Wall clock time and date at job start Tue Mar 31 2020 09:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30847 * 1 3 3 Si 1.86804 * 119.99765 * 2 1 4 4 H 1.48503 * 109.46843 * 269.99922 * 3 2 1 5 5 H 1.48493 * 109.46924 * 29.99604 * 3 2 1 6 6 H 1.48496 * 109.46937 * 149.99940 * 3 2 1 7 7 C 1.39926 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00351 * 197.80257 * 7 2 1 9 9 C 1.41320 * 119.99997 * 17.80288 * 7 2 1 10 10 C 1.40783 * 120.20884 * 24.62808 * 9 7 2 11 11 C 1.37614 * 120.01860 * 180.02562 * 10 9 7 12 12 C 1.38503 * 120.45582 * 359.97308 * 11 10 9 13 13 C 1.39542 * 120.42191 * 0.03126 * 12 11 10 14 14 C 1.48397 * 120.02011 * 179.97438 * 13 12 11 15 15 C 1.39342 * 120.53498 * 64.99637 * 14 13 12 16 16 N 1.31722 * 120.59356 * 180.24074 * 15 14 13 17 17 C 1.31924 * 121.84986 * 359.46701 * 16 15 14 18 18 C 1.38271 * 121.02899 * 0.53727 * 17 16 15 19 19 C 1.38454 * 119.28397 * 359.73536 * 18 17 16 20 20 C 1.50703 * 120.84164 * 180.02562 * 19 18 17 21 21 F 1.39899 * 109.47240 * 359.97438 * 20 19 18 22 22 F 1.39905 * 109.47042 * 119.98043 * 20 19 18 23 23 F 1.39901 * 109.47606 * 239.98144 * 20 19 18 24 24 C 1.39101 * 119.96961 * 0.22463 * 13 12 11 25 25 F 1.35104 * 120.22775 * 179.72671 * 24 13 12 26 26 H 0.96998 * 120.00163 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.98507 * 0.02589 * 10 9 7 28 28 H 1.08003 * 119.77085 * 179.97438 * 11 10 9 29 29 H 1.08003 * 119.78745 * 179.97438 * 12 11 10 30 30 H 1.07997 * 119.70511 * 359.95689 * 15 14 13 31 31 H 1.07997 * 119.48554 * 180.27197 * 17 16 15 32 32 H 1.07994 * 120.35680 * 179.76370 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4398 2.6527 0.6999 6 1 3.5399 1.4403 0.7000 7 6 2.0082 -1.2118 0.0005 8 1 3.0494 -1.2340 0.2865 9 6 1.3524 -2.4065 -0.3731 10 6 0.2230 -2.3620 -1.2125 11 6 -0.4129 -3.5278 -1.5735 12 6 0.0504 -4.7506 -1.1169 13 6 1.1681 -4.8165 -0.2841 14 6 1.6566 -6.1313 0.2004 15 6 2.1618 -7.0724 -0.6945 16 7 2.5912 -8.2417 -0.2663 17 6 2.5718 -8.5647 1.0126 18 6 2.0855 -7.6854 1.9625 19 6 1.6177 -6.4457 1.5612 20 6 1.0806 -5.4600 2.5668 21 9 1.1523 -6.0158 3.8487 22 9 1.8426 -4.2875 2.5234 23 9 -0.2518 -5.1618 2.2619 24 6 1.8212 -3.6486 0.0961 25 9 2.9005 -3.7059 0.9068 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1443 -1.4126 -1.5732 28 1 -1.2792 -3.4890 -2.2173 29 1 -0.4571 -5.6588 -1.4066 30 1 2.1973 -6.8428 -1.7492 31 1 2.9376 -9.5326 1.3220 32 1 2.0712 -7.9626 3.0062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242280106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:22 Heat of formation + Delta-G solvation = -138.896447 kcal Electronic energy + Delta-G solvation = -26208.969670 eV Core-core repulsion = 21826.811244 eV Total energy + Delta-G solvation = -4382.158426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.70718 -47.51344 -47.21366 -46.92139 -40.13531 -37.40272 -34.25792 -33.16695 -31.87485 -29.78726 -28.50311 -26.33700 -25.43570 -23.67655 -22.35627 -21.00114 -20.62633 -18.41642 -18.13337 -17.97511 -17.45334 -16.19151 -16.05168 -15.48132 -15.36334 -15.16139 -14.71721 -14.59959 -14.21546 -13.92281 -13.82644 -13.68364 -13.47227 -13.23379 -13.11867 -12.96586 -12.67596 -12.09682 -11.99238 -11.77503 -11.65200 -11.37360 -11.17667 -10.82036 -10.57616 -10.11706 -10.02889 -9.83906 -9.51650 -9.36214 -8.98343 -7.67635 -7.46036 -6.93938 -4.53349 0.91313 1.05655 2.46377 2.55534 2.97758 3.00342 3.05048 3.06399 3.69285 3.82851 4.02851 4.33465 4.37019 4.42682 4.84568 4.85944 4.96619 5.09551 5.32670 5.45913 5.64745 5.73708 5.80716 6.02848 6.16573 6.39692 6.56679 6.72945 6.90231 7.02651 7.26492 7.40259 7.72975 7.81778 7.88238 7.93046 8.37984 8.59970 8.67040 9.99896 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.019528 B = 0.005402 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.519741 B = 5181.598464 C = 5605.704768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.449 4.449 8 H 0.084 0.916 9 C 0.085 3.915 10 C -0.134 4.134 11 C -0.111 4.111 12 C -0.189 4.189 13 C -0.094 4.094 14 C -0.009 4.009 15 C 0.110 3.890 16 N -0.465 5.465 17 C 0.083 3.917 18 C -0.129 4.129 19 C -0.131 4.131 20 C 0.502 3.498 21 F -0.187 7.187 22 F -0.146 7.146 23 F -0.168 7.168 24 C 0.005 3.995 25 F -0.149 7.149 26 H 0.285 0.715 27 H 0.128 0.872 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.168 0.832 31 H 0.163 0.837 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.054 -9.201 1.756 9.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.478 4.478 8 H 0.102 0.898 9 C 0.082 3.918 10 C -0.154 4.154 11 C -0.130 4.130 12 C -0.209 4.209 13 C -0.096 4.096 14 C -0.012 4.012 15 C -0.048 4.048 16 N -0.172 5.172 17 C -0.074 4.074 18 C -0.149 4.149 19 C -0.140 4.140 20 C 0.448 3.552 21 F -0.169 7.169 22 F -0.127 7.127 23 F -0.149 7.149 24 C -0.015 4.015 25 F -0.128 7.128 26 H 0.096 0.904 27 H 0.146 0.854 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.185 0.815 31 H 0.180 0.820 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.200 -9.617 1.244 9.771 hybrid contribution -0.010 1.506 1.068 1.846 sum 1.191 -8.111 2.312 8.518 Atomic orbital electron populations 1.69802 1.07647 1.29773 1.33825 1.25919 0.94781 1.01565 0.91997 0.86206 0.80581 0.79958 0.79507 1.19020 1.20096 1.18382 1.19526 0.98487 0.90806 1.38939 0.89761 1.17536 0.92713 0.90559 0.91019 1.21306 0.97750 0.97506 0.98831 1.20636 0.99255 0.92651 1.00411 1.20126 0.98752 0.97040 1.04938 1.18102 0.99371 0.88285 1.03856 1.19755 0.94330 0.95613 0.91461 1.23027 0.93712 0.87665 1.00383 1.67634 1.13493 1.18640 1.17449 1.22708 0.97159 0.99531 0.87957 1.21929 0.97920 0.92761 1.02255 1.20609 1.03750 0.95562 0.94082 1.18188 0.76657 0.81242 0.79116 1.93118 1.96240 1.85537 1.41982 1.93451 1.74667 1.48681 1.95905 1.93242 1.35082 1.93760 1.92820 1.17744 0.90786 0.93419 0.99579 1.91330 1.53466 1.97143 1.70883 0.90437 0.85419 0.88206 0.88231 0.81457 0.82005 0.83599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.39 10.96 55.55 0.61 -18.78 16 2 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.17 29.60 -169.99 -5.03 13.14 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.45 -11.69 8.78 -37.78 -0.33 -12.02 16 8 H 0.08 2.19 7.74 -52.49 -0.41 1.78 16 9 C 0.08 2.19 5.58 -106.79 -0.60 1.60 16 10 C -0.13 -3.25 8.69 -38.85 -0.34 -3.59 16 11 C -0.11 -2.37 10.01 -39.71 -0.40 -2.77 16 12 C -0.19 -3.88 9.74 -39.00 -0.38 -4.26 16 13 C -0.09 -2.03 4.22 -104.91 -0.44 -2.47 16 14 C -0.01 -0.17 5.00 -104.75 -0.52 -0.70 16 15 C 0.11 1.78 10.91 -17.19 -0.19 1.59 16 16 N -0.46 -6.99 10.35 -12.97 -0.13 -7.12 16 17 C 0.08 1.06 11.17 -17.50 -0.20 0.86 16 18 C -0.13 -1.78 9.49 -39.49 -0.37 -2.15 16 19 C -0.13 -2.29 5.35 -103.99 -0.56 -2.85 16 20 C 0.50 9.54 2.90 36.01 0.10 9.65 16 21 F -0.19 -3.10 16.08 2.25 0.04 -3.06 16 22 F -0.15 -3.22 12.09 2.25 0.03 -3.19 16 23 F -0.17 -3.42 16.62 2.25 0.04 -3.39 16 24 C 0.01 0.13 5.89 -38.29 -0.23 -0.10 16 25 F -0.15 -3.68 12.93 2.25 0.03 -3.65 16 26 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 27 H 0.13 3.15 6.16 -52.48 -0.32 2.83 16 28 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 29 H 0.10 1.80 8.06 -52.48 -0.42 1.37 16 30 H 0.17 2.42 8.06 -52.49 -0.42 2.00 16 31 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.15 1.61 7.26 -52.49 -0.38 1.23 16 LS Contribution 294.47 15.07 4.44 4.44 Total: -1.00 -27.45 294.47 -6.46 -33.91 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -1.94 Total: 3.14 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -4.53 Total: -15.44 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.47 Total: -25.90 kcal Atomic # 9 Polarization: -13.41 SS G_CDS: 0.13 Total: -13.28 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.45 -6.46 -33.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242280106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.986 kcal (2) G-P(sol) polarization free energy of solvation -27.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds