Wall clock time and date at job start Tue Mar 31 2020 09:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30797 * 1 3 3 Si 1.86796 * 120.00263 * 2 1 4 4 H 1.48503 * 109.47079 * 240.00132 * 3 2 1 5 5 H 1.48507 * 109.47011 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47183 * 120.00006 * 3 2 1 7 7 C 1.40055 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00000 * 197.04126 * 7 2 1 9 9 C 1.40824 * 119.99531 * 17.04739 * 7 2 1 10 10 C 1.40792 * 120.30367 * 25.33728 * 9 7 2 11 11 C 1.36355 * 120.01559 * 179.72619 * 10 9 7 12 12 C 1.39204 * 120.65032 * 0.22634 * 11 10 9 13 13 F 1.35105 * 119.69456 * 180.02562 * 12 11 10 14 14 C 1.38405 * 120.61402 * 0.02562 * 12 11 10 15 15 C 1.39042 * 119.95421 * 0.02562 * 14 12 11 16 16 C 1.47902 * 120.31632 * 180.02562 * 15 14 12 17 17 C 1.40057 * 120.55993 * 106.29368 * 16 15 14 18 18 C 1.38332 * 118.28004 * 179.76167 * 17 16 15 19 19 C 1.38373 * 119.31638 * 0.53263 * 18 17 16 20 20 N 1.31931 * 121.09201 * 359.70263 * 19 18 17 21 21 C 1.31688 * 121.87690 * 0.02562 * 20 19 18 22 22 C 1.50701 * 119.72435 * 179.97438 * 21 20 19 23 23 F 1.39907 * 109.47149 * 246.72856 * 22 21 20 24 24 F 1.39903 * 109.46727 * 6.72843 * 22 21 20 25 25 F 1.39894 * 109.47242 * 126.72602 * 22 21 20 26 26 H 0.96997 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.07994 * 119.98977 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.67035 * 180.25557 * 11 10 9 29 29 H 1.07991 * 120.02132 * 180.02562 * 14 12 11 30 30 H 1.07998 * 120.85853 * 359.97438 * 17 16 15 31 31 H 1.08009 * 120.33815 * 180.23732 * 18 17 16 32 32 H 1.08003 * 119.45614 * 179.72944 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0958 1.6963 -1.2125 5 1 1.2770 2.7465 -0.0006 6 1 3.0958 1.6963 1.2125 7 6 2.0082 -1.2129 0.0005 8 1 3.0526 -1.2333 0.2746 9 6 1.3504 -2.4058 -0.3565 10 6 0.2202 -2.3702 -1.1952 11 6 -0.4089 -3.5292 -1.5417 12 6 0.0520 -4.7552 -1.0701 13 9 -0.5858 -5.8918 -1.4261 14 6 1.1575 -4.8206 -0.2400 15 6 1.8176 -3.6542 0.1302 16 6 3.0002 -3.7148 1.0165 17 6 4.2861 -3.5032 0.5035 18 6 5.3581 -3.5659 1.3756 19 6 5.1292 -3.8440 2.7116 20 7 3.9070 -4.0440 3.1663 21 6 2.8540 -3.9897 2.3773 22 6 1.4796 -4.2267 2.9483 23 9 0.9554 -5.4135 2.4248 24 9 1.5645 -4.3287 4.3410 25 9 0.6431 -3.1579 2.6091 26 1 -0.4849 0.8400 0.0004 27 1 -0.1462 -1.4249 -1.5674 28 1 -1.2730 -3.4958 -2.1887 29 1 1.5071 -5.7769 0.1199 30 1 4.4366 -3.2930 -0.5451 31 1 6.3638 -3.4041 1.0164 32 1 5.9650 -3.8978 3.3936 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242374859.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:50 Heat of formation + Delta-G solvation = -143.402019 kcal Electronic energy + Delta-G solvation = -26197.532935 eV Core-core repulsion = 21815.179132 eV Total energy + Delta-G solvation = -4382.353803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.063 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.44252 -47.54391 -47.00693 -46.84640 -39.94851 -37.53062 -33.87786 -32.75680 -32.16977 -29.63208 -28.99726 -26.04344 -25.32355 -23.43106 -22.17797 -21.25973 -20.40067 -18.12734 -17.86085 -17.76792 -17.56434 -16.55822 -15.89246 -15.54219 -15.19474 -14.80886 -14.31440 -14.28639 -13.94495 -13.84731 -13.68948 -13.43567 -13.36235 -13.06365 -13.03097 -12.94128 -12.70862 -12.26908 -12.19620 -12.07336 -11.48916 -11.42383 -11.28839 -10.95358 -10.56263 -10.23068 -9.87147 -9.55350 -9.42616 -9.28061 -8.77587 -7.79316 -7.51158 -7.05960 -4.64280 1.11132 1.50360 2.42621 2.60538 2.91994 2.93152 3.00256 3.14822 3.71476 3.85271 4.12780 4.28934 4.55348 4.98297 5.07043 5.10094 5.16902 5.36667 5.38882 5.59621 5.74136 5.91094 5.96760 6.24753 6.32264 6.46839 6.72627 6.80683 6.82138 6.95838 7.18928 7.40091 7.63864 7.70334 7.92884 7.99847 8.25879 8.52314 8.60201 9.86714 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.010385 B = 0.008321 C = 0.006063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.625240 B = 3364.070019 C = 4617.350458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.078 3.922 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.443 4.443 8 H 0.082 0.918 9 C 0.138 3.862 10 C -0.135 4.135 11 C -0.117 4.117 12 C -0.045 4.045 13 F -0.171 7.171 14 C -0.080 4.080 15 C -0.205 4.205 16 C 0.039 3.961 17 C -0.073 4.073 18 C -0.145 4.145 19 C 0.076 3.924 20 N -0.449 5.449 21 C 0.028 3.972 22 C 0.524 3.476 23 F -0.175 7.175 24 F -0.178 7.178 25 F -0.152 7.152 26 H 0.288 0.712 27 H 0.130 0.870 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 -1.973 1.321 7.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.471 4.471 8 H 0.100 0.900 9 C 0.135 3.865 10 C -0.154 4.154 11 C -0.137 4.137 12 C -0.065 4.065 13 F -0.151 7.151 14 C -0.099 4.099 15 C -0.208 4.208 16 C 0.036 3.964 17 C -0.099 4.099 18 C -0.165 4.165 19 C -0.083 4.083 20 N -0.157 5.157 21 C -0.110 4.110 22 C 0.469 3.531 23 F -0.156 7.156 24 F -0.159 7.159 25 F -0.133 7.133 26 H 0.099 0.901 27 H 0.148 0.852 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.161 0.839 31 H 0.156 0.844 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.456 -2.029 2.237 7.127 hybrid contribution 0.137 0.771 -0.748 1.082 sum 6.593 -1.258 1.489 6.875 Atomic orbital electron populations 1.69768 1.07700 1.30191 1.31884 1.25996 0.94798 1.01664 0.91912 0.86321 0.80322 0.79795 0.80294 1.18438 1.19928 1.18714 1.19527 0.97981 0.90919 1.38678 0.89999 1.17399 0.90693 0.90579 0.87823 1.20946 0.98097 0.96703 0.99614 1.20530 1.00099 0.91877 1.01164 1.17078 0.98611 0.81425 1.09350 1.91300 1.81940 1.50083 1.91746 1.20453 0.94805 0.96972 0.97652 1.18058 1.00551 0.93846 1.08326 1.19322 0.94572 0.90850 0.91624 1.21875 0.90924 0.96230 1.00894 1.22210 1.00159 0.99347 0.94759 1.22568 0.93282 0.98338 0.94147 1.67028 0.98906 1.11224 1.38500 1.21195 0.92471 1.06009 0.91362 1.17779 0.85364 0.74826 0.75138 1.93199 1.88059 1.47910 1.86434 1.93156 1.96549 1.95939 1.30276 1.93334 1.72863 1.55262 1.91837 0.90097 0.85236 0.87915 0.87772 0.83856 0.84444 0.82411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.16 10.96 55.55 0.61 -17.55 16 2 C 0.08 1.76 5.15 -17.31 -0.09 1.67 16 3 Si 0.91 17.09 29.59 -169.99 -5.03 12.06 16 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 5 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.44 -10.43 8.46 -37.92 -0.32 -10.75 16 8 H 0.08 1.85 6.48 -52.49 -0.34 1.51 16 9 C 0.14 3.29 5.55 -106.55 -0.59 2.70 16 10 C -0.13 -3.18 8.63 -39.30 -0.34 -3.52 16 11 C -0.12 -2.65 9.94 -39.90 -0.40 -3.04 16 12 C -0.04 -1.03 7.31 -39.16 -0.29 -1.31 16 13 F -0.17 -3.81 17.26 2.25 0.04 -3.77 16 14 C -0.08 -1.77 8.04 -39.22 -0.32 -2.08 16 15 C -0.21 -4.56 3.64 -104.24 -0.38 -4.94 16 16 C 0.04 0.77 4.36 -104.75 -0.46 0.31 16 17 C -0.07 -1.21 8.92 -38.87 -0.35 -1.55 16 18 C -0.15 -1.95 10.10 -39.50 -0.40 -2.35 16 19 C 0.08 1.09 11.17 -17.46 -0.20 0.89 16 20 N -0.45 -8.18 9.74 -9.12 -0.09 -8.27 16 21 C 0.03 0.56 6.30 -82.14 -0.52 0.04 16 22 C 0.52 10.96 2.90 36.01 0.10 11.06 16 23 F -0.17 -3.61 14.90 2.25 0.03 -3.57 16 24 F -0.18 -3.53 16.86 2.25 0.04 -3.50 16 25 F -0.15 -3.54 16.04 2.25 0.04 -3.50 16 26 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 27 H 0.13 3.09 6.18 -52.49 -0.32 2.77 16 28 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 29 H 0.10 2.18 7.49 -52.49 -0.39 1.79 16 30 H 0.14 2.16 8.06 -52.49 -0.42 1.73 16 31 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16 32 H 0.16 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 297.80 15.07 4.49 4.49 Total: -1.00 -26.44 297.80 -6.29 -32.73 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -1.88 Total: 3.76 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -4.53 Total: -12.87 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.52 Total: -25.82 kcal Atomic # 9 Polarization: -14.49 SS G_CDS: 0.15 Total: -14.35 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.44 -6.29 -32.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242374859.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.676 kcal (2) G-P(sol) polarization free energy of solvation -26.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds