Wall clock time and date at job start Tue Mar 31 2020 09:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30696 * 1 3 3 Si 1.86803 * 119.99684 * 2 1 4 4 H 1.48502 * 109.47246 * 239.99749 * 3 2 1 5 5 H 1.48494 * 109.47471 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46723 * 120.00409 * 3 2 1 7 7 C 1.40145 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99894 * 180.02562 * 7 2 1 9 9 C 1.40788 * 119.99837 * 0.02562 * 7 2 1 10 10 N 1.33700 * 119.94302 * 0.24457 * 9 7 2 11 11 C 1.31286 * 121.63625 * 180.29322 * 10 9 7 12 12 C 1.39066 * 121.34254 * 359.72069 * 11 10 9 13 13 C 1.38369 * 119.73461 * 0.02562 * 12 11 10 14 14 C 1.39712 * 118.47063 * 359.97438 * 13 12 11 15 15 C 1.47759 * 120.64748 * 179.97438 * 14 13 12 16 16 C 1.39958 * 120.17158 * 90.00293 * 15 14 13 17 17 F 1.35108 * 120.10336 * 359.97438 * 16 15 14 18 18 C 1.38167 * 119.78764 * 179.97438 * 16 15 14 19 19 C 1.38348 * 120.12390 * 359.97438 * 18 16 15 20 20 C 1.38430 * 120.34149 * 0.27564 * 19 18 16 21 21 C 1.37905 * 120.21728 * 359.44533 * 20 19 18 22 22 C 1.50697 * 120.06893 * 180.25463 * 21 20 19 23 23 F 1.39904 * 109.46886 * 0.29761 * 22 21 20 24 24 F 1.39896 * 109.46995 * 120.29494 * 22 21 20 25 25 F 1.39901 * 109.47084 * 240.30207 * 22 21 20 26 26 H 0.96997 * 120.00179 * 359.97438 * 1 2 3 27 27 H 1.07995 * 119.32490 * 179.75321 * 11 10 9 28 28 H 1.08009 * 120.13132 * 180.02562 * 12 11 10 29 29 H 1.08004 * 120.76016 * 180.02562 * 13 12 11 30 30 H 1.07994 * 119.93651 * 179.97438 * 18 16 15 31 31 H 1.08002 * 119.82501 * 179.97438 * 19 18 16 32 32 H 1.08003 * 119.88959 * 179.71894 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.0947 1.6965 -1.2125 5 1 1.2759 2.7465 0.0006 6 1 3.0947 1.6964 1.2125 7 6 2.0077 -1.2137 -0.0005 8 1 3.0877 -1.2137 -0.0001 9 6 1.3037 -2.4329 -0.0016 10 7 -0.0333 -2.4316 -0.0071 11 6 -0.7231 -3.5486 -0.0026 12 6 -0.0925 -4.7881 0.0024 13 6 1.2895 -4.8550 0.0031 14 6 2.0142 -3.6606 -0.0018 15 6 3.4917 -3.6759 -0.0007 16 6 4.1959 -3.6886 -1.2101 17 9 3.5268 -3.6874 -2.3839 18 6 5.5775 -3.7024 -1.1999 19 6 6.2629 -3.7031 0.0019 20 6 5.5716 -3.6958 1.2012 21 6 4.1927 -3.6762 1.2074 22 6 3.4437 -3.6625 2.5149 23 9 4.3564 -3.6662 3.5753 24 9 2.6508 -2.5121 2.5861 25 9 2.6286 -4.7966 2.5974 26 1 -0.4850 0.8400 0.0004 27 1 -1.8021 -3.5039 -0.0032 28 1 -0.6793 -5.6949 0.0056 29 1 1.7964 -5.8088 0.0065 30 1 6.1233 -3.7126 -2.1317 31 1 7.3429 -3.7144 0.0043 32 1 6.1141 -3.7011 2.1351 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242303457.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:49 Heat of formation + Delta-G solvation = -133.249179 kcal Electronic energy + Delta-G solvation = -26521.282195 eV Core-core repulsion = 22139.368653 eV Total energy + Delta-G solvation = -4381.913542 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.52605 -48.33409 -47.12387 -46.83218 -39.06475 -37.76748 -33.73062 -32.57172 -31.09243 -30.33376 -28.74009 -25.95154 -25.45154 -23.06219 -21.70900 -21.49217 -20.50595 -18.12636 -17.89750 -17.76758 -17.53647 -16.09338 -15.87799 -15.69072 -15.60883 -15.03824 -14.51679 -14.23328 -13.99377 -13.84746 -13.78553 -13.39693 -13.11353 -13.04563 -13.00294 -12.72247 -12.27864 -12.19042 -12.04870 -11.99079 -11.67089 -11.27100 -11.19205 -11.09904 -10.76328 -10.46133 -10.07007 -9.44826 -8.92543 -8.37772 -8.26844 -7.66052 -7.60852 -6.50931 -4.63970 1.14010 1.41856 2.59315 2.89253 3.03218 3.05759 3.19114 3.21495 3.63176 3.87908 4.23797 4.48509 4.66602 4.71096 5.04070 5.07877 5.19940 5.28859 5.46390 5.79965 5.84222 6.03359 6.10905 6.24125 6.35539 6.39166 6.47502 6.51736 6.77888 6.98057 7.05388 7.22999 7.44937 7.62006 7.92902 8.12168 8.53585 8.82079 10.00174 10.19444 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.007919 C = 0.007274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.956646 B = 3534.756155 C = 3848.347366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.705 5.705 2 C 0.071 3.929 3 Si 0.902 3.098 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.409 4.409 8 H 0.080 0.920 9 C 0.287 3.713 10 N -0.479 5.479 11 C 0.140 3.860 12 C -0.322 4.322 13 C -0.011 4.011 14 C -0.278 4.278 15 C 0.054 3.946 16 C 0.099 3.901 17 F -0.127 7.127 18 C -0.130 4.130 19 C -0.115 4.115 20 C -0.091 4.091 21 C -0.157 4.157 22 C 0.511 3.489 23 F -0.191 7.191 24 F -0.153 7.153 25 F -0.175 7.175 26 H 0.276 0.724 27 H 0.120 0.880 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.472 -4.541 1.371 10.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.156 4.156 3 Si 0.726 3.274 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.438 4.438 8 H 0.098 0.902 9 C 0.164 3.836 10 N -0.190 5.190 11 C -0.029 4.029 12 C -0.345 4.345 13 C -0.035 4.035 14 C -0.283 4.283 15 C 0.052 3.948 16 C 0.080 3.920 17 F -0.105 7.105 18 C -0.149 4.149 19 C -0.133 4.133 20 C -0.109 4.109 21 C -0.159 4.159 22 C 0.457 3.543 23 F -0.172 7.172 24 F -0.134 7.134 25 F -0.156 7.156 26 H 0.087 0.913 27 H 0.138 0.862 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.824 -3.527 1.355 9.598 hybrid contribution 0.547 -0.165 -0.011 0.572 sum 9.371 -3.692 1.343 10.161 Atomic orbital electron populations 1.70084 1.07231 1.28252 1.26892 1.26092 0.94908 1.01180 0.93454 0.86447 0.80356 0.80398 0.80215 1.18704 1.19928 1.18573 1.19461 0.94108 0.89429 1.40830 0.90180 1.18344 0.87840 0.90157 0.87273 1.68774 1.06818 1.26467 1.16978 1.22638 0.98879 0.88834 0.92592 1.21163 0.94333 0.97949 1.21030 1.20728 0.93829 0.95122 0.93836 1.19067 0.88876 0.95446 1.24875 1.18465 0.94461 0.92248 0.89591 1.17825 0.89439 1.03375 0.81400 1.91512 1.80880 1.93606 1.44511 1.21209 0.92244 1.01645 0.99815 1.20822 0.99911 1.01731 0.90857 1.20898 0.92169 0.98463 0.99394 1.20077 0.94137 1.09631 0.92031 1.18081 0.77540 0.74878 0.83791 1.93099 1.67359 1.96445 1.60343 1.93352 1.74570 1.49029 1.96439 1.93200 1.74111 1.51712 1.96596 0.91257 0.86217 0.88473 0.88711 0.84601 0.84696 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.47 11.46 55.56 0.64 -17.83 16 2 C 0.07 1.78 5.50 -17.32 -0.10 1.69 16 3 Si 0.90 18.60 29.56 -169.99 -5.03 13.57 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.41 -10.73 7.99 -37.90 -0.30 -11.04 16 8 H 0.08 2.03 6.85 -52.48 -0.36 1.67 16 9 C 0.29 7.64 5.77 -84.71 -0.49 7.15 16 10 N -0.48 -13.07 7.85 -10.91 -0.09 -13.16 16 11 C 0.14 3.37 11.17 -17.48 -0.20 3.18 16 12 C -0.32 -7.20 10.10 -39.23 -0.40 -7.60 16 13 C -0.01 -0.24 8.95 -38.98 -0.35 -0.59 16 14 C -0.28 -6.61 3.38 -104.08 -0.35 -6.96 16 15 C 0.05 1.13 3.86 -104.82 -0.40 0.72 16 16 C 0.10 1.87 7.29 -38.96 -0.28 1.59 16 17 F -0.13 -2.60 16.83 2.25 0.04 -2.56 16 18 C -0.13 -1.88 10.01 -39.57 -0.40 -2.28 16 19 C -0.12 -1.47 10.04 -39.47 -0.40 -1.86 16 20 C -0.09 -1.33 9.42 -39.63 -0.37 -1.70 16 21 C -0.16 -2.92 5.40 -104.21 -0.56 -3.48 16 22 C 0.51 9.96 2.89 36.00 0.10 10.06 16 23 F -0.19 -3.23 15.97 2.25 0.04 -3.20 16 24 F -0.15 -3.47 15.03 2.25 0.03 -3.44 16 25 F -0.17 -3.52 15.73 2.25 0.04 -3.49 16 26 H 0.28 6.56 8.29 -40.82 -0.34 6.22 16 27 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 28 H 0.10 1.90 8.06 -52.48 -0.42 1.47 16 29 H 0.09 1.93 8.06 -52.48 -0.42 1.50 16 30 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 31 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.14 1.65 7.15 -52.48 -0.38 1.28 16 LS Contribution 298.09 15.07 4.49 4.49 Total: -1.00 -29.18 298.09 -6.31 -35.49 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -1.98 Total: 1.25 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -4.49 Total: -11.14 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.55 Total: -30.99 kcal Atomic # 9 Polarization: -12.83 SS G_CDS: 0.14 Total: -12.69 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.18 -6.31 -35.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242303457.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.759 kcal (2) G-P(sol) polarization free energy of solvation -29.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds