Delta-G solvation = -141.995291 kcal Electronic energy + Delta-G solvation = -26001.931572 eV Core-core repulsion = 21619.638770 eV Total energy + Delta-G solvation = -4382.292802 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.69481 -47.80574 -47.22145 -46.98570 -39.98204 -37.52185 -34.30411 -33.07135 -31.76619 -29.29313 -29.18048 -26.53659 -25.52442 -23.14101 -22.23187 -21.30384 -20.53193 -18.30497 -18.08735 -17.98912 -17.79769 -16.11662 -15.98253 -15.70704 -15.14184 -15.01507 -14.87196 -14.73902 -14.23540 -13.91115 -13.79327 -13.60185 -13.43964 -13.26681 -13.18178 -12.82363 -12.75043 -12.36174 -12.03872 -11.80012 -11.72838 -11.32285 -11.22319 -10.84138 -10.58007 -10.23745 -10.01304 -9.84721 -9.51345 -9.39174 -8.83104 -7.69674 -7.52762 -7.07448 -4.70143 1.03026 1.17259 2.39078 2.77508 2.91919 2.93831 2.99794 3.03708 3.70329 3.79556 4.07832 4.25984 4.39880 4.54239 4.87377 5.02046 5.07318 5.18553 5.34136 5.52764 5.64424 5.87185 5.88061 6.04068 6.24123 6.53265 6.68604 6.75433 6.76844 6.96158 7.35933 7.44210 7.57282 7.70228 7.96617 8.01996 8.28892 8.52426 8.59188 9.83156 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.022186 B = 0.004903 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.740833 B = 5709.576872 C = 6287.831253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.438 4.438 8 H 0.088 0.912 9 C 0.139 3.861 10 C -0.234 4.234 11 C -0.028 4.028 12 C -0.274 4.274 13 C 0.020 3.980 14 C 0.099 3.901 15 N -0.465 5.465 16 C 0.072 3.928 17 C -0.127 4.127 18 C -0.145 4.145 19 C 0.506 3.494 20 F -0.188 7.188 21 F -0.167 7.167 22 F -0.155 7.155 23 C 0.147 3.853 24 F -0.155 7.155 25 C -0.209 4.209 26 H 0.289 0.711 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.165 0.835 30 H 0.159 0.841 31 H 0.143 0.857 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.016 -7.772 1.286 8.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.149 4.149 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.465 4.465 8 H 0.106 0.894 9 C 0.135 3.865 10 C -0.254 4.254 11 C -0.046 4.046 12 C -0.277 4.277 13 C 0.018 3.982 14 C -0.059 4.059 15 N -0.172 5.172 16 C -0.084 4.084 17 C -0.147 4.147 18 C -0.154 4.154 19 C 0.452 3.548 20 F -0.170 7.170 21 F -0.148 7.148 22 F -0.136 7.136 23 C 0.128 3.872 24 F -0.134 7.134 25 C -0.229 4.229 26 H 0.100 0.900 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.183 0.817 30 H 0.177 0.823 31 H 0.160 0.840 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.862 -8.190 1.788 8.858 hybrid contribution -0.631 1.569 -0.648 1.811 sum -3.493 -6.621 1.140 7.572 Atomic orbital electron populations 1.69809 1.07908 1.30323 1.30891 1.26117 0.94828 1.02059 0.91942 0.86187 0.80800 0.79851 0.79443 1.19159 1.19673 1.17991 1.19757 0.98478 0.91056 1.37182 0.89351 1.17470 0.89580 0.92459 0.86951 1.20680 1.04603 0.92463 1.07606 1.20040 0.92693 0.97244 0.94666 1.17700 1.05530 0.88524 1.15918 1.19598 0.91050 0.95118 0.92435 1.23144 1.00348 0.88458 0.93998 1.67569 1.10108 1.19801 1.19763 1.22629 0.90488 0.99258 0.96050 1.21890 1.01480 0.93163 0.98131 1.20700 0.96634 0.95942 1.02106 1.18161 0.76432 0.81257 0.78964 1.93112 1.41492 1.88020 1.94378 1.93238 1.79271 1.95344 1.46988 1.93387 1.95837 1.45966 1.78386 1.17249 0.84342 0.93808 0.91842 1.91392 1.52976 1.97466 1.71567 1.20905 1.01583 0.95996 1.04386 0.90013 0.87895 0.88265 0.81737 0.82343 0.83970 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.63 10.98 55.55 0.61 -18.02 16 2 C 0.07 1.67 5.13 -17.33 -0.09 1.58 16 3 Si 0.91 17.05 29.60 -169.99 -5.03 12.02 16 4 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 6 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 7 C -0.44 -10.55 9.03 -37.86 -0.34 -10.89 16 8 H 0.09 2.00 7.91 -52.48 -0.42 1.58 16 9 C 0.14 3.42 5.57 -106.81 -0.59 2.83 16 10 C -0.23 -5.21 9.73 -39.27 -0.38 -5.59 16 11 C -0.03 -0.58 9.67 -39.67 -0.38 -0.96 16 12 C -0.27 -5.83 4.24 -104.57 -0.44 -6.27 16 13 C 0.02 0.38 4.99 -104.74 -0.52 -0.14 16 14 C 0.10 1.64 10.92 -17.11 -0.19 1.45 16 15 N -0.46 -7.22 10.35 -12.89 -0.13 -7.35 16 16 C 0.07 0.96 11.17 -17.46 -0.20 0.76 16 17 C -0.13 -1.80 9.49 -39.50 -0.37 -2.18 16 18 C -0.14 -2.56 5.36 -103.91 -0.56 -3.11 16 19 C 0.51 9.57 2.90 36.01 0.10 9.68 16 20 F -0.19 -3.13 16.08 2.25 0.04 -3.09 16 21 F -0.17 -3.41 16.61 2.25 0.04 -3.38 16 22 F -0.15 -3.31 12.11 2.25 0.03 -3.28 16 23 C 0.15 3.47 5.83 -39.50 -0.23 3.24 16 24 F -0.16 -3.63 13.47 2.25 0.03 -3.60 16 25 C -0.21 -5.23 8.60 -39.22 -0.34 -5.57 16 26 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 27 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 28 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.17 2.45 8.06 -52.49 -0.42 2.02 16 30 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.14 1.63 7.26 -52.49 -0.38 1.25 16 32 H 0.13 3.40 6.18 -52.49 -0.32 3.07 16 LS Contribution 295.00 15.07 4.45 4.45 Total: -1.00 -26.37 295.00 -6.46 -32.82 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -1.95 Total: 4.61 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -4.53 Total: -15.19 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.48 Total: -25.37 kcal Atomic # 9 Polarization: -13.47 SS G_CDS: 0.13 Total: -13.34 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.37 -6.46 -32.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242279587.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.171 kcal (2) G-P(sol) polarization free energy of solvation -26.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds