Wall clock time and date at job start Tue Mar 31 2020 09:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86803 * 119.99666 * 2 1 4 4 H 1.48504 * 109.47143 * 239.99879 * 3 2 1 5 5 H 1.48494 * 109.47188 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46986 * 120.00271 * 3 2 1 7 7 C 1.39918 * 120.00524 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00425 * 168.93477 * 7 2 1 9 9 C 1.41319 * 119.99536 * 348.93426 * 7 2 1 10 10 C 1.40533 * 120.21230 * 330.71228 * 9 7 2 11 11 C 1.38663 * 119.65911 * 179.97438 * 10 9 7 12 12 C 1.48405 * 119.96546 * 179.97438 * 11 10 9 13 13 C 1.39766 * 120.53480 * 303.50310 * 12 11 10 14 14 C 1.38412 * 118.31202 * 179.72447 * 13 12 11 15 15 C 1.38317 * 119.28042 * 0.25896 * 14 13 12 16 16 N 1.31881 * 121.03004 * 0.02562 * 15 14 13 17 17 C 1.31747 * 121.85233 * 359.97438 * 16 15 14 18 18 C 1.50706 * 119.70010 * 180.02562 * 17 16 15 19 19 F 1.39901 * 109.47055 * 11.56843 * 18 17 16 20 20 F 1.39897 * 109.46868 * 131.56653 * 18 17 16 21 21 F 1.39898 * 109.47074 * 251.56390 * 18 17 16 22 22 C 1.39812 * 120.07252 * 0.24873 * 11 10 9 23 23 C 1.38234 * 120.41913 * 359.48808 * 22 11 10 24 24 C 1.38071 * 120.34930 * 0.51571 * 23 22 11 25 25 F 1.35095 * 120.04167 * 179.76481 * 24 23 22 26 26 H 0.96999 * 120.00459 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.17215 * 359.95085 * 10 9 7 28 28 H 1.08001 * 120.84387 * 0.02562 * 13 12 11 29 29 H 1.07996 * 120.36075 * 180.27422 * 14 13 12 30 30 H 1.08001 * 119.47948 * 179.97438 * 15 14 13 31 31 H 1.08005 * 119.79122 * 179.74701 * 22 11 10 32 32 H 1.08001 * 119.82631 * 180.23818 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0962 1.6965 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0962 1.6965 1.2125 7 6 2.0082 -1.2117 -0.0005 8 1 3.0731 -1.2203 -0.1800 9 6 1.3214 -2.4242 0.2338 10 6 0.1676 -2.4398 1.0361 11 6 -0.4977 -3.6360 1.2580 12 6 -1.7164 -3.6603 2.1045 13 6 -1.6790 -3.1814 3.4170 14 6 -2.8439 -3.2206 4.1636 15 6 -3.9956 -3.7328 3.5939 16 7 -3.9987 -4.1829 2.3543 17 6 -2.9147 -4.1659 1.6057 18 6 -2.9733 -4.6922 0.1947 19 9 -4.3082 -4.8903 -0.1740 20 9 -2.3822 -3.7675 -0.6728 21 9 -2.2839 -5.9073 0.1213 22 6 -0.0184 -4.8201 0.6899 23 6 1.1131 -4.8076 -0.1041 24 6 1.7892 -3.6264 -0.3366 25 9 2.8970 -3.6220 -1.1097 26 1 -0.4851 0.8400 0.0004 27 1 -0.1988 -1.5249 1.4778 28 1 -0.7656 -2.7862 3.8365 29 1 -2.8536 -2.8551 5.1797 30 1 -4.9062 -3.7653 4.1736 31 1 -0.5378 -5.7500 0.8691 32 1 1.4728 -5.7273 -0.5413 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242373717.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:48 Heat of formation + Delta-G solvation = -139.102721 kcal Electronic energy + Delta-G solvation = -25778.593174 eV Core-core repulsion = 21396.425803 eV Total energy + Delta-G solvation = -4382.167371 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.68755 -47.35650 -47.24463 -47.07579 -40.17783 -37.46056 -34.05582 -32.77335 -32.29434 -29.92114 -28.56556 -26.13157 -25.53663 -23.56273 -22.39488 -21.38244 -20.33840 -18.36691 -18.07853 -18.01360 -17.50049 -16.21879 -16.06976 -15.84625 -15.23557 -14.88308 -14.68450 -14.13702 -14.08794 -13.90535 -13.74934 -13.61606 -13.43592 -13.30002 -13.25096 -12.97332 -12.72932 -12.48487 -11.97009 -11.85716 -11.65806 -11.38978 -11.20057 -10.81217 -10.59853 -10.26970 -9.88312 -9.68788 -9.53453 -9.42555 -9.04741 -7.71529 -7.38831 -6.89595 -4.56998 0.84551 1.23919 2.43592 2.62375 2.92103 2.99090 3.02147 3.05373 3.64724 3.82263 3.91697 4.32420 4.36447 4.77478 4.84315 4.91565 5.03897 5.16624 5.26353 5.38347 5.64945 5.78636 5.97588 6.09562 6.21298 6.33853 6.56792 6.72709 6.88670 7.03707 7.25602 7.39801 7.62181 7.76149 7.77625 7.88966 8.32740 8.59452 8.64689 10.03462 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.014685 B = 0.005737 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.261519 B = 4879.790453 C = 5706.444757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.074 3.926 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.453 4.453 8 H 0.083 0.917 9 C 0.083 3.917 10 C -0.101 4.101 11 C -0.080 4.080 12 C 0.000 4.000 13 C -0.072 4.072 14 C -0.141 4.141 15 C 0.081 3.919 16 N -0.446 5.446 17 C 0.032 3.968 18 C 0.525 3.475 19 F -0.174 7.174 20 F -0.154 7.154 21 F -0.170 7.170 22 C -0.202 4.202 23 C -0.120 4.120 24 C -0.012 4.012 25 F -0.160 7.160 26 H 0.284 0.716 27 H 0.131 0.869 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.163 0.837 31 H 0.115 0.885 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.797 -3.617 7.093 9.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.482 4.482 8 H 0.102 0.898 9 C 0.080 3.920 10 C -0.120 4.120 11 C -0.081 4.081 12 C -0.002 4.002 13 C -0.097 4.097 14 C -0.161 4.161 15 C -0.077 4.077 16 N -0.154 5.154 17 C -0.107 4.107 18 C 0.470 3.530 19 F -0.156 7.156 20 F -0.135 7.135 21 F -0.151 7.151 22 C -0.221 4.221 23 C -0.139 4.139 24 C -0.032 4.032 25 F -0.139 7.139 26 H 0.095 0.905 27 H 0.149 0.851 28 H 0.165 0.835 29 H 0.160 0.840 30 H 0.180 0.820 31 H 0.133 0.867 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.744 -3.788 6.642 10.195 hybrid contribution 1.188 1.046 -0.052 1.584 sum -5.555 -2.743 6.590 9.045 Atomic orbital electron populations 1.69760 1.07433 1.29726 1.35050 1.25903 0.94887 1.01438 0.92163 0.86229 0.79983 0.79640 0.80181 1.18778 1.20175 1.18703 1.19460 0.96391 0.90070 1.42305 0.89846 1.17513 0.92585 0.91322 0.90561 1.21199 0.96339 0.95375 0.99123 1.18331 0.94179 0.95244 1.00378 1.19724 0.93428 0.92894 0.94148 1.21812 0.99220 0.96361 0.92347 1.22264 0.93526 0.98911 1.01377 1.22643 0.98420 0.96186 0.90480 1.67076 1.28034 1.13886 1.06416 1.21058 0.91223 1.03951 0.94436 1.17740 0.73616 0.75910 0.85776 1.93174 1.34595 1.95059 1.92732 1.93330 1.83677 1.65384 1.71090 1.93138 1.79117 1.46168 1.96699 1.20634 0.99783 0.96622 1.05105 1.20409 0.96840 0.95813 1.00875 1.18028 0.89157 0.95505 1.00547 1.91288 1.51460 1.97407 1.73759 0.90459 0.85149 0.83497 0.84031 0.82030 0.86723 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.59 10.89 55.55 0.61 -18.99 16 2 C 0.07 1.78 5.24 -17.34 -0.09 1.69 16 3 Si 0.92 18.07 29.57 -169.99 -5.03 13.04 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.45 -11.64 8.75 -37.78 -0.33 -11.97 16 8 H 0.08 2.12 7.77 -52.49 -0.41 1.71 16 9 C 0.08 2.13 5.54 -106.80 -0.59 1.54 16 10 C -0.10 -2.40 8.22 -38.56 -0.32 -2.72 16 11 C -0.08 -1.71 3.90 -104.96 -0.41 -2.12 16 12 C 0.00 0.00 5.36 -104.75 -0.56 -0.56 16 13 C -0.07 -1.07 9.78 -38.95 -0.38 -1.45 16 14 C -0.14 -1.68 10.10 -39.49 -0.40 -2.07 16 15 C 0.08 1.04 11.17 -17.50 -0.20 0.84 16 16 N -0.45 -7.39 9.76 -9.21 -0.09 -7.48 16 17 C 0.03 0.59 6.29 -82.23 -0.52 0.07 16 18 C 0.52 9.97 2.79 36.01 0.10 10.07 16 19 F -0.17 -3.17 16.88 2.25 0.04 -3.13 16 20 F -0.15 -3.29 15.38 2.25 0.03 -3.26 16 21 F -0.17 -3.12 13.78 2.25 0.03 -3.09 16 22 C -0.20 -4.26 7.71 -38.99 -0.30 -4.56 16 23 C -0.12 -2.65 9.99 -39.64 -0.40 -3.05 16 24 C -0.01 -0.30 7.31 -38.58 -0.28 -0.58 16 25 F -0.16 -3.94 16.75 2.25 0.04 -3.90 16 26 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 27 H 0.13 3.17 6.27 -52.48 -0.33 2.84 16 28 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 29 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.11 2.23 5.67 -52.48 -0.30 1.93 16 32 H 0.11 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 296.75 15.07 4.47 4.47 Total: -1.00 -27.66 296.75 -6.43 -34.09 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -1.86 Total: 3.10 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -4.67 Total: -14.87 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.52 Total: -26.46 kcal Atomic # 9 Polarization: -13.52 SS G_CDS: 0.14 Total: -13.38 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.66 -6.43 -34.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242373717.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.010 kcal (2) G-P(sol) polarization free energy of solvation -27.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds