Wall clock time and date at job start Tue Mar 31 2020 09:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86794 * 120.00033 * 2 1 4 4 H 1.48503 * 109.47295 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47200 * 299.99922 * 3 2 1 6 6 H 1.48493 * 109.47510 * 60.00006 * 3 2 1 7 7 C 1.39918 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00265 * 193.75405 * 7 2 1 9 9 C 1.41328 * 120.00031 * 13.75379 * 7 2 1 10 10 C 1.40533 * 120.20365 * 27.96108 * 9 7 2 11 11 C 1.38674 * 119.65586 * 179.72101 * 10 9 7 12 12 C 1.48391 * 119.96572 * 180.25319 * 11 10 9 13 13 C 1.39345 * 120.53788 * 58.22722 * 12 11 10 14 14 N 1.31718 * 120.59897 * 179.69991 * 13 12 11 15 15 C 1.31922 * 121.84893 * 0.58887 * 14 13 12 16 16 C 1.38274 * 121.02844 * 359.69876 * 15 14 13 17 17 C 1.38451 * 119.28647 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.84557 * 180.02562 * 17 16 15 19 19 F 1.39898 * 109.47085 * 353.35829 * 18 17 16 20 20 F 1.39903 * 109.47358 * 113.36024 * 18 17 16 21 21 F 1.39906 * 109.47295 * 233.35746 * 18 17 16 22 22 C 1.39815 * 120.06682 * 0.27782 * 11 10 9 23 23 C 1.38233 * 120.42468 * 0.02562 * 22 11 10 24 24 C 1.38065 * 120.34954 * 359.97438 * 23 22 11 25 25 F 1.35096 * 120.04369 * 180.02562 * 24 23 22 26 26 H 0.97000 * 120.00505 * 0.02562 * 1 2 3 27 27 H 1.08007 * 120.17474 * 359.97438 * 10 9 7 28 28 H 1.08000 * 119.70053 * 359.97438 * 13 12 11 29 29 H 1.07995 * 119.48610 * 179.72756 * 15 14 13 30 30 H 1.08002 * 120.35561 * 180.02562 * 16 15 14 31 31 H 1.08002 * 119.78731 * 179.97438 * 22 11 10 32 32 H 1.07997 * 119.82248 * 180.02562 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3464 0.0006 5 1 1.8838 2.3964 -1.2125 6 1 1.8838 2.3964 1.2124 7 6 2.0081 -1.2117 -0.0005 8 1 3.0649 -1.2252 0.2218 9 6 1.3319 -2.4180 -0.2921 10 6 0.1951 -2.4094 -1.1183 11 6 -0.4562 -3.6004 -1.4016 12 6 -1.6538 -3.6000 -2.2778 13 6 -1.5794 -3.1056 -3.5785 14 7 -2.6402 -3.1101 -4.3592 15 6 -3.8070 -3.5661 -3.9456 16 6 -3.9635 -4.0678 -2.6667 17 6 -2.8760 -4.0896 -1.8100 18 6 -3.0068 -4.6292 -0.4089 19 9 -4.3505 -4.9130 -0.1421 20 9 -2.2499 -5.7994 -0.2873 21 9 -2.5414 -3.6759 0.5033 22 6 0.0141 -4.8015 -0.8622 23 6 1.1282 -4.8127 -0.0440 24 6 1.7900 -3.6371 0.2495 25 9 2.8786 -3.6552 1.0494 26 1 -0.4851 0.8400 -0.0004 27 1 -0.1670 -1.4805 -1.5338 28 1 -0.6423 -2.7193 -3.9513 29 1 -4.6531 -3.5476 -4.6166 30 1 -4.9236 -4.4388 -2.3395 31 1 -0.4969 -5.7264 -1.0855 32 1 1.4833 -5.7461 0.3671 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242279640.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:18 Heat of formation + Delta-G solvation = -141.765006 kcal Electronic energy + Delta-G solvation = -25739.438211 eV Core-core repulsion = 21357.155394 eV Total energy + Delta-G solvation = -4382.282816 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.85930 -47.44930 -47.35595 -47.19292 -40.14651 -37.45417 -34.11743 -33.17765 -31.89119 -29.93910 -28.44049 -26.29888 -25.53749 -23.52642 -22.43650 -21.40816 -20.31924 -18.45970 -18.24845 -18.12243 -17.44392 -16.23051 -16.03787 -15.69021 -15.16462 -15.12912 -14.71786 -14.30430 -14.12432 -14.07916 -13.87150 -13.82289 -13.69048 -13.41162 -13.38478 -12.93764 -12.74263 -12.14019 -11.98988 -11.95387 -11.66264 -11.38681 -11.20140 -10.99811 -10.55823 -10.17845 -10.03307 -9.69218 -9.53468 -9.40043 -8.94595 -7.73216 -7.40329 -6.91963 -4.56206 0.92449 1.08671 2.42108 2.61257 2.88520 3.00806 3.03112 3.06931 3.73234 3.82712 3.92677 4.26081 4.35257 4.47789 4.71443 4.92175 4.96338 5.09711 5.28222 5.51546 5.75143 5.77435 5.79905 6.01247 6.10712 6.33180 6.63251 6.72591 6.88031 7.02926 7.25181 7.39432 7.62097 7.75987 7.87195 7.95854 8.33118 8.58910 8.64447 10.01502 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.014424 B = 0.005739 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.800144 B = 4877.445936 C = 5683.374704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.451 4.451 8 H 0.085 0.915 9 C 0.083 3.917 10 C -0.102 4.102 11 C -0.081 4.081 12 C -0.002 4.002 13 C 0.109 3.891 14 N -0.462 5.462 15 C 0.079 3.921 16 C -0.128 4.128 17 C -0.140 4.140 18 C 0.512 3.488 19 F -0.185 7.185 20 F -0.168 7.168 21 F -0.156 7.156 22 C -0.199 4.199 23 C -0.121 4.121 24 C -0.013 4.013 25 F -0.160 7.160 26 H 0.284 0.716 27 H 0.130 0.870 28 H 0.169 0.831 29 H 0.162 0.838 30 H 0.145 0.855 31 H 0.113 0.887 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.541 -4.864 -4.701 10.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.480 4.480 8 H 0.103 0.897 9 C 0.080 3.920 10 C -0.122 4.122 11 C -0.083 4.083 12 C -0.004 4.004 13 C -0.049 4.049 14 N -0.170 5.170 15 C -0.077 4.077 16 C -0.148 4.148 17 C -0.150 4.150 18 C 0.458 3.542 19 F -0.167 7.167 20 F -0.149 7.149 21 F -0.137 7.137 22 C -0.219 4.219 23 C -0.140 4.140 24 C -0.034 4.034 25 F -0.139 7.139 26 H 0.095 0.905 27 H 0.148 0.852 28 H 0.186 0.814 29 H 0.179 0.821 30 H 0.163 0.837 31 H 0.131 0.869 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.646 -4.382 -5.471 10.373 hybrid contribution 0.281 0.315 1.404 1.466 sum -7.365 -4.067 -4.067 9.344 Atomic orbital electron populations 1.69784 1.07513 1.29630 1.34639 1.25913 0.94849 1.01523 0.92103 0.86151 0.80969 0.80370 0.78734 1.18203 1.19511 1.19780 1.19539 0.97170 0.90294 1.41030 0.89696 1.17520 0.92481 0.91284 0.90722 1.21186 0.96616 0.95533 0.98862 1.18306 0.94749 0.95090 1.00108 1.19860 0.92621 0.92924 0.95000 1.23078 0.97387 0.95554 0.88908 1.67629 0.99440 1.13047 1.36886 1.22688 0.95546 0.95838 0.93635 1.21903 0.98671 0.99395 0.94807 1.20532 0.96110 1.04808 0.93517 1.18050 0.73146 0.76332 0.86712 1.93130 1.34721 1.93886 1.94957 1.93178 1.75453 1.49775 1.96521 1.93326 1.88246 1.63440 1.68727 1.20544 1.00044 0.96217 1.05055 1.20407 0.97100 0.95814 1.00697 1.18009 0.90172 0.95210 0.99984 1.91287 1.52984 1.97396 1.72267 0.90519 0.85186 0.81422 0.82122 0.83736 0.86936 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.48 10.95 55.55 0.61 -18.88 16 2 C 0.07 1.79 5.20 -17.34 -0.09 1.70 16 3 Si 0.91 18.11 29.58 -169.99 -5.03 13.08 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.45 -11.60 8.75 -37.78 -0.33 -11.93 16 8 H 0.08 2.17 7.77 -52.48 -0.41 1.76 16 9 C 0.08 2.12 5.55 -106.80 -0.59 1.53 16 10 C -0.10 -2.43 8.25 -38.56 -0.32 -2.75 16 11 C -0.08 -1.72 4.09 -104.97 -0.43 -2.15 16 12 C 0.00 -0.03 5.36 -104.75 -0.56 -0.59 16 13 C 0.11 1.80 10.82 -17.19 -0.19 1.62 16 14 N -0.46 -7.08 10.35 -12.97 -0.13 -7.21 16 15 C 0.08 1.01 11.17 -17.50 -0.20 0.81 16 16 C -0.13 -1.69 9.49 -39.49 -0.37 -2.07 16 17 C -0.14 -2.32 5.43 -103.99 -0.56 -2.89 16 18 C 0.51 8.76 2.81 36.01 0.10 8.86 16 19 F -0.19 -2.79 16.10 2.25 0.04 -2.75 16 20 F -0.17 -2.90 13.56 2.25 0.03 -2.87 16 21 F -0.16 -3.17 16.12 2.25 0.04 -3.13 16 22 C -0.20 -4.14 7.88 -38.99 -0.31 -4.45 16 23 C -0.12 -2.65 9.99 -39.65 -0.40 -3.05 16 24 C -0.01 -0.33 7.31 -38.58 -0.28 -0.61 16 25 F -0.16 -3.94 16.74 2.25 0.04 -3.90 16 26 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 27 H 0.13 3.17 6.27 -52.48 -0.33 2.84 16 28 H 0.17 2.59 8.06 -52.49 -0.42 2.17 16 29 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.14 1.50 7.29 -52.49 -0.38 1.11 16 31 H 0.11 2.14 5.89 -52.49 -0.31 1.83 16 32 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 296.49 15.07 4.47 4.47 Total: -1.00 -26.95 296.49 -6.30 -33.25 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -1.83 Total: 3.91 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -4.53 Total: -15.96 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.47 Total: -26.09 kcal Atomic # 9 Polarization: -12.80 SS G_CDS: 0.14 Total: -12.66 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.95 -6.30 -33.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242279640.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.511 kcal (2) G-P(sol) polarization free energy of solvation -26.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds